2FGRA

High resolution xray structure of omp32
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
332
structure length
332
Chain Sequence
b'ESSVTLFGIVDTNVAYVNKDAAGDSRYGLGTSGASTSRLGLRGTEDLGGGLKAGFWLEGEIFGDDGNASGFNFKRRSTVSLSGNFGEVRLGRDLVPTSQKLTSYDLFSATGIGPFMGFRNWAAGQGADDNGIRANNLISYYTPNFGGFNAGFGYAFDEKQTIGTADSVGRYIGGYVAYDNGPLSASLGLAQQKTAVGGLATDRDEITLGASYNFGVAKLSGLLQQTKFKRDIGGDIKTNSYMLGASAPVGGVGEVKLQYALYDQKAIDSKAHQITLGYVHNLSKRTALYGNLAFLKNKDASTLGLQAKGVYAGGVQAGESQTGVQVGIRHAF'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title High resolution crystal structures and molecular dynamics studies reveal substrate binding in the porin omp32
pubmed doi rcsb
molecule keywords Outer membrane porin protein 32
molecule tags Membrane protein
total genus 92
structure length 332
sequence length 332
ec nomenclature
pdb deposition date 2005-12-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 2fgrA00
1OSMA 5PRNA 3T20A 4D5UA 4GCSA 3POXA 1BH3A 2Y0HA 3POUA 3VZTX 2QTKA 5DL8A 3T24A 2XE2A 4FMSA 3EMNX 2O4VA 2FGQX 1HXUA 4LSHA 2PRNA 4FOZA 2ZLDA 3PORA 4FT6A 5DL5A 4GCQA 3UPGA 4KR4A 1OPFA 8PRNA 1PRNA 4FRXA 1MPFA 2ODJA 2OMFA 3POQA 5JDPA 3SY7A 2Y0KA 4JFBA 3VY8X 2XG6A 3K19A 1GFNA 3FYXA 3JTYA 3SY9A 3VZUX 3SYSA 5DL6A 2XE1A 4AUIA 3HWBA 4LSFA 1HXXA 3SYBA 4LSEA 2K4TA 1GFPA 3O0EA 3NSGA 1GFOA 1E54A 4FSPA 3WI4A 1HXTA 1GFQA 3SZVA 1H6S1 6PRNA 5FVNA 3PRNA 2J4UP 4GCPA 3T0SA 3HW9A 4RJXA 4D65A 4C69X 3UU2A 2J1NA 4KRAA 2Y0LA 2Y2XA 3VZWX 4FSOA 3VY9X 1BT9A 2XE5A 5DL7A 4FRTA 1GFMA 4D64A 1PHOA 2ZFGA 3A2SX 3SZDA 4LSIA 4BUMX 2FGRA 3WI5A 2XE3A 7PRNA 2PORA 4RJWA 4KR8A
chains in the Genus database with same CATH superfamily
