2FKFA

Phosphomannomutase/phosphoglucomutase from pseudomonas aeruginosa with alpha-d-glucose 1,6-bisphosphate bound
Total Genus 167
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
sequence length
455
structure length
454
Chain Sequence
LPASIFRAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGHNPPDYNGFKIVVAGETLANEQIQALRERIEKNDLASGVGSVEQVDILPRYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKKMKETGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSAFPSDISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDSSLPVPF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Phosphomannomutase/phosphoglucomutase
publication title The reaction of phosphohexomutase from Pseudomonas aeruginosa: structural insights into a simple processive enzyme.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
molecule tags Isomerase
total genus 167
structure length 454
sequence length 455
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 2006-01-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 2fkfA04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 2fkfA03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 2fkfA01
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 2fkfA02
1PCJX 2EIUA 1LXTA 1P5GX 1C47A 1WJWA 3ENOC 1VKLA 4QG5A 5KL0A 4WX8A 4BJUA 2JPIA 1C4GA 3OLPA 3RSMA 1WQAA 3UW2A 2DKAA 2DKDA 3I3WA 5JMVD 5HSHA 1K35A 2EHPA 3PDKA 2F7LA 1K2YX 1KFQA 4HJHA 1P5DX 5JN5A 5F9CA 3NA5A 2FKFA 2H4LX 5BMNA 5BMPA 4MRQA 3BKQX 1TUOA 2FKMX 3C04A 3PMGA 4WXAA 1PCMX 2FUVA 4IL8A 2Z0FA 2H5AX 1JDYA 2DKCA 3ENCA 1KFIA 5EPCA
chains in the Genus database with same CATH superfamily
2LAEA 4EAIA 2YH5A 3T4NA 3ENOC 1VKLA 2HKPA 3CWUA 4B0AA 1C4GA 2QLVA 2QR1A 1TBPA 1EBMA 3RSMA 2YA3A 2DKAA 2DKDA 1M3HA 2NOEA 2I5WA 2OOYA 1B9KA 3OSMA 4EAGA 2NOLA 3DPUA 1UL7A 2O3OA 5BMNA 1KY6A 4MRQA 1QTPA 2IV9A 3C04A 1QNEA 3PMGA 4WXAA 1YTBA 2FUVA 1LWWA 1DIZA 4IL8A 2QRCA 1MP9A 1QN4A 3CVSA 1T6AA 1JDYA 2DKCA 3IH7A 2G30A 1W80A 1PZDA 1KYUA 1XSZA 3OGDA 4ROCB 2D0AA 1WJWA 2NOFA 2Z8UA 2QREA 3EIKA 5IYBP 3D4VA 2HL8A 2JOIA 3OLPA 3ULXA 2Y8QA 1QTSA 3OSEA 2MZ8A 5JMVD 3H1ZA 3RPJA 3OH9A 1VTOA 2NOIA 1Q9UA 4HJHA 1NGMA 3KRMA 2XHIA 3EAYA 3OC3C 5F9CA 1RM1A 1N3CA 2VJ0A 1JFIC 1UT4A 1TGHA 4DULA 2IV8A 1YQRA 3CWAA 1QNCA 1QN3A 2V9JA 1QN7A 2D0CA 2Y8LA 3DPTA 2JHNA 3TE5A 3F0ZA 2OOXA 2Z0FA 1E42A 4EAKA 2HZSA 3ENCA 