2FN2A

Solution nmr structure of the glycosylated second type two module of fibronectin, 20 structures
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
59
structure length
59
Chain Sequence
VLVQTRGGNSNGALCHFPFLYNNHNYTDCTSEGRRDNMKWCGTTQNYDADQKFGFCPMA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Glycoprotein
molecule keywords FIBRONECTIN
publication title Solution structure of the glycosylated second type 2 module of fibronectin.
pubmed doi rcsb
source organism Homo sapiens
total genus 6
structure length 59
sequence length 59
ec nomenclature
pdb deposition date 1997-08-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00040 fn2 Fibronectin type II domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.10.10 Mainly Beta Ribbon Seminal Fluid Protein PDC-109 (Domain B) Fibronectin, type II, collagen-binding 2fn2A00
1QO6A 1CK7A 1J7MA 1EAKA 1PDCA 2V5OA 1E88A 2FN2A 3M7PA 1KS0A 1H8PA 1L6JA 1CXWA 1GXDA 3MQLA 1E8BA
chains in the Genus database with same CATH superfamily
4MB3A 2Y2GA 2Y2JA 1YU4A 1GOIA 4MB4A 2IOUA 2D49A 1YU1A 2BG1A 4IBIA 1PDCA 1H8PA 4GH9A 3WD1A 4LG2A 4OJOA 1W1TA 4GHAA 3MQLA 1E8BA 2FN2A 3M7PA 2UWXA 1J7MA 3FKEA 1KS0A 3WX7A 1E6NA 4HMEA 4NZ5A 2Y2OA 1E88A 4Z2JA 1YUEA 2JE5A 1E6PA 1ED7A 4IBDA 1E6ZA 1OGGA 4HMCA 4NYUA 3L25A 1UR9A 2JCHA 1UR8A 3L26A 1OGBA 1H0IA 1CK7A 4MB5A 2V5OA 4IBJA 3KS8A 4QNLA 3WD0A 4IBBA 2Y2PA 3WD2A 4HMDA 4OJ6A 2XD1A 1W1YA 4NYYA 4IJFA 4OJLA 1EAKA 4TX8A 4NZ1A 1L6JA 1CXWA 3WD3A 3HONA 3L29A 4Z2IA 4IBCA 2Y2MA 4NZ3A 4NZ4A 4NY2A 3L2AA 4Z2LA 3L28A 4IBFA 4OJPA 1W1PA 4Z2KA 1QO6A 3N3FA 4Z2HA 4OUIA 2Y2NA 2FFFB 4IBKA 4IBGA 3WD4A 1GPFA 3HSHA 1YU0A 2Y2QA 1AIWA 4Z2GA 1GXDA 2Y2KA 2RTSA 2Y2HA 1YU3A 4IBEA 1E6RA 4GHLA 5BPVA 2Y2IA 1E15A 1O6IA 3KS4A 4OJ5A 2XD5A 1H0GA 1YU2A 4IJEA 2Y2LA 1W1VA 3L27A
chains in the Genus database with same CATH topology
1QO6A 1CK7A 1J7MA 1EAKA 1PDCA 2V5OA 1E88A 2FN2A 3M7PA 1KS0A 1H8PA 1L6JA 1CXWA 1GXDA 3MQLA 1E8BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QO6 A;  1CK7 A;  1J7M A;  1EAK A;  1PDC A;  2V5O A;  1E88 A;  2FN2 A;  3M7P A;  1KS0 A;  1H8P A;  1L6J A;  1CXW A;  1GXD A;  3MQL A;  1E8B A; 
#chains in the Genus database with same CATH topology
 4MB3 A;  2Y2G A;  2Y2J A;  1YU4 A;  1GOI A;  4MB4 A;  2IOU A;  2D49 A;  1YU1 A;  2BG1 A;  4IBI A;  1PDC A;  1H8P A;  4GH9 A;  3WD1 A;  4LG2 A;  4OJO A;  1W1T A;  4GHA A;  3MQL A;  1E8B A;  2FN2 A;  3M7P A;  2UWX A;  1J7M A;  3FKE A;  1KS0 A;  3WX7 A;  1E6N A;  4HME A;  4NZ5 A;  2Y2O A;  1E88 A;  4Z2J A;  1YUE A;  2JE5 A;  1E6P A;  1ED7 A;  4IBD A;  1E6Z A;  1OGG A;  4HMC A;  4NYU A;  3L25 A;  1UR9 A;  2JCH A;  1UR8 A;  3L26 A;  1OGB A;  1H0I A;  1CK7 A;  4MB5 A;  2V5O A;  4IBJ A;  3KS8 A;  4QNL A;  3WD0 A;  4IBB A;  2Y2P A;  3WD2 A;  4HMD A;  4OJ6 A;  2XD1 A;  1W1Y A;  4NYY A;  4IJF A;  4OJL A;  1EAK A;  4TX8 A;  4NZ1 A;  1L6J A;  1CXW A;  3WD3 A;  3HON A;  3L29 A;  4Z2I A;  4IBC A;  2Y2M A;  4NZ3 A;  4NZ4 A;  4NY2 A;  3L2A A;  4Z2L A;  3L28 A;  4IBF A;  4OJP A;  1W1P A;  4Z2K A;  1QO6 A;  3N3F A;  4Z2H A;  4OUI A;  2Y2N A;  2FFF B;  4IBK A;  4IBG A;  3WD4 A;  1GPF A;  3HSH A;  1YU0 A;  2Y2Q A;  1AIW A;  4Z2G A;  1GXD A;  2Y2K A;  2RTS A;  2Y2H A;  1YU3 A;  4IBE A;  1E6R A;  4GHL A;  5BPV A;  2Y2I A;  1E15 A;  1O6I A;  3KS4 A;  4OJ5 A;  2XD5 A;  1H0G A;  1YU2 A;  4IJE A;  2Y2L A;  1W1V A;  3L27 A; 
#chains in the Genus database with same CATH homology
 1QO6 A;  1CK7 A;  1J7M A;  1EAK A;  1PDC A;  2V5O A;  1E88 A;  2FN2 A;  3M7P A;  1KS0 A;  1H8P A;  1L6J A;  1CXW A;  1GXD A;  3MQL A;  1E8B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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