1G90A 5TISO 4O3XB 3VE2A 5AFUK 3PGRA 2LHFA 4G76A 5GV0A 1OSMA 3DWNA 2GE4A 5PRNA 3AA7A 3T20A 2MNHA 2KXPB 5G39A 3HOEA 4D5UA 1ZHWA 1BXWA 1QJ9A 2WVPA 4GCSA 3LK2A 3POXA 4PUXA 4RL9A 1BH3A 1S5LO 2N2MA 4QQ1A 2Y0HA 2F1TA 3POUA 3VZTX 2QTKA 4RLBA 2IWWA 2R4PA 2M07A 5DL8A 3KZIO 3T24A 2XE2A 2WJRA 4K3BA 2YPVA 4FMSA 5ADXL 1MM4A 2O4VA 2FGQX 3EMNX 5D5DA 3AAAB 1HXUA 2M06A 2PRNA 4LSHA 2W81C 3LK3B 4FOZA 2Y7SA 4AYNA 2IWVA 2R4LA 3BS0A 4O4UA 2ZLDA 3PORA 3QRCA 2KDYA 4FT6A 4GCQA 5DL5A 4F4BA 3UPGA 4UB8O 4KR4A 1OPFA 3UAQA 2JQYA 3AA6A 4G75A 8PRNA 3LK42 1PRNA 3AA0B 4FRXA 1MPFA 3VE1A 2LFUA 4FZMA 2YNKA 2ODJA 2OMFA 1QJPA 3POQA 4AYID 5JDPA 3PQUA 1T16A 1ZHTA 3SY7A 3PGUA 2Y0KA 4K3CA 4JFBA 2F1CX 5GTIO 3VY8X 2N2LA 4AFKA 4O49A 2XG6A 3K19A 5GTHO 1GFNA 4AYEC 3LK3A 5H2FO 3NJTA 1THQA 3FYXA 1T1LA 4AKRB 3JTYA 4Z3TA 3DA4A 3PGSA 1IZNB 3SY9A 3VZUX 4UB6O 3A0HO 3DWOX 3SYSA 5DL6A 1Q9FA 4C4VB 4AYMC 5AFUL 2XE1A 2R88A 3AA0A 4AUIA 3HWBA 3V8UA 4C00A 2AXTO 4LSFA 2X27X 2KZ7B 3KVDD 4FZLA 1HXXA 2XTRA 2KXPA 4N59A 4AYDC 4E1TA 1Q9GA 5B5EO 3C5OA 2K0LA 3SYBA 4LSEA 2K4TA 1ZHXA 2MHLA 1GFPA 3O0EA 3NSGA 2XMXA 5G26A 1GFOA 1E54A 4FSPA 3WI4A 4AKRA 1MM5A 2JMMA 4B61A 1HXTA 4PR7A 4O3YA 2ERVA 1GFQA 3DA3A 3AAAA 3AAEB 3JCUO 4FQEA 3SZVA 1H6S1 6PRNA 5FVNA 3RBHA 4FZNA 3PRNA 5G38A 5E79O 2J4UP 4GCPA 3A0BO 4XNLA 2X9KA 4XNKA 1ZHZA 3T0SA 2F1VA 4O3WA 3TZGA 3HW9A 4O4XA 4JCHA 3AA1B 1ORMA 2R4NA 3BRYA 3GP6A 4O3ZA 4RJXA 5ADXK 4D65A 1ZHYA 4C69X 4GF4A 5T5FA 3HOLA 3UU2A 2J1NA 3WU2O 4KRAA 2Y0LA 2Y2XA 4PJ0O 4RLCA 3AAEA 3LK41 2W80C 4AKMA 3VZWX 4FSOA 3VY9X 1BT9A 2R8AA 2XE5A 3AA6B 5DL7A 4N74A 2R4OA 4AZLA 4FRTA 1GFMA 2R89A 4D64A 1IZNA 1PHOA 1YS5A 2KC0A 3AA7B 3PQSA 5IYUA 3DZMA 1P4TA 3QRAA 4C4VA 2ZFGA 3PF1A 3A2SX 4N75A 4CTDA 4N58A 4E1SA 3LK2B 3SZDA 2KZ7A 2XTQA 3AA1A 4LSIA 5KAIO 4BUMX 2FGRA 3WI5A 4IL6O 3BRZA 3G7GA 1QJ8A 4FUVA 5KAFO 2XE3A 2WJQA 7PRNA 2PORA 5EE2A 4U9CA 4FESA 5G3AA 4GHBA 4RJWA 4KR8A 5B66O
chains in the Genus database with same CATH topology