4C7PA 1QNBA 1QN9A 3I0WA 1QNAA 1FN7A 1PCJX 1CDWA 1QN8A 1PCZA 1LXTA 1P5GX 1C47A 3N89A 4BJUA 1N3AA 5KL0A 4WX8A 4EALA 1VTLE 2JPIA 1VOLB 1NH2A 3SNSA 3VN5A 3OH6A 1PVSA 3UW2A 4EAJA 1QN5A 3PDKA 4CFFA 5JN5A 3TDHA 4RODB 4D7RA 1HU0A 3HS9A 5BMPA 1LWVA 2D0BA 3D7QA 3BKQX 1VOKA 3I0XA 1PCMX 2PWWA 2NOBA 3HS8A 4WZSD 3F10A 2FGTA 2HZMA 1K35A 1KFIA 5EPCA 3CWTA 4D7QA 3KTUA 2R5XA 2EIUA 1MPGA 2ZFDB 2HL9A 3CWSA 4QG5A 1M5Q1 1YTFA 1YQKA 2QRDA 1WQAA 2MJ7A 2V8QA 3OSTA 4Q11A 1J3MA 3OCIA 5IYDP 3I3WA 4ROEB 5HSHA 5IYCP 1AISA 2NOHA 2EHPA 2F7LA 1K2YX 1KFQA 3ASMA 1P5DX 1EUVA 1KO9A 3CVTA 3CW7A 3NA5A 2FKFA 2EHBD 1D3UA 2NVMA 1TBAB 4I8OA 1NVPA 2H4LX 2JHJA 1N39A 2NLVA 1KY7A 1KYDA 1M3QA 1TUOA 2FKMX 1QN6A 4EJZA 1KYFA 4PY5A 5AN4A 2V92A 1R4XA 4TPSA 1YQMA 1YQLA 1V5SA 2NOZA 2H5AX 1C9BB 4EJYA 1UT7A 2NWVA 1LWYA
chains in the Genus database with same CATH topology
1PCJX 2EIUA 1LXTA 1P5GX 1C47A 1WJWA 3ENOC 1VKLA 4QG5A 5KL0A 4WX8A 4BJUA 2JPIA 1C4GA 3OLPA 3RSMA 1WQAA 3UW2A 2DKAA 2DKDA 3I3WA 5JMVD 5HSHA 1K35A 2EHPA 3PDKA 2F7LA 1K2YX 1KFQA 4HJHA 1P5DX 5JN5A 5F9CA 3NA5A 2FKFA 2H4LX 5BMNA 5BMPA 4MRQA 3BKQX 1TUOA 2FKMX 3C04A 3PMGA 4WXAA 1PCMX 2FUVA 4IL8A 2Z0FA 2H5AX 1JDYA 2DKCA 3ENCA 1KFIA 5EPCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PCJ X;  2EIU A;  1LXT A;  1P5G X;  1C47 A;  1WJW A;  3ENO C;  1VKL A;  4QG5 A;  5KL0 A;  4WX8 A;  4BJU A;  2JPI A;  1C4G A;  3OLP A;  3RSM A;  1WQA A;  3UW2 A;  2DKA A;  2DKD A;  3I3W A;  5JMV D;  5HSH A;  1K35 A;  2EHP A;  3PDK A;  2F7L A;  1K2Y X;  1KFQ A;  4HJH A;  1P5D X;  5JN5 A;  5F9C A;  3NA5 A;  2FKF A;  2H4L X;  5BMN A;  5BMP A;  4MRQ A;  3BKQ X;  1TUO A;  2FKM X;  3C04 A;  3PMG A;  4WXA A;  1PCM X;  2FUV A;  4IL8 A;  2Z0F A;  2H5A X;  1JDY A;  2DKC A;  3ENC A;  1KFI A;  5EPC A; 
#chains in the Genus database with same CATH topology
 2LAE A;  4EAI A;  2YH5 A;  3T4N A;  3ENO C;  1VKL A;  2HKP A;  3CWU A;  4B0A A;  1C4G A;  2QLV A;  2QR1 A;  1TBP A;  1EBM A;  3RSM A;  2YA3 A;  2DKA A;  2DKD A;  1M3H A;  2NOE A;  2I5W A;  2OOY A;  1B9K A;  3OSM A;  4EAG A;  2NOL A;  3DPU A;  1UL7 A;  2O3O A;  5BMN A;  1KY6 A;  4MRQ A;  1QTP A;  2IV9 A;  3C04 A;  1QNE A;  3PMG A;  4WXA A;  1YTB A;  2FUV A;  1LWW A;  1DIZ A;  4IL8 A;  2QRC A;  1MP9 A;  1QN4 A;  3CVS A;  1T6A A;  1JDY A;  2DKC A;  3IH7 A;  2G30 A;  1W80 A;  1PZD A;  1KYU A;  1XSZ A;  3OGD A;  4ROC