2F1TA

Outer membrane protein ompw
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
191
structure length
183
Chain Sequence
EAGEFFMRAGSATVRPTEGGGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGTRATGDIATVHHLPPTLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVGVDYLINRDWLVNMSVWYMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRFH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords Outer membrane protein W
publication title The outer membrane protein OmpW forms an eight-stranded beta-barrel with a hydrophobic channel.
pubmed doi rcsb
source organism Escherichia coli k12
total genus 45
structure length 183
sequence length 191
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2005-11-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03922 OmpW OmpW family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.20 Mainly Beta Beta Barrel Porin Porin 2f1tA00
1G90A 1P4TA 4RLCA 1MM4A 2X27X 2N2LA 2N2MA 2MHLA 2LHFA 1QJ9A 4PUXA 2M06A 2M07A 2K0LA 3G7GA 1Q9GA 1MM5A 1BXWA 1THQA 3QRCA 3QRAA 2MNHA 2ERVA 2F1VA 1QJ8A 1QJPA 3GP6A 2F1TA 3C5OA 1ORMA 2GE4A 2JMMA 1Q9FA
chains in the Genus database with same CATH superfamily
3T0SA 2Y0HA 2MHLA 2LHFA 1QJ9A 3AA7A 4FSPA 4XNKA 3JCUO 3VY9X 7PRNA 3JTYA 5G3AA 2R4PA 3A0BO 5IYUA 2J4UP 3VY8X 4LSFA 2K0LA 1PHOA 3NJTA 4KR8A 4D5UA 3AAAA 4K3CA 5H2FO 3DA3A 2W80C 5KAFO 1PRNA 1GFNA 4PR7A 4O4XA 4FRXA 3PGSA 1BXWA 3LK3A 5GTHO 1GFPA 5GV0A 1GFMA 2F1CX 1S5LO 5G26A 3DWNA 4GCQA 2R4NA 1T1LA 2XE1A 3KZIO 1OSMA 2MNHA 3PORA 3QRAA 3UAQA 4F4BA 3PGRA 5E79O 2ZLDA 4GCPA 3UU2A 3RBHA 2FGQX 2YPVA 3NSGA 3C5OA 3VE2A 1ZHWA 1ZHXA 4N58A 1MPFA 1GFOA 3QRCA 3PQUA 3SY9A 5GTIO 2Y2XA 4O3YA 1G90A 1ZHYA 5G39A 5B66O 3HOEA 2KC0A 2IWWA 3KVDD 2QTKA 2ODJA 3A0HO 4LSIA 3SZDA 3T24A 3T20A 3DZMA 3TZGA 1BT9A 3POQA 4FMSA 4UB8O 4C4VB 3V8UA 1HXUA 3POUA 3O0EA 4PUXA 3K19A 2XE5A 4JFBA 4K3BA 4IL6O 3HOLA 2IWVA 2K4TA 4O4UA 5T5FA 4LSEA 3SYSA 1ZHTA 3AAEB 5KAIO 2WJQA 4RJWA 4AFKA 5AFUL 2O4VA 1THQA 2J1NA 4O3WA 5DL5A 4CTDA 4AYNA 4FESA 4FSOA 4FT6A 5DL7A 4AYEC 2ERVA 4C69X 2R4LA 4PJ0O 1QJ8A 