2FGRA

High resolution xray structure of omp32
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
332
structure length
332
Chain Sequence
ESSVTLFGIVDTNVAYVNKDAAGDSRYGLGTSGASTSRLGLRGTEDLGGGLKAGFWLEGEIFGDDGNASGFNFKRRSTVSLSGNFGEVRLGRDLVPTSQKLTSYDLFSATGIGPFMGFRNWAAGQGADDNGIRANNLISYYTPNFGGFNAGFGYAFDEKQTIGTADSVGRYIGGYVAYDNGPLSASLGLAQQKTAVGGLATDRDEITLGASYNFGVAKLSGLLQQTKFKRDIGGDIKTNSYMLGASAPVGGVGEVKLQYALYDQKAIDSKAHQITLGYVHNLSKRTALYGNLAFLKNKDASTLGLQAKGVYAGGVQAGESQTGVQVGIRHAF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
publication title High resolution crystal structures and molecular dynamics studies reveal substrate binding in the porin omp32
pubmed doi rcsb
molecule keywords Outer membrane porin protein 32
total genus 92
structure length 332
sequence length 332
ec nomenclature
pdb deposition date 2005-12-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 2fgrA00
3PORA 2QTKA 4FRXA 4RJWA 2ZLDA 3SZDA 5DL5A 3PRNA 2FGQX 4LSIA 3SY7A 1GFMA 2XG6A 3A2SX 2ZFGA 4BUMX 4FT6A 4FRTA 2PRNA 4FSPA 3T24A 4C69X 1H6S1 5DL8A 4GCPA 4FMSA 2K4TA 1HXXA 1PHOA 3T0SA 2ODJA 3O0EA 1HXUA 4FSOA 1GFPA 4FOZA 4D64A 2Y0KA 2Y0LA 3HW9A 4GCQA 2XE3A 3VZWX 5FVNA 1BH3A 4LSEA 1OPFA 3POQA 3FYXA 3POXA 2XE1A 4D65A 3SY9A 2Y2XA 8PRNA 3K19A 3JTYA 1GFNA 1MPFA 1GFOA 3SYSA 3VY9X 2O4VA 3NSGA 3WI5A 2FGRA 4GCSA 4KRAA 3UPGA 3POUA 2XE5A 4LSFA 3UU2A 1HXTA 2PORA 3SZVA 4KR4A 2XE2A 2OMFA 5PRNA 1E54A 1GFQA 3VZUX 2Y0HA 4LSHA 3EMNX 5JDPA 3T20A 1PRNA 3WI4A 2J4UP 3HWBA 1BT9A 4JFBA 4D5UA 5DL7A 6PRNA 7PRNA 3SYBA 3VZTX 4KR8A 4RJXA 3VY8X 5DL6A 2J1NA 1OSMA 4AUIA
chains in the Genus database with same CATH superfamily
