2FHQA

Crystal structure of general stress protein from bacteroides thetaiotaomicron
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
135
structure length
135
Chain Sequence
TKTMKEKAVELLQKCEVVTLASVNKEGYPRPVPMSKIAAEGISTIWMSTGADSLKTIDFLSNPKAGLCFQEKGDSVALMGEVEVVTDEKLKQELWQDWFIEHFPGGPTDPGYVLLKFTANHATYWIEGTFIHKKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of General Stress Protein from Bacteroides thetaiotaomicron
rcsb
molecule tags Structural genomics, unknown function
source organism Bacteroides thetaiotaomicron
molecule keywords putative general stress protein
total genus 27
structure length 135
sequence length 135
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-12-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 2fhqA00
3DMBA 4IRAA 2X1JA 3HY8A 1WGBA 5ESCA 3R5PA 3VY2A 1YLNA 2A2JA 3KYGA 4R82A 2QCKA 3AMFA 4XHYA 4QVBA 3F7EA 2HTDA 3VYAA 4HMTA 2E83A 3U5WA 1YOAA 1G78A 2D37A 2HQ7A 1W3PA 1EJEA 2X1KA 3B5MA 2RDEA 1AXJA 3R5RA 5CHEC 5BNCA 1USCA 1I0SA 3EC6A 2VPAA 3K88A 4HMXA 3A6RA 1I0RA 3FKHA 1WLKA 5JABA 3ZOFA 3AWHA 3KYFA 1G79A 1CI0A 3ZOEA 3FGEA 3RH7A 2D36A 2IG6A 2FG9A 2IABA 3E4VA 3VY5A 1WV4A 1RZ1A 4HX6A 4XJ2A 2ARZA 1USFA 2RE7A 3ZOCA 4L82A 3TGVA 2QEAA 5CHOA 2ASFA 2I02A 2Q9KA 3BPKA 4Z85A 1WLIA 3A20A 3DB0A 2FHQA 3H96A 3R5ZA 3ZOHA 3CB0A 2NR4A 2FURA 3A6QA 1W3RA 2ECUA 1RFEA 1NRGA 1FLMA 2HTIA 3U34A 4Y9IA 1W3OA 2R0XA 3CP3A 2ECRA 3BA3A 3DNHA 3GASA 1VL7A 2D38A 3U0IA 2AQ6A 1XHNA 1W9AA 2HHZA 3ZODA 3ZOGA 1Y30A 3SWJA 2OL5A 3PFTA 4N7RC 4F07A 2IMLA 1JNWA 1G77A 2GJGA 1XXOA 3HMZA 2ED4A 3K87A 1W3QA 4HMVA 1DNLA 4YBNA 2R6VA 3R5WA 2HQ9A 4YWNA 2PTFA 1G76A 4HMSA 3K86A 4HMWA 3R5LA 3U35A 1T9MA 3R5YA 3NFWA 3IN6A 2D5MA 2OU5A 1TY9A 4ZKYA 3BNKA 2I51A 1RZ0A 4HMUA
chains in the Genus database with same CATH superfamily
3DMBA 4IRAA 2X1JA 3HE1A 3HY8A 1WGBA 5ESCA 3R5PA 3VY2A 1YLNA 2A2JA 3KYGA 4R82A 2QCKA 3AMFA 4XHYA 4QVBA 3F7EA 2HTDA 3VYAA 4HMTA 4MTKA 2E83A 3U5WA 1YOAA 1G78A 2D37A 2HQ7A 1W3PA 1EJEA 2X1KA 3B5MA 2RDEA 1AXJA 3R5RA 5CHEC 1Y12A 5BNCA 1USCA 1I0SA 3EC6A 2VPAA 3K88A 4HMXA 3A6RA 1I0RA 3FKHA 1WLKA 5JABA 3ZOFA 3AWHA 3KYFA 1G79A 1CI0A 