3HWBA 4XNLA 3GP6A 5ADXK 4FZLA 5DL8A 1ORMA 4O49A 2JQYA 4RJXA 4JCHA 2JMMA 4QQ1A 3SYBA 1Q9FA 4G75A 6PRNA 2KZ7A 3AA1A 1P4TA 4KRAA 1E54A 4AYID 4KR4A 5AFUK 2KZ7B 1MM4A 3AA1B 2X27X 2N2LA 2N2MA 2Y7SA 4FRTA 4O3ZA 4E1SA 3BRZA 5G38A 4C4VA 2R89A 2ZFGA 3PRNA 4FZNA 4RLBA 3VZWX 2XE2A 3PF1A 5DL6A 2M06A 2M07A 2R4OA 3AA6A 5D5DA 3VE1A 5ADXL 2KDYA 3AA6B 4U9CA 3AAEA 1BH3A 1Q9GA 3EMNX 4D65A 4N59A 4UB6O 3LK42 4Z3TA 2Y0LA 3DWOX 2WJRA 2XE3A 4B61A 4E1TA 8PRNA 2F1VA 3POXA 1QJPA 5PRNA 4FOZA 3WU2O 3AA0B 2F1TA 3PQSA 1T16A 4C00A 4GCSA 2PRNA 5FVNA 3LK2B 3WI5A 1IZNB 3SY7A 3VZTX 1H6S1 2X9KA 4GHBA 4RLCA 2XMXA 2YNKA 2XTQA 2XG6A 4AYMC 3AA7B 4FQEA 4AYDC 5JDPA 3LK41 5EE2A 1YS5A 2PORA 5TISO 2R88A 4RL9A 1OPFA 4AKRA 1GFQA 4BUMX 3A2SX 4AKRB 3VZUX 2R8AA 1HXTA 4AKMA 3AAAB 3G7GA 4FUVA 4FZMA 2LFUA 1MM5A 3WI4A 1ZHZA 3LK3B 2FGRA 2W81C 3BS0A 4G76A 2AXTO 4LSHA 4N75A 2Y0KA 1HXXA 3UPGA 3SZVA 3PGUA 2XTRA 4N74A 4AZLA 2OMFA 4D64A 3AA0A 3HW9A 4AUIA 2KXPA 4O3XB 3FYXA 4GF4A 3DA4A 2KXPB 5B5EO 3BRYA 2GE4A 3LK2A 1IZNA 2WVPA
chains in the Genus database with same CATH topology
3T0SA 2Y0HA 2MHLA 2LHFA 1QJ9A 3AA7A 4FSPA 4XNKA 3VY9X 7PRNA 3JTYA 5IYUA 2J4UP 3VY8X 4LSFA 2K0LA 1PHOA 4KR8A 4D5UA 3AAAA 3DA3A 2W80C 1PRNA 1GFNA 4O4XA 4FRXA 1BXWA 3LK3A 1GFPA 5GV0A 1GFMA 3SY9A 5G26A 4GCQA 2XE1A 3UAQA 1OSMA 2MNHA 3PORA 3QRAA 4F4BA 2ZLDA 4GCPA 3UU2A 3RBHA 2FGQX 2YPVA 3NSGA 3C5OA 3VE2A 1ZHWA 1ZHXA 4N58A 1MPFA 1GFOA 3QRCA 3PQUA 2Y2XA 4O3YA 1G90A 1ZHYA 3HOEA 2KC0A 3KVDD 2QTKA 2ODJA 4LSIA 3SZDA 3T24A 3T20A 3TZGA 1BT9A 3POQA 4FMSA 3V8UA 1HXUA 3POUA 3O0EA 4PUXA 3K19A 2XE5A 4JFBA 3HOLA 2K4TA 4O4UA 5T5FA 4LSEA 3SYSA 1ZHTA 3AAEB 4RJWA 4AFKA 5AFUL 2O4VA 1THQA 2J1NA 4O3WA 5DL5A 4AYNA 4FESA 4FSOA 4FT6A 5DL7A 4AYEC 2ERVA 4C69X 1QJ8A 3HWBA 4XNLA 3GP6A 5ADXK 4FZLA 5DL8A 1ORMA 4O49A 3SYBA 4RJXA 4JCHA 2JMMA 4QQ1A 1Q9FA 4G75A 6PRNA 2KZ7A 3AA1A 1P4TA 4KRAA 1E54A 4AYID 4KR4A 5AFUK 2KZ7B 1MM4A 3AA1B 2X27X 2N2LA 2N2MA 2Y7SA 4FRTA 4O3ZA 4E1SA 2ZFGA 3PRNA 4FZNA 4RLBA 3VZWX 2XE2A 5DL6A 2M06A 2M07A 3AA6A 5D5DA 3VE1A 5ADXL 2KDYA 3AA6B 4U9CA 3AAEA 1BH3A 1Q9GA 3EMNX 