1G90A 4O3XB 3VE2A 5AFUK 2LHFA 4G76A 5GV0A 1OSMA 5PRNA 2GE4A 3AA7A 3T20A 2MNHA 2KXPB 3HOEA 4D5UA 1ZHWA 1BXWA 1QJ9A 4GCSA 3LK2A 3POXA 4PUXA 4RL9A 1BH3A 2N2MA 4QQ1A 2Y0HA 2F1TA 3POUA 3VZTX 2QTKA 4RLBA 5DL8A 2M07A 3T24A 2XE2A 2YPVA 4FMSA 5ADXL 1MM4A 2O4VA 2FGQX 3EMNX 5D5DA 3AAAB 1HXUA 2M06A 2PRNA 4LSHA 2W81C 3LK3B 4FOZA 2Y7SA 4AYNA 4O4UA 2ZLDA 3PORA 3QRCA 2KDYA 4FT6A 4GCQA 5DL5A 4F4BA 3UPGA 4KR4A 1OPFA 3UAQA 3AA6A 8PRNA 4G75A 3LK42 1PRNA 3AA0B 4FRXA 1MPFA 3VE1A 2LFUA 4FZMA 2YNKA 2ODJA 2OMFA 1QJPA 3POQA 4AYID 5JDPA 3PQUA 1ZHTA 3SY7A 2Y0KA 4JFBA 3VY8X 2N2LA 4AFKA 4O49A 2XG6A 3K19A 1GFNA 4AYEC 3LK3A 1THQA 3FYXA 4AKRB 3JTYA 4Z3TA 3DA4A 1IZNB 3SY9A 3VZUX 3SYSA 5DL6A 1Q9FA 4AYMC 5AFUL 2XE1A 3AA0A 4AUIA 3HWBA 3V8UA 4LSFA 2X27X 2KZ7B 3KVDD 4FZLA 2XTRA 1HXXA 2KXPA 4N59A 4AYDC 4E1TA 1Q9GA 3C5OA 2K0LA 3SYBA 4LSEA 2K4TA 1ZHXA 2MHLA 1GFPA 3O0EA 3NSGA 2XMXA 5G26A 1GFOA 1E54A 4FSPA 3WI4A 4AKRA 1MM5A 2JMMA 4B61A 1HXTA 4O3YA 2ERVA 1GFQA 3DA3A 3AAAA 3AAEB 3SZVA 1H6S1 6PRNA 5FVNA 3RBHA 4FZNA 3PRNA 2J4UP 4GCPA 4XNLA 4XNKA 1ZHZA 3T0SA 2F1VA 4O3WA 3TZGA 3HW9A 4O4XA 4JCHA 3AA1B 1ORMA 5ADXK 4RJXA 3GP6A 4O3ZA 4D65A 1ZHYA 4C69X 4GF4A 5T5FA 3HOLA 3UU2A 2J1NA 4KRAA 2Y0LA 2Y2XA 4RLCA 3AAEA 3LK41 2W80C 4AKMA 3VZWX 4FSOA 3VY9X 1BT9A 2XE5A 3AA6B 5DL7A 4AZLA 4FRTA 1GFMA 4D64A 1IZNA 1PHOA 1YS5A 2KC0A 3AA7B 3PQSA 5IYUA 1P4TA 3QRAA 2ZFGA 3A2SX 4N58A 4E1SA 3LK2B 3SZDA 2KZ7A 2XTQA 3AA1A 4LSIA 4BUMX 2FGRA 3WI5A 3G7GA 1QJ8A 4FUVA 2XE3A 7PRNA 2PORA 5EE2A 4U9CA 4FESA 4GHBA 4RJWA 4KR8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OSM A;  5PRN A;  3T20 A;  4D5U A;  4GCS A;  3POX A;  1BH3 A;  2Y0H A;  3POU A;  3VZT X;  2QTK A;  5DL8 A;  3T24 A;  2XE2 A;  4FMS A;  3EMN X;  2O4V A;  2FGQ X;  1HXU A;  4LSH A;  2PRN A;  4FOZ A;  2ZLD A;  3POR A;  4FT6 A;  5DL5 A;  4GCQ A;  3UPG A;  4KR4 A;  1OPF A;  8PRN A;  1PRN A;  4FRX A;  1MPF A;  2ODJ A;  2OMF A;  3POQ A;  5JDP A;  3SY7 A;  2Y0K A;  4JFB A;  3VY8 X;  2XG6 A;  3K19 A;  1GFN A;  3FYX A;  3JTY A;  3SY9 A;  3VZU X;  3SYS A;  5DL6 A;  2XE1 A;  4AUI A;  3HWB A;  4LSF A;  1HXX A;  3SYB A;  4LSE A;  2K4T A;  1GFP A;  3O0E A;  3NSG A;  