2FKHB

Crystal form ii of pre-reactive complex of restriction endonuclease hinp1i with cognate dna and calcium ions
Total Genus 73
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
247
structure length
247
Chain Sequence
MNLVELGSKTAKDGFKNEKDIADRFENWKENSEAQDWLVTMGHNLDEIKSVKAVVLSGYKSDINVQVLVFYKDALDIHNIQVKLVSNKRGFNQIDKHWLAHYQEMWKFDDNLLRILRHFTGELPPYHSNTKDKRRMFMTEFSQEEQNIVLNWLEKNRVLVLTDILRGRGDFAAEWVLVAQKVSNNARWILRNINEVLQHYGSGDISLSPRGSINFGRVTIQRKGGDNGRETANMLQFKIDPTELFDI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords 5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3'
publication title DNA nicking by HinP1I endonuclease: bending, base flipping and minor groove expansion.
pubmed doi rcsb
source organism Haemophilus influenzae
total genus 73
structure length 247
sequence length 247
ec nomenclature ec 3.1.21.4: Type II site-specific deoxyribonuclease.
pdb deposition date 2006-01-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF11463 R-HINP1I R.HinP1I restriction endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1350.40 Alpha Beta 3-Layer(aba) Sandwich Trna Endonuclease; Chain: A, domain 1 Trna Endonuclease; Chain: A, domain 1 2fkhB01
2FKHB 2FL3A 2FLCA 2FKCA 1YNMA
chains in the Genus database with same CATH superfamily
2OSTA 3DNXA 4QBLA 2ZYZA 1T0FA 2WCZA 2ZYZB 2INBA 2WCWA 1ZP7A 4QBNA 2Z0RA 4G6VA 2WJ0A 4DA2A 4TKDA 2FKHB 2CV8A 3BT7A 2DBSA 2WIZA 2FKCA 1HH1A 1IPIA 4QBOA 4G6UA 1UWVA 1OB8A 3AJVB 3AJVA 2WIWA 2FCOA 1RZNA 2JJQA 4E6ZA 1Y1OA 4ZQUA 2GJWA 3IF0X 1A79A 3P1ZA 4DAVA 1R0VA 2IXSA 3P1ZB 2VLDA 4EV1A 3IEYA 1R11A 2EO0A 3IEYB 4LQEA 3P1YA 2FL3A 1OB9A 4DAPA 1RLVA 4TKKA 1GEFA 2GW6A 2VS1A 2W8MA 5FDKA 2FLCA 3FOVA 2CZRA 1Y88A 2OKFA 1XMXA 2BH2A 1YNMA 1F1ZA
chains in the Genus database with same CATH topology
2OSTA 3DNXA 4QBLA 2ZYZA 1T0FA 2WCZA 2ZYZB 2INBA 2WCWA 1ZP7A 4QBNA 2Z0RA 4G6VA 2WJ0A 4DA2A 4TKDA 2FKHB 2CV8A 3BT7A 2DBSA 2WIZA 2FKCA 1HH1A 1IPIA 4QBOA 4G6UA 1UWVA 1OB8A 3AJVB 3AJVA 2WIWA 2FCOA 1RZNA 2JJQA 4E6ZA 1Y1OA 4ZQUA 2GJWA 3IF0X 1A79A 3P1ZA 4DAVA 1R0VA 2IXSA 3P1ZB 2VLDA 4EV1A 3IEYA 1R11A 2EO0A 3IEYB 4LQEA 3P1YA 2FL3A 1OB9A 4DAPA 1RLVA 4TKKA 1GEFA 2GW6A 2VS1A 2W8MA 5FDKA 2FLCA 3FOVA 2CZRA 1Y88A 2OKFA 1XMXA 2BH2A 1YNMA 1F1ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FKH B;  2FL3 A;  2FLC A;  2FKC A;  1YNM A; 
#chains in the Genus database with same CATH topology
 2OST A;  3DNX A;  4QBL A;  2ZYZ A;  1T0F A;  2WCZ A;  2ZYZ B;  2INB A;  2WCW A;  1ZP7 A;  4QBN A;  2Z0R A;  4G6V A;  2WJ0 A;  4DA2 A;  4TKD A;  2FKH B;  2CV8 A;  3BT7 A;  2DBS A;  2WIZ A;  2FKC A;  1HH1 A;  1IPI A;  4QBO A;  4G6U A;  1UWV A;  1OB8 A;  3AJV B;  3AJV A;  2WIW A;  2FCO A;  1RZN A;  2JJQ A;  4E6Z A;  1Y1O A;  4ZQU A;  2GJW A;  3IF0 X;  1A79 A;  3P1Z A;  4DAV A;  1R0V A;  2IXS A;  3P1Z B;  2VLD A;  4EV1 A;  3IEY A;  1R11 A;  2EO0 A;  3IEY B;  4LQE A;  3P1Y A;  2FL3 A;  1OB9 A;  4DAP A;  1RLV A;  4TKK A;  1GEF A;  2GW6 A;  2VS1 A;  2W8M A;  5FDK A;  2FLC A;  3FOV A;  2CZR A;  1Y88 A;  2OKF A;  1XMX A;  2BH2 A;  1YNM A;  1F1Z A; 
#chains in the Genus database with same CATH homology
 2OST A;  3DNX A;  4QBL A;  2ZYZ A;  1T0F A;  2WCZ A;  2ZYZ B;  2INB A;  2WCW A;  1ZP7 A;  4QBN A;  2Z0R A;  4G6V A;  2WJ0 A;  4DA2 A;  4TKD A;  2FKH B;  2CV8 A;  3BT7 A;  2DBS A;  2WIZ A;  2FKC A;  1HH1 A;  1IPI A;  4QBO A;  4G6U A;  1UWV A;  1OB8 A;  3AJV B;  3AJV A;  2WIW A;  2FCO A;  1RZN A;  2JJQ A;  4E6Z A;  1Y1O A;  4ZQU A;  2GJW A;  3IF0 X;  1A79 A;  3P1Z A;  4DAV A;  1R0V A;  2IXS A;  3P1Z B;  2VLD A;  4EV1 A;  3IEY A;  1R11 A;  2EO0 A;  3IEY B;  4LQE A;  3P1Y A;  2FL3 A;  1OB9 A;  4DAP A;  1RLV A;  4TKK A;  1GEF A;  2GW6 A;  2VS1 A;  2W8M A;  5FDK A;  2FLC A;  3FOV A;  2CZR A;  1Y88 A;  2OKF A;  1XMX A;  2BH2 A;  1YNM A;  1F1Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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