2FLCA

Post-reactive complex of restriction endonuclease hinp1i with nicked cognate dna and magnesium ions
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
247
structure length
247
Chain Sequence
MNLVELGSKTAKDGFKNEKDIADRFENWKENSEAQDWLVTMGHNLDEIKSVKAVVLSGYKSDINVQVLVFYKDALDIHNIQVKLVSNKRGFNQIDKHWLAHYQEMWKFDDNLLRILRHFTGELPPYHSNTKDKRRMFMTEFSQEEQNIVLNWLEKNRVLVLTDILRGRGDFAAEWVLVAQKVSNNARWILRNINEVLQHYGSGDISLSPRGSINFGRVTIQRKGGDNGRETANMLQFKIDPTELFDI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords 5'-D(*CP*CP*AP*G)-3'
publication title DNA nicking by HinP1I endonuclease: bending, base flipping and minor groove expansion.
pubmed doi rcsb
source organism Haemophilus influenzae
total genus 76
structure length 247
sequence length 247
ec nomenclature ec 3.1.21.4: Type II site-specific deoxyribonuclease.
pdb deposition date 2006-01-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11463 R-HINP1I R.HinP1I restriction endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1350.40 Alpha Beta 3-Layer(aba) Sandwich Trna Endonuclease; Chain: A, domain 1 Trna Endonuclease; Chain: A, domain 1 2flcA01
1YNMA 2FLCA 2FKHB 2FKCA 2FL3A
chains in the Genus database with same CATH superfamily
1RZNA 1XMXA 2ZYZB 3P1YA 1F1ZA 1UWVA 4DA2A 2ZYZA 3IF0X 4E6ZA 4EV1A 2WIWA 4QBLA 2FKHB 4G6VA 2VLDA 2VS1A 2EO0A 2DBSA 1GEFA 2WJ0A 2GJWA 1YNMA 1HH1A 1RLVA 2INBA 1R0VA 2OSTA 2CZRA 2WCZA 2W8MA 2WIZA 2WCWA 1A79A 2FKCA 1Y1OA 3AJVB 3DNXA 2FL3A 3AJVA 2BH2A 1IPIA 4TKKA 1Y88A 1R11A 3IEYB 3P1ZB 1T0FA 2OKFA 2IXSA 2Z0RA 3FOVA 3IEYA 3P1ZA 1OB9A 4QBOA 1OB8A 2GW6A 4DAPA 4DAVA 4TKDA 5FDKA 2JJQA 4QBNA 2CV8A 4ZQUA 2FLCA 4G6UA 4LQEA 3BT7A 1ZP7A 2FCOA
chains in the Genus database with same CATH topology
1RZNA 1XMXA 2ZYZB 3P1YA 1F1ZA 1UWVA 4DA2A 2ZYZA 3IF0X 4E6ZA 4EV1A 2WIWA 4QBLA 2FKHB 4G6VA 2VLDA 2VS1A 2EO0A 2DBSA 1GEFA 2WJ0A 2GJWA 1YNMA 1HH1A 1RLVA 2INBA 1R0VA 2OSTA 2CZRA 2WCZA 2W8MA 2WIZA 2WCWA 1A79A 2FKCA 1Y1OA 3AJVB 3DNXA 2FL3A 3AJVA 2BH2A 1IPIA 4TKKA 1Y88A 1R11A 3IEYB 3P1ZB 1T0FA 2OKFA 2IXSA 2Z0RA 3FOVA 3IEYA 3P1ZA 1OB9A 4QBOA 1OB8A 2GW6A 4DAPA 4DAVA 4TKDA 5FDKA 2JJQA 4QBNA 2CV8A 4ZQUA 2FLCA 4G6UA 4LQEA 3BT7A 1ZP7A 2FCOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YNM A;  2FLC A;  2FKH B;  2FKC A;  2FL3 A; 
#chains in the Genus database with same CATH topology
 1RZN A;  1XMX A;  2ZYZ B;  3P1Y A;  1F1Z A;  1UWV A;  4DA2 A;  2ZYZ A;  3IF0 X;  4E6Z A;  4EV1 A;  2WIW A;  4QBL A;  2FKH B;  4G6V A;  2VLD A;  2VS1 A;  2EO0 A;  2DBS A;  1GEF A;  2WJ0 A;  2GJW A;  1YNM A;  1HH1 A;  1RLV A;  2INB A;  1R0V A;  2OST A;  2CZR A;  2WCZ A;  2W8M A;  2WIZ A;  2WCW A;  1A79 A;  2FKC A;  1Y1O A;  3AJV B;  3DNX A;  2FL3 A;  3AJV A;  2BH2 A;  1IPI A;  4TKK A;  1Y88 A;  1R11 A;  3IEY B;  3P1Z B;  1T0F A;  2OKF A;  2IXS A;  2Z0R A;  3FOV A;  3IEY A;  3P1Z A;  1OB9 A;  4QBO A;  1OB8 A;  2GW6 A;  4DAP A;  4DAV A;  4TKD A;  5FDK A;  2JJQ A;  4QBN A;  2CV8 A;  4ZQU A;  2FLC A;  4G6U A;  4LQE A;  3BT7 A;  1ZP7 A;  2FCO A; 
#chains in the Genus database with same CATH homology
 1RZN A;  1XMX A;  2ZYZ B;  3P1Y A;  1F1Z A;  1UWV A;  4DA2 A;  2ZYZ A;  3IF0 X;  4E6Z A;  4EV1 A;  2WIW A;  4QBL A;  2FKH B;  4G6V A;  2VLD A;  2VS1 A;  2EO0 A;  2DBS A;  1GEF A;  2WJ0 A;  2GJW A;  1YNM A;  1HH1 A;  1RLV A;  2INB A;  1R0V A;  2OST A;  2CZR A;  2WCZ A;  2W8M A;  2WIZ A;  2WCW A;  1A79 A;  2FKC A;  1Y1O A;  3AJV B;  3DNX A;  2FL3 A;  3AJV A;  2BH2 A;  1IPI A;  4TKK A;  1Y88 A;  1R11 A;  3IEY B;  3P1Z B;  1T0F A;  2OKF A;  2IXS A;  2Z0R A;  3FOV A;  3IEY A;  3P1Z A;  1OB9 A;  4QBO A;  1OB8 A;  2GW6 A;  4DAP A;  4DAV A;  4TKD A;  5FDK A;  2JJQ A;  4QBN A;  2CV8 A;  4ZQU A;  2FLC A;  4G6U A;  4LQE A;  3BT7 A;  1ZP7 A;  2FCO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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