2FCJA

Structure of small toprim domain protein from bacillus stearothermophilus.
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
114
structure length
114
Chain Sequence
b'MRRVEKVIIVEGRSDKQKVAAVLNEPVVIVCTNGTISDARLEELADELEGYDVYLLADADEAGEKLRRQFRRMFPEAEHLYIDRAYREVAAAPIWHLAQVLLRARFDVRIESLM'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords small TOPRIM domain protein
publication title Crystal structure and putative function of small Toprim domain-containing protein from Bacillus stearothermophilus.
pubmed doi rcsb
source organism Geobacillus stearothermophilus
molecule tags Structural genomics, unknown function
total genus 38
structure length 114
sequence length 114
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2005-12-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01751 Toprim Toprim domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1360.20 Alpha Beta 3-Layer(aba) Sandwich Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 Toprim domain 2fcjA00
2FCJA 2I5RA
chains in the Genus database with same CATH superfamily
2Q2EA 1VDDA 4O6OA 2I5RA 4O6PB 1T6T1 2AU3A 3B39A 3VDPA 3VE5A 4JCVA 4EDTA 3VDUA 4EDKA 2ZBKA 2FCJA 1DD9A 4EE1A 1DDEA 1EQNA 4EDRA 5GUJA 4EDGA 1D3YA 4EDVA 2V1CA 4E2KA
chains in the Genus database with same CATH topology
2FCJA 2I5RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FCJ A;  2I5R A; 
#chains in the Genus database with same CATH topology
 2Q2E A;  1VDD A;  4O6O A;  2I5R A;  4O6P B;  1T6T 1;  2AU3 A;  3B39 A;  3VDP A;  3VE5 A;  4JCV A;  4EDT A;  3VDU A;  4EDK A;  2ZBK A;  2FCJ A;  1DD9 A;  4EE1 A;  1DDE A;  1EQN A;  4EDR A;  5GUJ A;  4EDG A;  1D3Y A;  4EDV A;  2V1C A;  4E2K A; 
#chains in the Genus database with same CATH homology
 2FCJ A;  2I5R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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