2FMME

Crystal structure of emsy-hp1 complex
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
118
structure length
118
Chain Sequence
GPLDLSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGPNSSSEWSIEGRRLVPLMPRLVPQTAFTVTANAVANAAI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords Protein EMSY
publication title Crystal structure of the HP1-EMSY complex reveals an unusual mode of HP1 binding.
pubmed doi rcsb
source organism Homo sapiens
total genus 39
structure length 118
sequence length 118
ec nomenclature
pdb deposition date 2006-01-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF03735 ENT ENT domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1240.40 Mainly Alpha Orthogonal Bundle Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 2fmmE00
1UZ3A 1UTUA 2FMME
chains in the Genus database with same CATH superfamily
1UZ3A 1K7YA 4X8QA 2J6YA 1R5QA 1SLYA 3BULA 1K98A 1QSAA 4G86A 4M0MA 3M1MA 1Q6BA 4HH3C 5C8DA 2PBIA 1BMTA 1Q6AA 2FMME 1R8JA 3H20A 5C5EA 1SUYA 3IVAA 2I2XB 4JGIA 3BJDA 3IV9A 3WHPA 4HEHA 2J6ZA 1QTEA 2J70A 3L9TA 1UTUA 1SV1A 1V2ZA 3EZXA 1W53A
chains in the Genus database with same CATH topology
1UZ3A 4M0MA 3M1MA 4X8QA 2PBIA 3L9TA 1UTUA 2FMME 3H20A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UZ3 A;  1UTU A;  2FMM E; 
#chains in the Genus database with same CATH topology
 1UZ3 A;  1K7Y A;  4X8Q A;  2J6Y A;  1R5Q A;  1SLY A;  3BUL A;  1K98 A;  1QSA A;  4G86 A;  4M0M A;  3M1M A;  1Q6B A;  4HH3 C;  5C8D A;  2PBI A;  1BMT A;  1Q6A A;  2FMM E;  1R8J A;  3H20 A;  5C5E A;  1SUY A;  3IVA A;  2I2X B;  4JGI A;  3BJD A;  3IV9 A;  3WHP A;  4HEH A;  2J6Z A;  1QTE A;  2J70 A;  3L9T A;  1UTU A;  1SV1 A;  1V2Z A;  3EZX A;  1W53 A; 
#chains in the Genus database with same CATH homology
 1UZ3 A;  4M0M A;  3M1M A;  4X8Q A;  2PBI A;  3L9T A;  1UTU A;  2FMM E;  3H20 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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