3PORA 4AKMA 3BS0A 2QTKA 2XTRA 3LK42 3PGSA 2N2LA 4FZNA 5G38A 2KZ7B 3PGUA 4FRXA 2R8AA 4RJWA 2R4PA 1ZHTA 2ZLDA 3BRZA 4O3WA 8PRNA 3BRYA 3HOEA 3SZDA 5IYUA 2N2MA 4RL9A 3PRNA 1YS5A 5DL5A 2FGQX 4LSIA 3AA7A 4G75A 4GHBA 3SY7A 1IZNA 1GFMA 2XG6A 3A2SX 2ZFGA 3QRAA 4BUMX 4FT6A 3AAAA 3AAEA 2AXTO 4O3XB 5GTHO 3AA7B 2R4LA 4FRTA 5KAIO 2PRNA 4O49A 1P4TA 4FSPA 3G7GA 2F1TA 3A0HO 4UB6O 4PJ0O 4F4BA 3T24A 5KAFO 4C69X 1H6S1 2F1VA 4GCPA 5DL8A 1G90A 1T1LA 2LFUA 2R88A 3AAAB 3AAEB 3PGRA 4FMSA 2K4TA 4E1TA 3DA3A 3LK41 4FESA 4K3BA 5TISO 2WVPA 1HXXA 3PQSA 5B5EO 5GV0A 1PHOA 1ZHXA 2K0LA 4FZLA 4AYDC 3T0SA 2ODJA 2XMXA 4N58A 3RBHA 3O0EA 1HXUA 1ZHZA 4FSOA 4N75A 5E79O 1GFPA 2MNHA 4FOZA 4O3ZA 1MM5A 4D64A 1QJPA 2Y0KA 2KC0A 2Y0LA 3AA1A 3HW9A 4GF4A 5ADXK 4GCQA 2WJRA 1MM4A 1QJ8A 4G76A 1ORMA 2XE3A 3LK3A 1BXWA 4FZMA 4PUXA 1Q9FA 4PR7A 4U9CA 4UB8O 3VZWX 4C00A 1IZNB 5FVNA 5EE2A 1BH3A 2M06A 4LSEA 5G26A 4JCHA 2M07A 4Z3TA 4AFKA 4IL6O 2R4NA 4XNKA 3VE2A 1OPFA 3POQA 2X9KA 3A0BO 4O4XA 3VE1A 5ADXL 4XNLA 1QJ9A 3DWNA 3FYXA 3POXA 3UAQA 4AYMC 3TZGA 2XE1A 5AFUK 4D65A 2R4OA 2Y2XA 3LK2A 3K19A 3SY9A 3JTYA 1GFNA 1ZHYA 4RLCA 4CTDA 4O3YA 1MPFA 1GFOA 2R89A 3SYSA 2F1CX 3WU2O 3VY9X 4C4VA 3GP6A 2O4VA 3NSGA 3PQUA 3WI5A 2FGRA 1ZHWA 4GCSA 4KRAA 2KXPA 2YNKA 3DWOX 5D5DA 3UPGA 3LK2B 3POUA 2GE4A 3KVDD 4FQEA 4N74A 1THQA 5AFUL 5H2FO 2XE5A 4LSFA 3UU2A 4C4VB 5B66O 4FUVA 1T16A 4E1SA 1HXTA 4B61A 2KXPB 2MHLA 2PORA 1Q9GA 5G3AA 3SZVA 3AA1B 2W80C 3AA0A 3AA6A 4KR4A 4RLBA 3QRCA 2XE2A 3NJTA 2OMFA 3PF1A 2X27X 5PRNA 3LK3B 1E54A 1GFQA 4K3CA 3VZUX 4AYID 5G39A 2Y0HA 4LSHA 2JMMA 3EMNX 5JDPA 4QQ1A 3T20A 2JQYA 3AA6B 1PRNA 3AA0B 3DA4A 4AKRA 3WI4A 2J4UP 2LHFA 2Y7SA 3HWBA 3JCUO 1BT9A 3C5OA 5GTIO 4JFBA 4AZLA 4D5UA 2ERVA 2YPVA 2XTQA 5DL7A 6PRNA 7PRNA 4AYEC 4O4UA 2WJQA 3SYBA 4AKRB 4AYNA 3VZTX 4N59A 3V8UA 3HOLA 3KZIO 4KR8A 5T5FA 2KDYA 4RJXA 2KZ7A 3VY8X 1S5LO 2W81C 2J1NA 5DL6A 1OSMA 3DZMA 2IWWA 4AUIA 2IWVA
chains in the Genus database with same CATH topology
