2F6SA

Structure of cell filamentation protein (fic) from helicobacter pylori
Total Genus 63
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
180
structure length
180
Chain Sequence
GHMHLDRQSLEKAKHLIQSGLIDTIEVGTIKGLQEIHRFLFEGLYEFAGKIRDKNIAKGNFRFANCLYLDLILPRIESMPQNNFNQIVEKYVEMNIAHPFLEGNGRATRIWLDLLLKKELKKIVLWDRIDKAAYLSAMERSPVNDLEIKTLLKKHLSSNTNDPLTLIKGITQSYYYEGLG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structure of cell filamentation protein (fic) from Helicobacter pylori
rcsb
source organism Helicobacter pylori
molecule tags Structural genomics, unknown function
molecule keywords cell filamentation protein, putative
total genus 63
structure length 180
sequence length 180
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-11-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02661 Fic Fic/DOC family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3290.10 Mainly Alpha Orthogonal Bundle Fic-like fold Fido-like domain 2f6sA00
4PY3A 4X2EA 4LU4A 4U07A 4NPSA 4U0ZA 5CKLA 4M16A 4ITRA 4U0UA 4X2DA 5JJ6A 3S6AA 3ZC7A 3SN9A 3SE5A 5JFFA 4U0SA 2VZAA 3CUCA 2G03A 2JK8A 2VY3A 4X2CA 3ZCBA 5JJ7A 3ZLMA 2F6SA 4XI8A 4U04A 5EU0A 5CGLA 3SHGA 4WGJA 5JFZA 3LETA 3N3UA 5CMTA 4N67A
chains in the Genus database with same CATH superfamily
4PY3A 4X2EA 4LU4A 4U07A 4NPSA 4U0ZA 5CKLA 4M16A 4ITRA 4U0UA 4X2DA 2NUNA 5JJ6A 3S6AA 3ZC7A 3SN9A 3SE5A 1NH1A 4U0SA 5JFFA 2VZAA 2NUDA 3CUCA 2G03A 2JK8A 2VY3A 4X2CA 3ZCBA 5JJ7A 3ZLMA 2F6SA 4XI8A 4U04A 5EU0A 5CGLA 3SHGA 4WGJA 5JFZA 3LETA 3N3UA 5CMTA 4N67A
chains in the Genus database with same CATH topology
4PY3A 4X2EA 4LU4A 4U07A 4NPSA 4U0ZA 5CKLA 4M16A 4ITRA 4U0UA 4X2DA 5JJ6A 3S6AA 3ZC7A 3SN9A 3SE5A 5JFFA 4U0SA 2VZAA 3CUCA 2G03A 2JK8A 2VY3A 4X2CA 3ZCBA 5JJ7A 3ZLMA 2F6SA 4XI8A 4U04A 5EU0A 5CGLA 3SHGA 4WGJA 5JFZA 3LETA 3N3UA 5CMTA 4N67A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PY3 A;  4X2E A;  4LU4 A;  4U07 A;  4NPS A;  4U0Z A;  5CKL A;  4M16 A;  4ITR A;  4U0U A;  4X2D A;  5JJ6 A;  3S6A A;  3ZC7 A;  3SN9 A;  3SE5 A;  5JFF A;  4U0S A;  2VZA A;  3CUC A;  2G03 A;  2JK8 A;  2VY3 A;  4X2C A;  3ZCB A;  5JJ7 A;  3ZLM A;  2F6S A;  4XI8 A;  4U04 A;  5EU0 A;  5CGL A;  3SHG A;  4WGJ A;  5JFZ A;  3LET A;  3N3U A;  5CMT A;  4N67 A; 
#chains in the Genus database with same CATH topology
 4PY3 A;  4X2E A;  4LU4 A;  4U07 A;  4NPS A;  4U0Z A;  5CKL A;  4M16 A;  4ITR A;  4U0U A;  4X2D A;  2NUN A;  5JJ6 A;  3S6A A;  3ZC7 A;  3SN9 A;  3SE5 A;  1NH1 A;  4U0S A;  5JFF A;  2VZA A;  2NUD A;  3CUC A;  2G03 A;  2JK8 A;  2VY3 A;  4X2C A;  3ZCB A;  5JJ7 A;  3ZLM A;  2F6S A;  4XI8 A;  4U04 A;  5EU0 A;  5CGL A;  3SHG A;  4WGJ A;  5JFZ A;  3LET A;  3N3U A;  5CMT A;  4N67 A; 
#chains in the Genus database with same CATH homology
 4PY3 A;  4X2E A;  4LU4 A;  4U07 A;  4NPS A;  4U0Z A;  5CKL A;  4M16 A;  4ITR A;  4U0U A;  4X2D A;  5JJ6 A;  3S6A A;  3ZC7 A;  3SN9 A;  3SE5 A;  5JFF A;  4U0S A;  2VZA A;  3CUC A;  2G03 A;  2JK8 A;  2VY3 A;  4X2C A;  3ZCB A;  5JJ7 A;  3ZLM A;  2F6S A;  4XI8 A;  4U04 A;  5EU0 A;  5CGL A;  3SHG A;  4WGJ A;  5JFZ A;  3LET A;  3N3U A;  5CMT A;  4N67 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...