4D65A 4N59A 3LK42 4Z3TA 2Y0LA 4B61A 2XE3A 4E1TA 8PRNA 2F1VA 3POXA 1QJPA 5PRNA 4FOZA 3AA0B 2F1TA 3PQSA 4GCSA 2PRNA 5FVNA 3LK2B 3WI5A 1IZNB 3SY7A 3VZTX 1H6S1 4GHBA 4RLCA 2XMXA 2YNKA 2XTQA 2XG6A 4AYMC 3AA7B 5JDPA 4AYDC 3LK41 5EE2A 1YS5A 2PORA 4RL9A 1OPFA 4AKRA 1GFQA 4BUMX 3A2SX 4AKRB 3VZUX 1HXTA 4AKMA 3AAAB 3G7GA 4FUVA 4FZMA 2LFUA 1MM5A 3WI4A 1ZHZA 3LK3B 2FGRA 2W81C 4G76A 4LSHA 2Y0KA 1HXXA 3UPGA 3SZVA 2XTRA 4AZLA 4D64A 2OMFA 3AA0A 3HW9A 4AUIA 2KXPA 4O3XB 3FYXA 4GF4A 3DA4A 2KXPB 3LK2A 2GE4A 1IZNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1G90 A;  1P4T A;  4RLC A;  1MM4 A;  2X27 X;  2N2L A;  2N2M A;  2MHL A;  2LHF A;  1QJ9 A;  4PUX A;  2M06 A;  2M07 A;  2K0L A;  3G7G A;  1Q9G A;  1MM5 A;  1BXW A;  1THQ A;  3QRC A;  3QRA A;  2MNH A;  2ERV A;  2F1V A;  1QJ8 A;  1QJP A;  3GP6 A;  2F1T A;  3C5O A;  1ORM A;  2GE4 A;  2JMM A;  1Q9F A; 
#chains in the Genus database with same CATH topology
 3T0S A;  2Y0H A;  2MHL A;  2LHF A;  1QJ9 A;  3AA7 A;  4FSP A;  4XNK A;  3JCU O;  3VY9 X;  7PRN A;  3JTY A;  5G3A A;  2R4P A;  3A0B O;  5IYU A;  2J4U P;  3VY8 X;  4LSF A;  2K0L A;  1PHO A;  3NJT A;  4KR8 A;  4D5U A;  3AAA A;  4K3C A;  5H2F O;  3DA3 A;  2W80 C;  5KAF O;  1PRN A;  1GFN A;  4PR7 A;  4O4X A;  4FRX A;  3PGS A;  1BXW A;  3LK3 A;  5GTH O;  1GFP A;  5GV0 A;  1GFM A;  2F1C X;  1S5L O;  5G26 A;  3DWN A;  4GCQ A;  2R4N A;  1T1L A;  2XE1 A;  3KZI O;  1OSM A;  2MNH A;  3POR A;  3QRA A;  3UAQ A;  4F4B A;  3PGR A;  5E79 O;  2ZLD A;  4GCP A;  3UU2 A;  3RBH A;  2FGQ X;  2YPV A;  3NSG A;  3C5O A;  3VE2 A;  1ZHW A;  1ZHX A;  4N58 A;  1MPF A;  1GFO A;  3QRC A;  3PQU A;  3SY9 A;  5GTI O;  2Y2X A;  4O3Y A;  1G90 A;  1ZHY A;  5G39 A;  5B66 O;  3HOE A;  2KC0 A;  2IWW A;  3KVD D;  2QTK A;  2ODJ A;  3A0H O;  4LSI A;  3SZD A;  3T24 A;  3T20 A;  3DZM A;  3TZG A;  1BT9 A;  3POQ A;  4FMS A;  4UB8 O;  4C4V B;  3V8U A;  1HXU A;  3POU A;  3O0E A;  4PUX A;  3K19 A;  2XE5 A;  4JFB A;  4K3B A;  4IL6 O;  3HOL A;  2IWV A;  2K4T A;  4O4U A;  5T5F A;  4LSE A;  3SYS A;  1ZHT A;  3AAE B;  5KAI O;  2WJQ A;  