3PORA 4AKMA 2QTKA 2XTRA 3LK42 4FZNA 2N2LA 2KZ7B 4FRXA 4RJWA 1ZHTA 2ZLDA 4O3WA 5IYUA 3HOEA 3SZDA 2N2MA 4RL9A 3PRNA 1YS5A 5DL5A 2FGQX 4LSIA 3AA7A 4G75A 4GHBA 3SY7A 1IZNA 1GFMA 2XG6A 3A2SX 2ZFGA 3QRAA 4BUMX 4FT6A 3AAAA 3AAEA 4O3XB 3AA7B 4FRTA 2PRNA 4O49A 1P4TA 4FSPA 3G7GA 2F1TA 4F4BA 3T24A 4C69X 1H6S1 2F1VA 4GCPA 5DL8A 1G90A 2LFUA 3AAAB 3AAEB 4FMSA 4E1TA 2K4TA 3DA3A 3LK41 4FESA 5GV0A 3PQSA 1HXXA 1PHOA 1ZHXA 2K0LA 4FZLA 4AYDC 3T0SA 2ODJA 2XMXA 4N58A 3RBHA 3O0EA 1HXUA 1ZHZA 4FSOA 1GFPA 2MNHA 4FOZA 4O3ZA 1MM5A 4D64A 1QJPA 2Y0KA 2KC0A 2Y0LA 3AA1A 3HW9A 4GF4A 5ADXK 4GCQA 1MM4A 1QJ8A 4G76A 1ORMA 2XE3A 3LK3A 1BXWA 4FZMA 4PUXA 1Q9FA 4U9CA 3VZWX 1IZNB 5FVNA 5EE2A 1BH3A 2M06A 4LSEA 5G26A 4JCHA 2M07A 4Z3TA 4AFKA 3VE2A 4XNKA 1OPFA 3POQA 4O4XA 3VE1A 5ADXL 4XNLA 1QJ9A 3FYXA 3POXA 3UAQA 4AYMC 3TZGA 2XE1A 5AFUK 4D65A 3SY9A 2Y2XA 3LK2A 3K19A 8PRNA 3JTYA 1GFNA 1ZHYA 4RLCA 4O3YA 1MPFA 1GFOA 3SYSA 3VY9X 3GP6A 2O4VA 3NSGA 3PQUA 3WI5A 2FGRA 1ZHWA 4GCSA 4KRAA 2KXPA 2YNKA 5D5DA 3UPGA 3LK2B 3POUA 2GE4A 3KVDD 1THQA 5AFUL 2XE5A 4LSFA 3UU2A 4FUVA 4E1SA 1HXTA 4B61A 2KXPB 2MHLA 2PORA 1Q9GA 3SZVA 3AA1B 2W80C 3AA0A 3AA6A 4KR4A 4RLBA 3QRCA 2XE2A 2OMFA 4AYID 2X27X 5PRNA 3LK3B 1E54A 1GFQA 3VZUX 2Y0HA 4LSHA 2JMMA 3EMNX 5JDPA 4QQ1A 3T20A 3AA6B 1PRNA 3AA0B 3DA4A 4AKRA 3WI4A 2J4UP 2LHFA 2Y7SA 3HWBA 1BT9A 3C5OA 4JFBA 4AZLA 4D5UA 2ERVA 2YPVA 2XTQA 5DL7A 6PRNA 7PRNA 4AYEC 4O4UA 3SYBA 4AKRB 4AYNA 3VZTX 4N59A 3V8UA 3HOLA 4KR8A 5T5FA 2KDYA 4RJXA 2KZ7A 3VY8X 2W81C 2J1NA 5DL6A 1OSMA 4AUIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3POR A;  2QTK A;  4FRX A;  4RJW A;  2ZLD A;  3SZD A;  5DL5 A;  3PRN A;  2FGQ X;  4LSI A;  3SY7 A;  1GFM A;  2XG6 A;  3A2S X;  2ZFG A;  4BUM X;  4FT6 A;  4FRT A;  2PRN A;  4FSP A;  3T24 A;  4C69 X;  1H6S 1;  5DL8 A;  4GCP A;  4FMS A;  2K4T A;  1HXX A;  1PHO A;  3T0S A;  2ODJ A;  3O0E A;  1HXU A;  4FSO A;  1GFP A;  4FOZ A;  4D64 A;  2Y0K A;  2Y0L A;  3HW9 A;  4GCQ A;  2XE3 A;  3VZW X;  5FVN A;  1BH3 A;  4LSE A;  1OPF A;  3POQ A;  3FYX A;  3POX A;  2XE1 A;  4D65 A;  3SY9 A;  2Y2X A;  8PRN A;  3K19 A;  3JTY A;  1GFN A;  1MPF A;  1GFO A;  3SYS A;  3VY9 X;  2O4V A;  