3ZOEA 3FGEA 3RH7A 2D36A 2IG6A 2FG9A 2IABA 3E4VA 3VY5A 1WV4A 1RZ1A 4HX6A 4XJ2A 2ARZA 2L1TA 1USFA 2RE7A 3ZOCA 4L82A 3TGVA 2QEAA 5CHOA 3V4HA 2ASFA 2I02A 2Q9KA 3BPKA 4Z85A 1WLIA 3A20A 3DB0A 2FHQA 3H96A 3R5ZA 3ZOHA 3CB0A 2NR4A 2FURA 3A6QA 1W3RA 2P5ZX 2ECUA 1RFEA 1NRGA 1FLMA 2HTIA 3U34A 4Y9IA 1W3OA 2R0XA 3CP3A 2ECRA 3BA3A 3DNHA 3GASA 1VL7A 2D38A 3U0IA 2AQ6A 1XHNA 1W9AA 2HHZA 3ZODA 4TV4A 3ZOGA 1Y30A 3SWJA 2OL5A 3PFTA 2K4QA 4W64A 4N7RC 4F07A 2IMLA 1JNWA 1G77A 2GJGA 1XXOA 2GUJA 3HMZA 2ED4A 3K87A 4UHVA 1W3QA 4HMVA 1DNLA 4YBNA 2R6VA 3R5WA 2HQ9A 4YWNA 2PTFA 1G76A 4HMSA 3K86A 4HMWA 3R5LA 3U35A 3EAAA 1T9MA 3R5YA 3NFWA 3IN6A 2D5MA 2OU5A 4HKHA 1TY9A 4ZKYA 3BNKA 2I51A 1RZ0A 4HMUA
chains in the Genus database with same CATH topology
3DMBA 4IRAA 2X1JA 3HY8A 1WGBA 5ESCA 3R5PA 3VY2A 1YLNA 2A2JA 3KYGA 4R82A 2QCKA 3AMFA 4XHYA 4QVBA 3F7EA 2HTDA 3VYAA 4HMTA 2E83A 3U5WA 1YOAA 1G78A 2D37A 2HQ7A 1W3PA 1EJEA 2X1KA 3B5MA 2RDEA 1AXJA 3R5RA 5CHEC 5BNCA 1USCA 1I0SA 3EC6A 2VPAA 3K88A 4HMXA 3A6RA 1I0RA 3FKHA 1WLKA 5JABA 3ZOFA 3AWHA 3KYFA 1G79A 1CI0A 3ZOEA 3FGEA 3RH7A 2D36A 2IG6A 2FG9A 2IABA 3E4VA 3VY5A 1WV4A 1RZ1A 4HX6A 4XJ2A 2ARZA 1USFA 2RE7A 3ZOCA 4L82A 3TGVA 2QEAA 5CHOA 2ASFA 2I02A 2Q9KA 3BPKA 4Z85A 1WLIA 3A20A 3DB0A 2FHQA 3H96A 3R5ZA 3ZOHA 3CB0A 2NR4A 2FURA 3A6QA 1W3RA 2ECUA 1RFEA 1NRGA 1FLMA 2HTIA 3U34A 4Y9IA 1W3OA 2R0XA 3CP3A 2ECRA 3BA3A 3DNHA 3GASA 1VL7A 2D38A 3U0IA 2AQ6A 1XHNA 1W9AA 2HHZA 3ZODA 3ZOGA 1Y30A 3SWJA 2OL5A 3PFTA 4N7RC 4F07A 2IMLA 1JNWA 1G77A 2GJGA 1XXOA 3HMZA 2ED4A 3K87A 1W3QA 4HMVA 1DNLA 4YBNA 2R6VA 3R5WA 2HQ9A 4YWNA 2PTFA 1G76A 4HMSA 3K86A 4HMWA 3R5LA 3U35A 1T9MA 3R5YA 3NFWA 3IN6A 2D5MA 2OU5A 1TY9A 4ZKYA 3BNKA 2I51A 1RZ0A 4HMUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DMB A;  4IRA A;  2X1J A;  3HY8 A;  1WGB A;  5ESC A;  3R5P A;  3VY2 A;  1YLN A;  2A2J A;  3KYG A;  4R82 A;  2QCK A;  3AMF A;  4XHY A;  4QVB A;  3F7E A;  2HTD A;  3VYA A;  4HMT A;  2E83 A;  3U5W A;  1YOA A;  1G78 A;  2D37 A;  2HQ7 A;  1W3P A;  1EJE A;  2X1K A;  3B5M A;  2RDE A;  1AXJ A;  3R5R A;  5CHE C;  5BNC A;  1USC A;  1I0S A;  3EC6 A;  2VPA A;  3K88 