B;  2D0A A;  1WJW A;  2NOF A;  2Z8U A;  2QRE A;  3EIK A;  5IYB P;  3D4V A;  2HL8 A;  2JOI A;  3OLP A;  3ULX A;  2Y8Q A;  1QTS A;  3OSE A;  2MZ8 A;  5JMV D;  3H1Z A;  3RPJ A;  3OH9 A;  1VTO A;  2NOI A;  1Q9U A;  4HJH A;  1NGM A;  3KRM A;  2XHI A;  3EAY A;  3OC3 C;  5F9C A;  1RM1 A;  1N3C A;  2VJ0 A;  1JFI C;  1UT4 A;  1TGH A;  4DUL A;  2IV8 A;  1YQR A;  3CWA A;  1QNC A;  1QN3 A;  2V9J A;  1QN7 A;  2D0C A;  2Y8L A;  3DPT A;  2JHN A;  3TE5 A;  3F0Z A;  2OOX A;  2Z0F A;  1E42 A;  4EAK A;  2HZS A;  3ENC A;  4C7P A;  1QNB A;  1QN9 A;  3I0W A;  1QNA A;  1FN7 A;  1PCJ X;  1CDW A;  1QN8 A;  1PCZ A;  1LXT A;  1P5G X;  1C47 A;  3N89 A;  4BJU A;  1N3A A;  5KL0 A;  4WX8 A;  4EAL A;  1VTL E;  2JPI A;  1VOL B;  1NH2 A;  3SNS A;  3VN5 A;  3OH6 A;  1PVS A;  3UW2 A;  4EAJ A;  1QN5 A;  3PDK A;  4CFF A;  5JN5 A;  3TDH A;  4ROD B;  4D7R A;  1HU0 A;  3HS9 A;  5BMP A;  1LWV A;  2D0B A;  3D7Q A;  3BKQ X;  1VOK A;  3I0X A;  1PCM X;  2PWW A;  2NOB A;  3HS8 A;  4WZS D;  3F10 A;  2FGT A;  2HZM A;  1K35 A;  1KFI A;  5EPC A;  3CWT A;  4D7Q A;  3KTU A;  2R5X A;  2EIU A;  1MPG A;  2ZFD B;  2HL9 A;  3CWS A;  4QG5 A;  1M5Q 1;  1YTF A;  1YQK A;  2QRD A;  1WQA A;  2MJ7 A;  2V8Q A;  3OST A;  4Q11 A;  1J3M A;  3OCI A;  5IYD P;  3I3W A;  4ROE B;  5HSH A;  5IYC P;  1AIS A;  2NOH A;  2EHP A;  2F7L A;  1K2Y X;  1KFQ A;  3ASM A;  1P5D X;  1EUV A;  1KO9 A;  3CVT A;  3CW7 A;  3NA5 A;  2FKF A;  2EHB D;  1D3U A;  2NVM A;  1TBA B;  4I8O A;  1NVP A;  2H4L X;  2JHJ A;  1N39 A;  2NLV A;  1KY7 A;  1KYD A;  1M3Q A;  1TUO A;  2FKM X;  1QN6 A;  4EJZ A;  1KYF A;  4PY5 A;  5AN4 A;  2V92 A;  1R4X A;  4TPS A;  1YQM A;  1YQL A;  1V5S A;  2NOZ A;  2H5A X;  1C9B B;  4EJY A;  1UT7 A;  2NWV A;  1LWY A; 
#chains in the Genus database with same CATH homology
 1PCJ X;  2EIU A;  1LXT A;  1P5G X;  1C47 A;  1WJW A;  3ENO C;  1VKL A;  4QG5 A;  5KL0 A;  4WX8 A;  4BJU A;  2JPI A;  1C4G A;  3OLP A;  3RSM A;  1WQA A;  3UW2 A;  2DKA A;  2DKD A;  3I3W A;  5JMV D;  5HSH A;  1K35 A;  2EHP A;  3PDK A;  2F7L A;  1K2Y X;  1KFQ A;  4HJH A;  1P5D X;  5JN5 A;  5F9C A;  3NA5 A;  2FKF A;  2H4L X;  5BMN A;  5BMP A;  4MRQ A;  3BKQ X;  1TUO A;  2FKM X;  3C04 A;  3PMG A;  4WXA A;  1PCM X;  2FUV A;  4IL8 A;  2Z0F A;  2H5A X;  1JDY A;  2DKC A;  3ENC A;  1KFI A;  5EPC A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...