3NSG A;  3WI5 A;  2FGR A;  4GCS A;  4KRA A;  3UPG A;  3POU A;  2XE5 A;  4LSF A;  3UU2 A;  1HXT A;  2POR A;  3SZV A;  4KR4 A;  2XE2 A;  2OMF A;  5PRN A;  1E54 A;  1GFQ A;  3VZU X;  2Y0H A;  4LSH A;  3EMN X;  5JDP A;  3T20 A;  1PRN A;  3WI4 A;  2J4U P;  3HWB A;  1BT9 A;  4JFB A;  4D5U A;  5DL7 A;  6PRN A;  7PRN A;  3SYB A;  3VZT X;  4KR8 A;  4RJX A;  3VY8 X;  5DL6 A;  2J1N A;  1OSM A;  4AUI A; 
#chains in the Genus database with same CATH topology
 3POR A;  4AKM A;  3BS0 A;  2QTK A;  2XTR A;  3LK4 2;  3PGS A;  2N2L A;  4FZN A;  5G38 A;  2KZ7 B;  3PGU A;  4FRX A;  2R8A A;  4RJW A;  2R4P A;  1ZHT A;  2ZLD A;  3BRZ A;  4O3W A;  8PRN A;  3BRY A;  3HOE A;  3SZD A;  5IYU A;  2N2M A;  4RL9 A;  3PRN A;  1YS5 A;  5DL5 A;  2FGQ X;  4LSI A;  3AA7 A;  4G75 A;  4GHB A;  3SY7 A;  1IZN A;  1GFM A;  2XG6 A;  3A2S X;  2ZFG A;  3QRA A;  4BUM X;  4FT6 A;  3AAA A;  3AAE A;  2AXT O;  4O3X B;  5GTH O;  3AA7 B;  2R4L A;  4FRT A;  5KAI O;  2PRN A;  4O49 A;  1P4T A;  4FSP A;  3G7G A;  2F1T A;  3A0H O;  4UB6 O;  4PJ0 O;  4F4B A;  3T24 A;  5KAF O;  4C69 X;  1H6S 1;  2F1V A;  4GCP A;  5DL8 A;  1G90 A;  1T1L A;  2LFU A;  2R88 A;  3AAA B;  3AAE B;  3PGR A;  4FMS A;  2K4T A;  4E1T A;  3DA3 A;  3LK4 1;  4FES A;  4K3B A;  5TIS O;  2WVP A;  1HXX A;  3PQS A;  5B5E O;  5GV0 A;  1PHO A;  1ZHX A;  2K0L A;  4FZL A;  4AYD C;  3T0S A;  2ODJ A;  2XMX A;  4N58 A;  3RBH A;  3O0E A;  1HXU A;  1ZHZ A;  4FSO A;  4N75 A;  5E79 O;  1GFP A;  2MNH A;  4FOZ A;  4O3Z A;  1MM5 A;  4D64 A;  1QJP A;  2Y0K A;  2KC0 A;  2Y0L A;  3AA1 A;  3HW9 A;  4GF4 A;  5ADX K;  4GCQ A;  2WJR A;  1MM4 A;  1QJ8 A;  4G76 A;  1ORM A;  2XE3 A;  3LK3 A;  1BXW A;  4FZM A;  4PUX A;  1Q9F A;  4PR7 A;  4U9C A;  4UB8 O;  3VZW X;  4C00 A;  1IZN B;  5FVN A;  5EE2 A;  1BH3 A;  2M06 A;  4LSE A;  5G26 A;  4JCH A;  2M07 A;  4Z3T A;  4AFK A;  4IL6 O;  2R4N A;  4XNK A;  3VE2 A;  1OPF A;  3POQ A;  2X9K A;  3A0B