A;  4HMX A;  3A6R A;  1I0R A;  3FKH A;  1WLK A;  5JAB A;  3ZOF A;  3AWH A;  3KYF A;  1G79 A;  1CI0 A;  3ZOE A;  3FGE A;  3RH7 A;  2D36 A;  2IG6 A;  2FG9 A;  2IAB A;  3E4V A;  3VY5 A;  1WV4 A;  1RZ1 A;  4HX6 A;  4XJ2 A;  2ARZ A;  1USF A;  2RE7 A;  3ZOC A;  4L82 A;  3TGV A;  2QEA A;  5CHO A;  2ASF A;  2I02 A;  2Q9K A;  3BPK A;  4Z85 A;  1WLI A;  3A20 A;  3DB0 A;  2FHQ A;  3H96 A;  3R5Z A;  3ZOH A;  3CB0 A;  2NR4 A;  2FUR A;  3A6Q A;  1W3R A;  2ECU A;  1RFE A;  1NRG A;  1FLM A;  2HTI A;  3U34 A;  4Y9I A;  1W3O A;  2R0X A;  3CP3 A;  2ECR A;  3BA3 A;  3DNH A;  3GAS A;  1VL7 A;  2D38 A;  3U0I A;  2AQ6 A;  1XHN A;  1W9A A;  2HHZ A;  3ZOD A;  3ZOG A;  1Y30 A;  3SWJ A;  2OL5 A;  3PFT A;  4N7R C;  4F07 A;  2IML A;  1JNW A;  1G77 A;  2GJG A;  1XXO A;  3HMZ A;  2ED4 A;  3K87 A;  1W3Q A;  4HMV A;  1DNL A;  4YBN A;  2R6V A;  3R5W A;  2HQ9 A;  4YWN A;  2PTF A;  1G76 A;  4HMS A;  3K86 A;  4HMW A;  3R5L A;  3U35 A;  1T9M A;  3R5Y A;  3NFW A;  3IN6 A;  2D5M A;  2OU5 A;  1TY9 A;  4ZKY A;  3BNK A;  2I51 A;  1RZ0 A;  4HMU A; 
#chains in the Genus database with same CATH topology
 3DMB A;  4IRA A;  2X1J A;  3HE1 A;  3HY8 A;  1WGB A;  5ESC A;  3R5P A;  3VY2 A;  1YLN A;  2A2J A;  3KYG A;  4R82 A;  2QCK A;  3AMF A;  4XHY A;  4QVB A;  3F7E A;  2HTD A;  3VYA A;  4HMT A;  4MTK A;  2E83 A;  3U5W A;  1YOA A;  1G78 A;  2D37 A;  2HQ7 A;  1W3P A;  1EJE A;  2X1K A;  3B5M A;  2RDE A;  1AXJ A;  3R5R A;  5CHE C;  1Y12 A;  5BNC A;  1USC A;  1I0S A;  3EC6 A;  2VPA A;  3K88 A;  4HMX A;  3A6R A;  1I0R A;  3FKH A;  1WLK A;  5JAB A;  3ZOF A;  3AWH A;  3KYF A;  1G79 A;  1CI0 A;  3ZOE A;  3FGE A;  3RH7 A;  2D36 A;  2IG6 A;  2FG9 A;  2IAB A;  3E4V A;  3VY5 A;  1WV4 A;  1RZ1 A;  4HX6 A;  4XJ2 A;  2ARZ A;  2L1T A;  1USF A;  2RE7 A;  3ZOC A;  4L82 A;  3TGV A;  2QEA A;  5CHO A;  3V4H A;  2ASF A;  2I02 A;  2Q9K A;  3BPK A;  4Z85 A;  1WLI A;  3A20 A;  3DB0 A;  2FHQ A;  3H96 A;  3R5Z A;  3ZOH A;  3CB0 A;  2NR4 A;  2FUR A;  3A6Q A;  1W3R A;  2P5Z X;  2ECU A;  1RFE A;  1NRG A;  1FLM A;  2HTI A;  3U34 A;  4Y9I A;  1W3O A;  2R0X A;  3CP3 A;  2ECR A;  3BA3 A;  3DNH A;  3GAS