2FFNA

The e41q mutant of tetraheme cytochrome c3 from desulfovibrio vulgaris miyazaki f
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
107
structure length
107
Chain Sequence
APKAPADGLKMDKTKQPVVFNHSTHKAVKCGDCHHPVNGKEDYQKCATAGCHDNMDKKDKSAKGYYHAMHDKGTKFKSCVGCHLETAGADAAKKKELTGCKGSKCHS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords Cytochrome c3
publication title Roles of charged residues in pH-dependent redox properties of cytochrome c3 from Desulfovibrio vulgaris Miyazaki F
pubmed doi rcsb
source organism Desulfovibrio vulgaris str. 'miyazaki f'
total genus 22
structure length 107
sequence length 107
ec nomenclature
pdb deposition date 2005-12-20
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.10.10 Alpha Beta Alpha-Beta Complex Cytochrome C3 Cytochrome C3 2ffnA00
2KSUA 3H33A 1QN1A 1HH5A 2YYXA 1OS6A 1CZJA 2EWUA 2A3PA 2CYMA 1I77A 1MDVA 1F22A 2CVCA 2FFNA 4HB8A 4HAJA 2CTHA 1J0OA 1WR5A 1EHJA 3SJ0X 1NEWA 2N91A 2BPNA 1W7OA 1A2IA 3CAOA 3OUEA 19HCA 2A3MA 3H4NA 4HBFA 4HC3A 1J0PA 1Z1NX 2YXCA 2Z47A 2EWIA 3SJ1X 2CY3A 3BXUA 1GWSA 1QN0A 1AQEA 1H29A 1OFYA 4HDLA 1OFWA 3OUQA 3H34A 3SELX 1DUWA 2CDVA 2MZ9A 3OV0A 2EWKA 3CYRA 1LM2A 1RWJA 1IT1A 2LZZA 1WADA 1GYOA 2KMYA 3SJ4X 2YYWA 3CARA 2E84A 1GM4A 1UPDA 2BQ4A 1L3OA 4HB6A 1KWJA 2LDOA 1UP9A 1GMBA
chains in the Genus database with same CATH superfamily
2KSUA 3H33A 1QN1A 1HH5A 2YYXA 1OS6A 1CZJA 2EWUA 2A3PA 2CYMA 1I77A 1MDVA 1F22A 2CVCA 2FFNA 4HB8A 4HAJA 2CTHA 1J0OA 1WR5A 1EHJA 3SJ0X 1NEWA 2N91A 2BPNA 1W7OA 1A2IA 3CAOA 3OUEA 19HCA 2A3MA 3H4NA 4HBFA 4HC3A 1J0PA 1Z1NX 2YXCA 2Z47A 2EWIA 3SJ1X 2CY3A 3BXUA 1GWSA 1QN0A 1AQEA 1H29A 1OFYA 4HDLA 1OFWA 3OUQA 3H34A 3SELX 1DUWA 2CDVA 2MZ9A 3OV0A 2EWKA 3CYRA 1LM2A 1RWJA 1IT1A 2LZZA 1WADA 1GYOA 2KMYA 3SJ4X 2YYWA 3CARA 2E84A 1GM4A 1UPDA 2BQ4A 1L3OA 4HB6A 1KWJA 2LDOA 1UP9A 1GMBA
chains in the Genus database with same CATH topology
2KSUA 3H33A 1QN1A 1HH5A 2YYXA 1OS6A 1CZJA 2EWUA 2A3PA 2CYMA 1I77A 1MDVA 1F22A 2CVCA 2FFNA 4HB8A 4HAJA 2CTHA 1J0OA 1WR5A 1EHJA 3SJ0X 1NEWA 2N91A 2BPNA 1W7OA 1A2IA 3CAOA 3OUEA 19HCA 2A3MA 3H4NA 4HBFA 4HC3A 1J0PA 1Z1NX 2YXCA 2Z47A 2EWIA 3SJ1X 2CY3A 3BXUA 1GWSA 1QN0A 1AQEA 1H29A 1OFYA 4HDLA 1OFWA 3OUQA 3H34A 3SELX 1DUWA 2CDVA 2MZ9A 3OV0A 2EWKA 3CYRA 1LM2A 1RWJA 1IT1A 2LZZA 1WADA 1GYOA 2KMYA 3SJ4X 2YYWA 3CARA 2E84A 1GM4A 1UPDA 2BQ4A 1L3OA 4HB6A 1KWJA 2LDOA 1UP9A 1GMBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KSU