O;  4O4X A;  3VE1 A;  5ADX L;  4XNL A;  1QJ9 A;  3DWN A;  3FYX A;  3POX A;  3UAQ A;  4AYM C;  3TZG A;  2XE1 A;  5AFU K;  4D65 A;  2R4O A;  2Y2X A;  3LK2 A;  3K19 A;  3SY9 A;  3JTY A;  1GFN A;  1ZHY A;  4RLC A;  4CTD A;  4O3Y A;  1MPF A;  1GFO A;  2R89 A;  3SYS A;  2F1C X;  3WU2 O;  3VY9 X;  4C4V A;  3GP6 A;  2O4V A;  3NSG A;  3PQU A;  3WI5 A;  2FGR A;  1ZHW A;  4GCS A;  4KRA A;  2KXP A;  2YNK A;  3DWO X;  5D5D A;  3UPG A;  3LK2 B;  3POU A;  2GE4 A;  3KVD D;  4FQE A;  4N74 A;  1THQ A;  5AFU L;  5H2F O;  2XE5 A;  4LSF A;  3UU2 A;  4C4V B;  5B66 O;  4FUV A;  1T16 A;  4E1S A;  1HXT A;  4B61 A;  2KXP B;  2MHL A;  2POR A;  1Q9G A;  5G3A A;  3SZV A;  3AA1 B;  2W80 C;  3AA0 A;  3AA6 A;  4KR4 A;  4RLB A;  3QRC A;  2XE2 A;  3NJT A;  2OMF A;  3PF1 A;  2X27 X;  5PRN A;  3LK3 B;  1E54 A;  1GFQ A;  4K3C A;  3VZU X;  4AYI D;  5G39 A;  2Y0H A;  4LSH A;  2JMM A;  3EMN X;  5JDP A;  4QQ1 A;  3T20 A;  2JQY A;  3AA6 B;  1PRN A;  3AA0 B;  3DA4 A;  4AKR A;  3WI4 A;  2J4U P;  2LHF A;  2Y7S A;  3HWB A;  3JCU O;  1BT9 A;  3C5O A;  5GTI O;  4JFB A;  4AZL A;  4D5U A;  2ERV A;  2YPV A;  2XTQ A;  5DL7 A;  6PRN A;  7PRN A;  4AYE C;  4O4U A;  2WJQ A;  3SYB A;  4AKR B;  4AYN A;  3VZT X;  4N59 A;  3V8U A;  3HOL A;  3KZI O;  4KR8 A;  5T5F A;  2KDY A;  4RJX A;  2KZ7 A;  3VY8 X;  1S5L O;  2W81 C;  2J1N A;  5DL6 A;  1OSM A;  3DZM A;  2IWW A;  4AUI A;  2IWV A; 
#chains in the Genus database with same CATH homology
 3POR A;  4AKM A;  2QTK A;  2XTR A;  3LK4 2;  4FZN A;  2N2L A;  2KZ7 B;  4FRX A;  4RJW A;  1ZHT A;  2ZLD A;  4O3W A;  5IYU A;  3HOE A;  3SZD A;  2N2M A;  4RL9 A;  3PRN A;  1YS5 A;  5DL5 A;  2FGQ X;  4LSI A;  3AA7 A;  4G75 A;  4GHB A;  3SY7 A;  1IZN A;  1GFM A;  2XG6 A;  3A2S X;  2ZFG A;  3QRA A;  4BUM X;  4FT6 A;  3AAA A;  3AAE A;  4O3X B;  3AA7 B;  4FRT A;  2PRN A;  4O49 A;  1P4T A;  4FSP A;  3G7G A;  2F1T A;  4F4B A;  3T24 A;  4C69 X;  1H6S 