2F6SA

Structure of cell filamentation protein (fic) from helicobacter pylori
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
180
structure length
180
Chain Sequence
GHMHLDRQSLEKAKHLIQSGLIDTIEVGTIKGLQEIHRFLFEGLYEFAGKIRDKNIAKGNFRFANCLYLDLILPRIESMPQNNFNQIVEKYVEMNIAHPFLEGNGRATRIWLDLLLKKELKKIVLWDRIDKAAYLSAMERSPVNDLEIKTLLKKHLSSNTNDPLTLIKGITQSYYYEGLG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords cell filamentation protein, putative
publication title Structure of cell filamentation protein (fic) from Helicobacter pylori
rcsb
source organism Helicobacter pylori
total genus 63
structure length 180
sequence length 180
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-11-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02661 Fic Fic/DOC family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3290.10 Mainly Alpha Orthogonal Bundle Fic-like fold Fido-like domain 2f6sA00
3SE5A 4N67A 2JK8A 5CMTA 3SN9A 5CGLA 2F6SA 5JFFA 4PY3A 4U0ZA 4X2EA 3ZCBA 4WGJA 4U0UA 3ZC7A 5EU0A 5JFZA 4XI8A 4X2DA 4U0SA 4U07A 4M16A 2VY3A 2G03A 3LETA 4ITRA 4X2CA 5CKLA 3S6AA 3CUCA 5JJ6A 4NPSA 4U04A 3SHGA 3ZLMA 5JJ7A 4LU4A 2VZAA 3N3UA
chains in the Genus database with same CATH superfamily
3SE5A 4N67A 2JK8A 5CMTA 3SN9A 5CGLA 2F6SA 5JFFA 4PY3A 4U0ZA 4X2EA 3ZCBA 1NH1A 4WGJA 4U0UA 2NUDA 3ZC7A 5EU0A 5JFZA 4XI8A 4X2DA 4U0SA 4U07A 2NUNA 4M16A 2G03A 2VY3A 3LETA 4ITRA 4X2CA 5CKLA 3S6AA 3CUCA 5JJ6A 4NPSA 4U04A 3SHGA 3ZLMA 5JJ7A 4LU4A 2VZAA 3N3UA
chains in the Genus database with same CATH topology
3SE5A 4N67A 2JK8A 5CMTA 3SN9A 5CGLA 2F6SA 5JFFA 4PY3A 4U0ZA 4X2EA 3ZCBA 4WGJA 4U0UA 3ZC7A 5EU0A 5JFZA 4XI8A 4X2DA 4U0SA 4U07A 4M16A 2VY3A 2G03A 3LETA 4ITRA 4X2CA 5CKLA 3S6AA 3CUCA 5JJ6A 4NPSA 4U04A 3SHGA 3ZLMA 5JJ7A 4LU4A 2VZAA 3N3UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SE5 A;  4N67 A;  2JK8 A;  5CMT A;  3SN9 A;  5CGL A;  2F6S A;  5JFF A;  4PY3 A;  4U0Z A;  4X2E A;  3ZCB A;  4WGJ A;  4U0U A;  3ZC7 A;  5EU0 A;  5JFZ A;  4XI8 A;  4X2D A;  4U0S A;  4U07 A;  4M16 A;  2VY3 A;  2G03 A;  3LET A;  4ITR A;  4X2C A;  5CKL A;  3S6A A;  3CUC A;  5JJ6 A;  4NPS A;  4U04 A;  3SHG A;  3ZLM A;  5JJ7 A;  4LU4 A;  2VZA A;  3N3U A; 
#chains in the Genus database with same CATH topology
 3SE5 A;  4N67 A;  2JK8 A;  5CMT A;  3SN9 A;  5CGL A;  2F6S A;  5JFF A;  4PY3 A;  4U0Z A;  4X2E A;  3ZCB A;  1NH1 A;  4WGJ A;  4U0U A;  2NUD A;  3ZC7 A;  5EU0 A;  5JFZ A;  4XI8 A;  4X2D A;  4U0S A;  4U07 A;  2NUN A;  4M16 A;  2G03 A;  2VY3 A;  3LET A;  4ITR A;  4X2C A;  5CKL A;  3S6A A;  3CUC A;  5JJ6 A;  4NPS A;  4U04 A;  3SHG A;  3ZLM A;  5JJ7 A;  4LU4 A;  2VZA A;  3N3U A; 
#chains in the Genus database with same CATH homology
 3SE5 A;  4N67 A;  2JK8 A;  5CMT A;  3SN9 A;  5CGL A;  2F6S A;  5JFF A;  4PY3 A;  4U0Z A;  4X2E A;  3ZCB A;  4WGJ A;  4U0U A;  3ZC7 A;  5EU0 A;  5JFZ A;  4XI8 A;  4X2D A;  4U0S A;  4U07 A;  4M16 A;  2VY3 A;  2G03 A;  3LET A;  4ITR A;  4X2C A;  5CKL A;  3S6A A;  3CUC A;  5JJ6 A;  4NPS A;  4U04 A;  3SHG A;  3ZLM A;  5JJ7 A;  4LU4 A;  2VZA A;  3N3U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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