A;  3H33 A;  1QN1 A;  1HH5 A;  2YYX A;  1OS6 A;  1CZJ A;  2EWU A;  2A3P A;  2CYM A;  1I77 A;  1MDV A;  1F22 A;  2CVC A;  2FFN A;  4HB8 A;  4HAJ A;  2CTH A;  1J0O A;  1WR5 A;  1EHJ A;  3SJ0 X;  1NEW A;  2N91 A;  2BPN A;  1W7O A;  1A2I A;  3CAO A;  3OUE A;  19HC A;  2A3M A;  3H4N A;  4HBF A;  4HC3 A;  1J0P A;  1Z1N X;  2YXC A;  2Z47 A;  2EWI A;  3SJ1 X;  2CY3 A;  3BXU A;  1GWS A;  1QN0 A;  1AQE A;  1H29 A;  1OFY A;  4HDL A;  1OFW A;  3OUQ A;  3H34 A;  3SEL X;  1DUW A;  2CDV A;  2MZ9 A;  3OV0 A;  2EWK A;  3CYR A;  1LM2 A;  1RWJ A;  1IT1 A;  2LZZ A;  1WAD A;  1GYO A;  2KMY A;  3SJ4 X;  2YYW A;  3CAR A;  2E84 A;  1GM4 A;  1UPD A;  2BQ4 A;  1L3O A;  4HB6 A;  1KWJ A;  2LDO A;  1UP9 A;  1GMB A; 
#chains in the Genus database with same CATH topology
 2KSU A;  3H33 A;  1QN1 A;  1HH5 A;  2YYX A;  1OS6 A;  1CZJ A;  2EWU A;  2A3P A;  2CYM A;  1I77 A;  1MDV A;  1F22 A;  2CVC A;  2FFN A;  4HB8 A;  4HAJ A;  2CTH A;  1J0O A;  1WR5 A;  1EHJ A;  3SJ0 X;  1NEW A;  2N91 A;  2BPN A;  1W7O A;  1A2I A;  3CAO A;  3OUE A;  19HC A;  2A3M A;  3H4N A;  4HBF A;  4HC3 A;  1J0P A;  1Z1N X;  2YXC A;  2Z47 A;  2EWI A;  3SJ1 X;  2CY3 A;  3BXU A;  1GWS A;  1QN0 A;  1AQE A;  1H29 A;  1OFY A;  4HDL A;  1OFW A;  3OUQ A;  3H34 A;  3SEL X;  1DUW A;  2CDV A;  2MZ9 A;  3OV0 A;  2EWK A;  3CYR A;  1LM2 A;  1RWJ A;  1IT1 A;  2LZZ A;  1WAD A;  1GYO A;  2KMY A;  3SJ4 X;  2YYW A;  3CAR A;  2E84 A;  1GM4 A;  1UPD A;  2BQ4 A;  1L3O A;  4HB6 A;  1KWJ A;  2LDO A;  1UP9 A;  1GMB A; 
#chains in the Genus database with same CATH homology
 2KSU A;  3H33 A;  1QN1 A;  1HH5 A;  2YYX A;  1OS6 A;  1CZJ A;  2EWU A;  2A3P A;  2CYM A;  1I77 A;  1MDV A;  1F22 A;  2CVC A;  2FFN A;  4HB8 A;  4HAJ A;  2CTH A;  1J0O A;  1WR5 A;  1EHJ A;  3SJ0 X;  1NEW A;  2N91 A;  2BPN A;  1W7O A;  1A2I A;  3CAO A;  3OUE A;  19HC A;  2A3M A;  3H4N A;  4HBF A;  4HC3 A;  1J0P A;  1Z1N X;  2YXC A;  2Z47 A;  2EWI A;  3SJ1 X;  2CY3 A;  3BXU A;  1GWS A;  1QN0 A;  1AQE A;  1H29 A;  1OFY A;  4HDL A;  1OFW A;  3OUQ A;  3H34 A;  3SEL X;  1DUW A;  2CDV A;  2MZ9 A;  3OV0 A;  2EWK A;  3CYR A;  1LM2 A;  1RWJ A;  1IT1 A;  2LZZ A;  1WAD A;  1GYO A;  2KMY A;  3SJ4 X;  2YYW A;  3CAR A;  2E84 A;  1GM4 A;  1UPD A;  2BQ4 A;  1L3O A;  4HB6 A;  1KWJ A;  2LDO A;  1UP9 A;  1GMB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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