1;  2F1V A;  4GCP A;  5DL8 A;  1G90 A;  2LFU A;  3AAA B;  3AAE B;  4FMS A;  4E1T A;  2K4T A;  3DA3 A;  3LK4 1;  4FES A;  5GV0 A;  3PQS A;  1HXX A;  1PHO A;  1ZHX A;  2K0L A;  4FZL A;  4AYD C;  3T0S A;  2ODJ A;  2XMX A;  4N58 A;  3RBH A;  3O0E A;  1HXU A;  1ZHZ A;  4FSO A;  1GFP A;  2MNH A;  4FOZ A;  4O3Z A;  1MM5 A;  4D64 A;  1QJP A;  2Y0K A;  2KC0 A;  2Y0L A;  3AA1 A;  3HW9 A;  4GF4 A;  5ADX K;  4GCQ A;  1MM4 A;  1QJ8 A;  4G76 A;  1ORM A;  2XE3 A;  3LK3 A;  1BXW A;  4FZM A;  4PUX A;  1Q9F A;  4U9C A;  3VZW X;  1IZN B;  5FVN A;  5EE2 A;  1BH3 A;  2M06 A;  4LSE A;  5G26 A;  4JCH A;  2M07 A;  4Z3T A;  4AFK A;  3VE2 A;  4XNK A;  1OPF A;  3POQ A;  4O4X A;  3VE1 A;  5ADX L;  4XNL A;  1QJ9 A;  3FYX A;  3POX A;  3UAQ A;  4AYM C;  3TZG A;  2XE1 A;  5AFU K;  4D65 A;  3SY9 A;  2Y2X A;  3LK2 A;  3K19 A;  8PRN A;  3JTY A;  1GFN A;  1ZHY A;  4RLC A;  4O3Y A;  1MPF A;  1GFO A;  3SYS A;  3VY9 X;  3GP6 A;  2O4V A;  3NSG A;  3PQU A;  3WI5 A;  2FGR A;  1ZHW A;  4GCS A;  4KRA A;  2KXP A;  2YNK A;  5D5D A;  3UPG A;  3LK2 B;  3POU A;  2GE4 A;  3KVD D;  1THQ A;  5AFU L;  2XE5 A;  4LSF A;  3UU2 A;  4FUV A;  4E1S A;  1HXT A;  4B61 A;  2KXP B;  2MHL A;  2POR A;  1Q9G A;  3SZV A;  3AA1 B;  2W80 C;  3AA0 A;  3AA6 A;  4KR4 A;  4RLB A;  3QRC A;  2XE2 A;  2OMF A;  4AYI D;  2X27 X;  5PRN A;  3LK3 B;  1E54 A;  1GFQ A;  3VZU X;  2Y0H A;  4LSH A;  2JMM A;  3EMN X;  5JDP A;  4QQ1 A;  3T20 A;  3AA6 B;  1PRN A;  3AA0 B;  3DA4 A;  4AKR A;  3WI4 A;  2J4U P;  2LHF A;  2Y7S A;  3HWB A;  1BT9 A;  3C5O A;  4JFB A;  4AZL A;  4D5U A;  2ERV A;  2YPV A;  2XTQ A;  5DL7 A;  6PRN A;  7PRN A;  4AYE C;  4O4U A;  3SYB A;  4AKR B;  4AYN A;  3VZT X;  4N59 A;  3V8U A;  3HOL A;  4KR8 A;  5T5F A;  2KDY A;  4RJX A;  2KZ7 A;  3VY8 X;  2W81 C;  2J1N A;  5DL6 A;  1OSM A;  4AUI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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