A;  1VL7 A;  2D38 A;  3U0I A;  2AQ6 A;  1XHN A;  1W9A A;  2HHZ A;  3ZOD A;  4TV4 A;  3ZOG A;  1Y30 A;  3SWJ A;  2OL5 A;  3PFT A;  2K4Q A;  4W64 A;  4N7R C;  4F07 A;  2IML A;  1JNW A;  1G77 A;  2GJG A;  1XXO A;  2GUJ A;  3HMZ A;  2ED4 A;  3K87 A;  4UHV A;  1W3Q A;  4HMV A;  1DNL A;  4YBN A;  2R6V A;  3R5W A;  2HQ9 A;  4YWN A;  2PTF A;  1G76 A;  4HMS A;  3K86 A;  4HMW A;  3R5L A;  3U35 A;  3EAA A;  1T9M A;  3R5Y A;  3NFW A;  3IN6 A;  2D5M A;  2OU5 A;  4HKH A;  1TY9 A;  4ZKY A;  3BNK A;  2I51 A;  1RZ0 A;  4HMU A; 
#chains in the Genus database with same CATH homology
 3DMB A;  4IRA A;  2X1J A;  3HY8 A;  1WGB A;  5ESC A;  3R5P A;  3VY2 A;  1YLN A;  2A2J A;  3KYG A;  4R82 A;  2QCK A;  3AMF A;  4XHY A;  4QVB A;  3F7E A;  2HTD A;  3VYA A;  4HMT A;  2E83 A;  3U5W A;  1YOA A;  1G78 A;  2D37 A;  2HQ7 A;  1W3P A;  1EJE A;  2X1K A;  3B5M A;  2RDE A;  1AXJ A;  3R5R A;  5CHE C;  5BNC A;  1USC A;  1I0S A;  3EC6 A;  2VPA A;  3K88 A;  4HMX A;  3A6R A;  1I0R A;  3FKH A;  1WLK A;  5JAB A;  3ZOF A;  3AWH A;  3KYF A;  1G79 A;  1CI0 A;  3ZOE A;  3FGE A;  3RH7 A;  2D36 A;  2IG6 A;  2FG9 A;  2IAB A;  3E4V A;  3VY5 A;  1WV4 A;  1RZ1 A;  4HX6 A;  4XJ2 A;  2ARZ A;  1USF A;  2RE7 A;  3ZOC A;  4L82 A;  3TGV A;  2QEA A;  5CHO A;  2ASF A;  2I02 A;  2Q9K A;  3BPK A;  4Z85 A;  1WLI A;  3A20 A;  3DB0 A;  2FHQ A;  3H96 A;  3R5Z A;  3ZOH A;  3CB0 A;  2NR4 A;  2FUR A;  3A6Q A;  1W3R A;  2ECU A;  1RFE A;  1NRG A;  1FLM A;  2HTI A;  3U34 A;  4Y9I A;  1W3O A;  2R0X A;  3CP3 A;  2ECR A;  3BA3 A;  3DNH A;  3GAS A;  1VL7 A;  2D38 A;  3U0I A;  2AQ6 A;  1XHN A;  1W9A A;  2HHZ A;  3ZOD A;  3ZOG A;  1Y30 A;  3SWJ A;  2OL5 A;  3PFT A;  4N7R C;  4F07 A;  2IML A;  1JNW A;  1G77 A;  2GJG A;  1XXO A;  3HMZ A;  2ED4 A;  3K87 A;  1W3Q A;  4HMV A;  1DNL A;  4YBN A;  2R6V A;  3R5W A;  2HQ9 A;  4YWN A;  2PTF A;  1G76 A;  4HMS A;  3K86 A;  4HMW A;  3R5L A;  3U35 A;  1T9M A;  3R5Y A;  3NFW A;  3IN6 A;  2D5M A;  2OU5 A;  1TY9 A;  4ZKY A;  3BNK A;  2I51 A;  1RZ0 A;  4HMU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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