2FKCA

Crystal form i of pre-reactive complex of restriction endonuclease hinp1i with cognate dna and calcium ion
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
247
structure length
247
Chain Sequence
MNLVELGSKTAKDGFKNEKDIADRFENWKENSEAQDWLVTMGHNLDEIKSVKAVVLSGYKSDINVQVLVFYKDALDIHNIQVKLVSNKRGFNQIDKHWLAHYQEMWKFDDNLLRILRHFTGELPPYHSNTKDKRRMFMTEFSQEEQNIVLNWLEKNRVLVLTDILRGRGDFAAEWVLVAQKVSNNARWILRNINEVLQHYGSGDISLSPRGSINFGRVTIQRKGGDNGRETANMLQFKIDPTELFDI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords 5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3'
publication title DNA nicking by HinP1I endonuclease: bending, base flipping and minor groove expansion.
pubmed doi rcsb
source organism Haemophilus influenzae
total genus 78
structure length 247
sequence length 247
chains with identical sequence B
ec nomenclature ec 3.1.21.4: Type II site-specific deoxyribonuclease.
pdb deposition date 2006-01-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11463 R-HINP1I R.HinP1I restriction endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1350.40 Alpha Beta 3-Layer(aba) Sandwich Trna Endonuclease; Chain: A, domain 1 Trna Endonuclease; Chain: A, domain 1 2fkcA01
2FL3A 1YNMA 2FKHB 2FLCA 2FKCA
chains in the Genus database with same CATH superfamily
4DAPA 2CV8A 2VLDA 2WCWA 4QBOA 2OSTA 4DAVA 1XMXA 1UWVA 3AJVB 3IEYB 2FKCA 3IF0X 2GW6A 4LQEA 2ZYZA 2CZRA 2BH2A 2IXSA 2OKFA 3FOVA 2FL3A 1OB9A 1ZP7A 1Y88A 4QBLA 2FCOA 4G6VA 2JJQA 2INBA 4TKDA 2WIWA 2ZYZB 1HH1A 1T0FA 3P1YA 2GJWA 1F1ZA 2WIZA 2WCZA 1R0VA 1GEFA 2WJ0A 1RZNA 1R11A 3P1ZA 4E6ZA 1OB8A 1RLVA 1Y1OA 4TKKA 4G6UA 2FLCA 1IPIA 4QBNA 4EV1A 3AJVA 2VS1A 1YNMA 2Z0RA 5FDKA 1A79A 4ZQUA 2FKHB 3IEYA 3BT7A 2W8MA 3P1ZB 3DNXA 2EO0A 4DA2A 2DBSA
chains in the Genus database with same CATH topology
4DAPA 2CV8A 2VLDA 2WCWA 4QBOA 2OSTA 4DAVA 1XMXA 1UWVA 3AJVB 3IEYB 2FKCA 3IF0X 2GW6A 4LQEA 2ZYZA 2CZRA 2BH2A 2IXSA 2OKFA 3FOVA 2FL3A 1OB9A 1ZP7A 1Y88A 4QBLA 2FCOA 4G6VA 2JJQA 2INBA 4TKDA 2WIWA 2ZYZB 1HH1A 1T0FA 3P1YA 2GJWA 1F1ZA 2WIZA 2WCZA 1R0VA 1GEFA 2WJ0A 1RZNA 1R11A 3P1ZA 4E6ZA 1OB8A 1RLVA 1Y1OA 4TKKA 4G6UA 2FLCA 1IPIA 4QBNA 4EV1A 3AJVA 2VS1A 1YNMA 2Z0RA 5FDKA 1A79A 4ZQUA 2FKHB 3IEYA 3BT7A 2W8MA 3P1ZB 3DNXA 2EO0A 4DA2A 2DBSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FL3 A;  1YNM A;  2FKH B;  2FLC A;  2FKC A; 
#chains in the Genus database with same CATH topology
 4DAP A;  2CV8 A;  2VLD A;  2WCW A;  4QBO A;  2OST A;  4DAV A;  1XMX A;  1UWV A;  3AJV B;  3IEY B;  2FKC A;  3IF0 X;  2GW6 A;  4LQE A;  2ZYZ A;  2CZR A;  2BH2 A;  2IXS A;  2OKF A;  3FOV A;  2FL3 A;  1OB9 A;  1ZP7 A;  1Y88 A;  4QBL A;  2FCO A;  4G6V A;  2JJQ A;  2INB A;  4TKD A;  2WIW A;  2ZYZ B;  1HH1 A;  1T0F A;  3P1Y A;  2GJW A;  1F1Z A;  2WIZ A;  2WCZ A;  1R0V A;  1GEF A;  2WJ0 A;  1RZN A;  1R11 A;  3P1Z A;  4E6Z A;  1OB8 A;  1RLV A;  1Y1O A;  4TKK A;  4G6U A;  2FLC A;  1IPI A;  4QBN A;  4EV1 A;  3AJV A;  2VS1 A;  1YNM A;  2Z0R A;  5FDK A;  1A79 A;  4ZQU A;  2FKH B;  3IEY A;  3BT7 A;  2W8M A;  3P1Z B;  3DNX A;  2EO0 A;  4DA2 A;  2DBS A; 
#chains in the Genus database with same CATH homology
 4DAP A;  2CV8 A;  2VLD A;  2WCW A;  4QBO A;  2OST A;  4DAV A;  1XMX A;  1UWV A;  3AJV B;  3IEY B;  2FKC A;  3IF0 X;  2GW6 A;  4LQE A;  2ZYZ A;  2CZR A;  2BH2 A;  2IXS A;  2OKF A;  3FOV A;  2FL3 A;  1OB9 A;  1ZP7 A;  1Y88 A;  4QBL A;  2FCO A;  4G6V A;  2JJQ A;  2INB A;  4TKD A;  2WIW A;  2ZYZ B;  1HH1 A;  1T0F A;  3P1Y A;  2GJW A;  1F1Z A;  2WIZ A;  2WCZ A;  1R0V A;  1GEF A;  2WJ0 A;  1RZN A;  1R11 A;  3P1Z A;  4E6Z A;  1OB8 A;  1RLV A;  1Y1O A;  4TKK A;  4G6U A;  2FLC A;  1IPI A;  4QBN A;  4EV1 A;  3AJV A;  2VS1 A;  1YNM A;  2Z0R A;  5FDK A;  1A79 A;  4ZQU A;  2FKH B;  3IEY A;  3BT7 A;  2W8M A;  3P1Z B;  3DNX A;  2EO0 A;  4DA2 A;  2DBS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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