4RJW A;  4AFK A;  5AFU L;  2O4V A;  1THQ A;  2J1N A;  4O3W A;  5DL5 A;  4CTD A;  4AYN A;  4FES A;  4FSO A;  4FT6 A;  5DL7 A;  4AYE C;  2ERV A;  4C69 X;  2R4L A;  4PJ0 O;  1QJ8 A;  3HWB A;  4XNL A;  3GP6 A;  5ADX K;  4FZL A;  5DL8 A;  1ORM A;  4O49 A;  2JQY A;  4RJX A;  4JCH A;  2JMM A;  4QQ1 A;  3SYB A;  1Q9F A;  4G75 A;  6PRN A;  2KZ7 A;  3AA1 A;  1P4T A;  4KRA A;  1E54 A;  4AYI D;  4KR4 A;  5AFU K;  2KZ7 B;  1MM4 A;  3AA1 B;  2X27 X;  2N2L A;  2N2M A;  2Y7S A;  4FRT A;  4O3Z A;  4E1S A;  3BRZ A;  5G38 A;  4C4V A;  2R89 A;  2ZFG A;  3PRN A;  4FZN A;  4RLB A;  3VZW X;  2XE2 A;  3PF1 A;  5DL6 A;  2M06 A;  2M07 A;  2R4O A;  3AA6 A;  5D5D A;  3VE1 A;  5ADX L;  2KDY A;  3AA6 B;  4U9C A;  3AAE A;  1BH3 A;  1Q9G A;  3EMN X;  4D65 A;  4N59 A;  4UB6 O;  3LK4 2;  4Z3T A;  2Y0L A;  3DWO X;  2WJR A;  2XE3 A;  4B61 A;  4E1T A;  8PRN A;  2F1V A;  3POX A;  1QJP A;  5PRN A;  4FOZ A;  3WU2 O;  3AA0 B;  2F1T A;  3PQS A;  1T16 A;  4C00 A;  4GCS A;  2PRN A;  5FVN A;  3LK2 B;  3WI5 A;  1IZN B;  3SY7 A;  3VZT X;  1H6S 1;  2X9K A;  4GHB A;  4RLC A;  2XMX A;  2YNK A;  2XTQ A;  2XG6 A;  4AYM C;  3AA7 B;  4FQE A;  4AYD C;  5JDP A;  3LK4 1;  5EE2 A;  1YS5 A;  2POR A;  5TIS O;  2R88 A;  4RL9 A;  1OPF A;  4AKR A;  1GFQ A;  4BUM X;  3A2S X;  4AKR B;  3VZU X;  2R8A A;  1HXT A;  4AKM A;  3AAA B;  3G7G A;  4FUV A;  4FZM A;  2LFU A;  1MM5 A;  3WI4 A;  1ZHZ A;  3LK3 B;  2FGR A;  2W81 C;  3BS0 A;  4G76 A;  2AXT O;  4LSH A;  4N75 A;  2Y0K A;  1HXX A;  3UPG A;  3SZV A;  3PGU A;  2XTR A;  4N74 A;  4AZL A;  2OMF A;  4D64 A;  3AA0 A;  3HW9 A;  4AUI A;  2KXP A;  4O3X B;  3FYX A;  4GF4 A;  3DA4 A;  2KXP B;  5B5E O;  3BRY A;  2GE4 A;  3LK2 A;  1IZN A;  2WVP A; 
#chains in the Genus database with same CATH homology