1GFO A;  1E54 A;  4FSP A;  3WI4 A;  1HXT A;  1GFQ A;  3SZV A;  1H6S 1;  6PRN A;  5FVN A;  3PRN A;  2J4U P;  4GCP A;  3T0S A;  3HW9 A;  4RJX A;  4D65 A;  4C69 X;  3UU2 A;  2J1N A;  4KRA A;  2Y0L A;  2Y2X A;  3VZW X;  4FSO A;  3VY9 X;  1BT9 A;  2XE5 A;  5DL7 A;  4FRT A;  1GFM A;  4D64 A;  1PHO A;  2ZFG A;  3A2S X;  3SZD A;  4LSI A;  4BUM X;  2FGR A;  3WI5 A;  2XE3 A;  7PRN A;  2POR A;  4RJW A;  4KR8 A; 
#chains in the Genus database with same CATH topology
 1G90 A;  5TIS O;  4O3X B;  3VE2 A;  5AFU K;  3PGR A;  2LHF A;  4G76 A;  5GV0 A;  1OSM A;  3DWN A;  2GE4 A;  5PRN A;  3AA7 A;  3T20 A;  2MNH A;  2KXP B;  5G39 A;  3HOE A;  4D5U A;  1ZHW A;  1BXW A;  1QJ9 A;  2WVP A;  4GCS A;  3LK2 A;  3POX A;  4PUX A;  4RL9 A;  1BH3 A;  1S5L O;  2N2M A;  4QQ1 A;  2Y0H A;  2F1T A;  3POU A;  3VZT X;  2QTK A;  4RLB A;  2IWW A;  2R4P A;  2M07 A;  5DL8 A;  3KZI O;  3T24 A;  2XE2 A;  2WJR A;  4K3B A;  2YPV A;  4FMS A;  5ADX L;  1MM4 A;  2O4V A;  2FGQ X;  3EMN X;  5D5D A;  3AAA B;  1HXU A;  2M06 A;  2PRN A;  4LSH A;  2W81 C;  3LK3 B;  4FOZ A;  2Y7S A;  4AYN A;  2IWV A;  2R4L A;  3BS0 A;  4O4U A;  2ZLD A;  3POR A;  3QRC A;  2KDY A;  4FT6 A;  4GCQ A;  5DL5 A;  4F4B A;  3UPG A;  4UB8 O;  4KR4 A;  1OPF A;  3UAQ A;  2JQY A;  3AA6 A;  4G75 A;  8PRN A;  3LK4 2;  1PRN A;  3AA0 B;  4FRX A;  1MPF A;  3VE1 A;  2LFU A;  4FZM A;  2YNK A;  2ODJ A;  2OMF A;  1QJP A;  3POQ A;  4AYI D;  5JDP A;  3PQU A;  1T16 A;  1ZHT A;  3SY7 A;  3PGU A;  2Y0K A;  4K3C A;  4JFB A;  2F1C X;  5GTI O;  3VY8 X;  2N2L A;  4AFK A;  4O49 A;  2XG6 A;  3K19 A;  5GTH O;  1GFN A;  4AYE C;  3LK3 A;  5H2F O;  3NJT A;  1THQ A;  3FYX A;  1T1L A;  4AKR B;  3JTY A;  4Z3T A;  3DA4 A;  3PGS A;  1IZN B;  3SY9 A;  3VZU X;  4UB6 O;  3A0H O;  3DWO X;  3SYS A;  5DL6 A;  1Q9F A;  4C4V B;  4AYM C;  5AFU L;  2XE1 A;  2R88 A;  3AA0 A;  4AUI A;  3HWB A;  3V8U A;  4C00 A;  2AXT O;  4LSF A;  2X27 X;  2KZ7 