2F6EA

Clostridium difficile toxin a c-terminal fragment 1 (tcda-f1)
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
125
structure length
125
Chain Sequence
YYFEPNTAIGANGYKIIDNKNFYFRNGLPQIGVFKGPNGFEYFAPANTDANNIEGQAIRYQNRFLHLLGNIYYFGNNSKAVTGWQTINGNMYYFMPDTAMAAAGGLFEIDGVIYFFGVDGVKAPG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Toxin A
publication title Crystal structure of receptor-binding C-terminal repeats from Clostridium difficile toxin A
pubmed doi rcsb
source organism Clostridium difficile
total genus 21
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 2005-11-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01473 CW_binding_1 Putative cell wall binding repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.270.10 Mainly Beta Ribbon left handed beta-beta-3-solenoid Cholin Binding 2f6eA00
2BMLA 1H8GA 2X8PA 1GVMA 2X8OA 2J8GA 2QJ6A 3KLKA 2G7CA 4NBYA 2X8MA 4TTUA 3HIAA 2VYUA 4NBXA 4NBZA 2IXVA 2J8FA 4TVDA 4NC2A 4TVCA 3KLLA 4AYGA 3HZ3A 2V04A 2V05A 4X36A 2F6EA 1H09A 1HCXA 2IXUA 4NC0A 3TTOA 1OBAA 3TTQA
chains in the Genus database with same CATH superfamily
2BMLA 1H8GA 2X8PA 1GVMA 2X8OA 2J8GA 2QJ6A 3KLKA 2G7CA 4NBYA 2X8MA 4TTUA 3HIAA 2VYUA 4NBXA 4NBZA 2IXVA 2J8FA 4TVDA 4NC2A 4TVCA 3KLLA 4AYGA 3HZ3A 2V04A 2V05A 4X36A 2F6EA 1H09A 1HCXA 2IXUA 4NC0A 3TTOA 1OBAA 3TTQA
chains in the Genus database with same CATH topology
2BMLA 1H8GA 2X8PA 1GVMA 2X8OA 2J8GA 2QJ6A 3KLKA 2G7CA 4NBYA 2X8MA 4TTUA 3HIAA 2VYUA 4NBXA 4NBZA 2IXVA 2J8FA 4TVDA 4NC2A 4TVCA 3KLLA 4AYGA 3HZ3A 2V04A 2V05A 4X36A 2F6EA 1H09A 1HCXA 2IXUA 4NC0A 3TTOA 1OBAA 3TTQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BML A;  1H8G A;  2X8P A;  1GVM A;  2X8O A;  2J8G A;  2QJ6 A;  3KLK A;  2G7C A;  4NBY A;  2X8M A;  4TTU A;  3HIA A;  2VYU A;  4NBX A;  4NBZ A;  2IXV A;  2J8F A;  4TVD A;  4NC2 A;  4TVC A;  3KLL A;  4AYG A;  3HZ3 A;  2V04 A;  2V05 A;  4X36 A;  2F6E A;  1H09 A;  1HCX A;  2IXU A;  4NC0 A;  3TTO A;  1OBA A;  3TTQ A; 
#chains in the Genus database with same CATH topology
 2BML A;  1H8G A;  2X8P A;  1GVM A;  2X8O A;  2J8G A;  2QJ6 A;  3KLK A;  2G7C A;  4NBY A;  2X8M A;  4TTU A;  3HIA A;  2VYU A;  4NBX A;  4NBZ A;  2IXV A;  2J8F A;  4TVD A;  4NC2 A;  4TVC A;  3KLL A;  4AYG A;  3HZ3 A;  2V04 A;  2V05 A;  4X36 A;  2F6E A;  1H09 A;  1HCX A;  2IXU A;  4NC0 A;  3TTO A;  1OBA A;  3TTQ A; 
#chains in the Genus database with same CATH homology
 2BML A;  1H8G A;  2X8P A;  1GVM A;  2X8O A;  2J8G A;  2QJ6 A;  3KLK A;  2G7C A;  4NBY A;  2X8M A;  4TTU A;  3HIA A;  2VYU A;  4NBX A;  4NBZ A;  2IXV A;  2J8F A;  4TVD A;  4NC2 A;  4TVC A;  3KLL A;  4AYG A;  3HZ3 A;  2V04 A;  2V05 A;  4X36 A;  2F6E A;  1H09 A;  1HCX A;  2IXU A;  4NC0 A;  3TTO A;  1OBA A;  3TTQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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