 3T0S A;  2Y0H A;  2MHL A;  2LHF A;  1QJ9 A;  3AA7 A;  4FSP A;  4XNK A;  3VY9 X;  7PRN A;  3JTY A;  5IYU A;  2J4U P;  3VY8 X;  4LSF A;  2K0L A;  1PHO A;  4KR8 A;  4D5U A;  3AAA A;  3DA3 A;  2W80 C;  1PRN A;  1GFN A;  4O4X A;  4FRX A;  1BXW A;  3LK3 A;  1GFP A;  5GV0 A;  1GFM A;  3SY9 A;  5G26 A;  4GCQ A;  2XE1 A;  3UAQ A;  1OSM A;  2MNH A;  3POR A;  3QRA A;  4F4B A;  2ZLD A;  4GCP A;  3UU2 A;  3RBH A;  2FGQ X;  2YPV A;  3NSG A;  3C5O A;  3VE2 A;  1ZHW A;  1ZHX A;  4N58 A;  1MPF A;  1GFO A;  3QRC A;  3PQU A;  2Y2X A;  4O3Y A;  1G90 A;  1ZHY A;  3HOE A;  2KC0 A;  3KVD D;  2QTK A;  2ODJ A;  4LSI A;  3SZD A;  3T24 A;  3T20 A;  3TZG A;  1BT9 A;  3POQ A;  4FMS A;  3V8U A;  1HXU A;  3POU A;  3O0E A;  4PUX A;  3K19 A;  2XE5 A;  4JFB A;  3HOL A;  2K4T A;  4O4U A;  5T5F A;  4LSE A;  3SYS A;  1ZHT A;  3AAE B;  4RJW A;  4AFK A;  5AFU L;  2O4V A;  1THQ A;  2J1N A;  4O3W A;  5DL5 A;  4AYN A;  4FES A;  4FSO A;  4FT6 A;  5DL7 A;  4AYE C;  2ERV A;  4C69 X;  1QJ8 A;  3HWB A;  4XNL A;  3GP6 A;  5ADX K;  4FZL A;  5DL8 A;  1ORM A;  4O49 A;  3SYB A;  4RJX A;  4JCH A;  2JMM A;  4QQ1 A;  1Q9F A;  4G75 A;  6PRN A;  2KZ7 A;  3AA1 A;  1P4T A;  4KRA A;  1E54 A;  4AYI D;  4KR4 A;  5AFU K;  2KZ7 B;  1MM4 A;  3AA1 B;  2X27 X;  2N2L A;  2N2M A;  2Y7S A;  4FRT A;  4O3Z A;  4E1S A;  2ZFG A;  3PRN A;  4FZN A;  4RLB A;  3VZW X;  2XE2 A;  5DL6 A;  2M06 A;  2M07 A;  3AA6 A;  5D5D A;  3VE1 A;  5ADX L;  2KDY A;  3AA6 B;  4U9C A;  3AAE A;  1BH3 A;  1Q9G A;  3EMN X;  4D65 A;  4N59 A;  3LK4 2;  4Z3T A;  2Y0L A;  4B61 A;  2XE3 A;  4E1T A;  8PRN A;  2F1V A;  3POX A;  1QJP A;  5PRN A;  4FOZ A;  3AA0 B;  2F1T A;  3PQS A;  4GCS A;  2PRN A;  5FVN A;  3LK2 B;  3WI5 A;  1IZN B;  3SY7 A;  3VZT X;  1H6S 1;  4GHB A;  4RLC A;  2XMX A;  2YNK A;  2XTQ A;  2XG6 A;  4AYM C;  3AA7 B;  5JDP A;  4AYD C;  3LK4 1;  5EE2 A;  1YS5 A;  2POR A;  4RL9 A;  1OPF A;  4AKR A;  1GFQ A;  4BUM X;  3A2S X;  4AKR B;  3VZU X;  1HXT A;  4AKM A;  3AAA B;  3G7G A;  4FUV A;  4FZM A;  2LFU A;  1MM5 A;  3WI4 A;  1ZHZ A;  3LK3 B;  2FGR A;  2W81 C;  4G76 A;  4LSH A;  2Y0K A;  1HXX A;  3UPG A;  3SZV A;  2XTR A;  4AZL A;  4D64 A;  2OMF A;  3AA0 A;  3HW9 A;  4AUI A;  2KXP A;  4O3X B;  3FYX A;  4GF4 A;  3DA4 A;  2KXP B;  3LK2 A;  2GE4 A;  1IZN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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