B;  3KVD D;  4FZL A;  1HXX A;  2XTR A;  2KXP A;  4N59 A;  4AYD C;  4E1T A;  1Q9G A;  5B5E O;  3C5O A;  2K0L A;  3SYB A;  4LSE A;  2K4T A;  1ZHX A;  2MHL A;  1GFP A;  3O0E A;  3NSG A;  2XMX A;  5G26 A;  1GFO A;  1E54 A;  4FSP A;  3WI4 A;  4AKR A;  1MM5 A;  2JMM A;  4B61 A;  1HXT A;  4PR7 A;  4O3Y A;  2ERV A;  1GFQ A;  3DA3 A;  3AAA A;  3AAE B;  3JCU O;  4FQE A;  3SZV A;  1H6S 1;  6PRN A;  5FVN A;  3RBH A;  4FZN A;  3PRN A;  5G38 A;  5E79 O;  2J4U P;  4GCP A;  3A0B O;  4XNL A;  2X9K A;  4XNK A;  1ZHZ A;  3T0S A;  2F1V A;  4O3W A;  3TZG A;  3HW9 A;  4O4X A;  4JCH A;  3AA1 B;  1ORM A;  2R4N A;  3BRY A;  3GP6 A;  4O3Z A;  4RJX A;  5ADX K;  4D65 A;  1ZHY A;  4C69 X;  4GF4 A;  5T5F A;  3HOL A;  3UU2 A;  2J1N A;  3WU2 O;  4KRA A;  2Y0L A;  2Y2X A;  4PJ0 O;  4RLC A;  3AAE A;  3LK4 1;  2W80 C;  4AKM A;  3VZW X;  4FSO A;  3VY9 X;  1BT9 A;  2R8A A;  2XE5 A;  3AA6 B;  5DL7 A;  4N74 A;  2R4O A;  4AZL A;  4FRT A;  1GFM A;  2R89 A;  4D64 A;  1IZN A;  1PHO A;  1YS5 A;  2KC0 A;  3AA7 B;  3PQS A;  5IYU A;  3DZM A;  1P4T A;  3QRA A;  4C4V A;  2ZFG A;  3PF1 A;  3A2S X;  4N75 A;  4CTD A;  4N58 A;  4E1S A;  3LK2 B;  3SZD A;  2KZ7 A;  2XTQ A;  3AA1 A;  4LSI A;  5KAI O;  4BUM X;  2FGR A;  3WI5 A;  4IL6 O;  3BRZ A;  3G7G A;  1QJ8 A;  4FUV A;  5KAF O;  2XE3 A;  2WJQ A;  7PRN A;  2POR A;  5EE2 A;  4U9C A;  4FES A;  5G3A A;  4GHB A;  4RJW A;  4KR8 A;  5B66 O; 
#chains in the Genus database with same CATH homology
 1G90 A;  4O3X B;  3VE2 A;  5AFU K;  2LHF A;  4G76 A;  5GV0 A;  1OSM A;  5PRN A;  2GE4 A;  3AA7 A;  3T20 A;  2MNH A;  2KXP B;  3HOE A;  4D5U A;  1ZHW A;  1BXW A;  1QJ9 A;  4GCS A;  3LK2 A;  3POX A;  4PUX A;  4RL9 A;  1BH3 A;  2N2M A;  4QQ1 A;  2Y0H A;  2F1T A;  3POU A;  3VZT X;  2QTK A;  4RLB A;  5DL8 A;  2M07 A;  3T24 A;  2XE2 A;  2YPV A;  4FMS A;  5ADX L;  1MM4 A;  2O4V A;  2FGQ X;  3EMN X;  5D5D A;  3AAA B;  1HXU A;  2M06 A;  2PRN A;  4LSH A;  2W81 C;  3LK3 B;  4FOZ A;  2Y7S A;  4AYN A;  4O4U A;  2ZLD A;  3POR A;  3QRC A;  2KDY A;  4FT6 A;  4GCQ A;  5DL5 A;  4F4B A;  3UPG A;  4KR4 A;  1OPF A;  3UAQ A;  3AA6 A;  8PRN A;  4G75 A;  3LK4 2;  1PRN A;  3AA0 B;  4FRX A;  1MPF A;  3VE1 A;  2LFU A;  4FZM A;  2YNK A;  2ODJ A;  2OMF A;  1QJP A;  3POQ A;  4AYI D;  5JDP A;  3PQU A;  1ZHT A;  3SY7 A;  2Y0K A;  4JFB A;  3VY8 X;  2N2L A;  4AFK A;  4O49 A;  2XG6 A;  3K19 A;  1GFN A;  4AYE C;  3LK3 A;  1THQ A;  3FYX A;  4AKR B;  3JTY A;  4Z3T A;  3DA4 A;  1IZN B;  3SY9 A;  3VZU X;  3SYS A;  5DL6 A;  1Q9F A;  4AYM C;  5AFU L;  2XE1 A;  3AA0 A;  4AUI A;  3HWB A;  3V8U A;  4LSF A;  2X27 X;  2KZ7 B;  3KVD D;  4FZL A;  2XTR A;  1HXX A;  2KXP A;  4N59 A;  4AYD C;  4E1T A;  1Q9G A;  3C5O A;  2K0L A;  3SYB A;  4LSE A;  2K4T A;  1ZHX A;  2MHL A;  1GFP A;  3O0E A;  3NSG A;  2XMX A;  5G26 A;  1GFO A;  1E54 A;  4FSP A;  3WI4 A;  4AKR A;  1MM5 A;  2JMM A;  4B61 A;  1HXT A;  4O3Y A;  2ERV A;  1GFQ A;  3DA3 A;  3AAA A;  3AAE B;  3SZV A;  1H6S 1;  6PRN A;  5FVN A;  3RBH A;  4FZN A;  3PRN A;  2J4U P;  4GCP A;  4XNL A;  4XNK A;  1ZHZ A;  3T0S A;  2F1V A;  4O3W A;  3TZG A;  3HW9 A;  4O4X A;  4JCH A;  3AA1 B;  1ORM A;  5ADX K;  4RJX A;  3GP6 A;  4O3Z A;  4D65 A;  1ZHY A;  4C69 X;  4GF4 A;  5T5F A;  3HOL A;  3UU2 A;  2J1N A;  4KRA A;  2Y0L A;  2Y2X A;  4RLC A;  3AAE A;  3LK4 1;  2W80 C;  4AKM A;  3VZW X;  4FSO A;  3VY9 X;  1BT9 A;  2XE5 A;  3AA6 B;  5DL7 A;  4AZL A;  4FRT A;  1GFM A;  4D64 A;  1IZN A;  1PHO A;  1YS5 A;  2KC0 A;  3AA7 B;  3PQS A;  5IYU A;  1P4T A;  3QRA A;  2ZFG A;  3A2S X;  4N58 A;  4E1S A;  3LK2 B;  3SZD A;  2KZ7 A;  2XTQ A;  3AA1 A;  4LSI A;  4BUM X;  2FGR A;  3WI5 A;  3G7G A;  1QJ8 A;  4FUV A;  2XE3 A;  7PRN A;  2POR A;  5EE2 A;  4U9C A;  4FES A;  4GHB A;  4RJW A;  4KR8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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