2FONA

X-ray crystal structure of leacx1, an acyl-coa oxidase from lycopersicon esculentum (tomato)
Total Genus 259
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
259
sequence length
654
structure length
654
Chain Sequence
GVDYLADERKKAGFDVDEMKIVWAGSRHDFELTDRISKLVASDPGFSKEGRTMLPRKELFKNTLRKAAYAWKRIIELRLSQEEATMLRRYVDEPAFTDLHWGMFIPAIKGQGTDKQQEKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGKDYGVNGFIVQLRSLEDHKPLPGVTVGDIGMKFGNGAYNSMDNGVLSFDHVRIPRDQMLMRVSQVTKEGKYVQSDIPRQLLYGTMVYVRQSIVADASLAMSRAVCIATRYSAVRRQFGSQNGGQETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLAANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNVVLQLQVARFLMKTISQLGTGKKPVGTVSYMGRIEHLMQCRSDVKQAEDWLKPSAVLEAFEARSARMSVACAKNLSKFENQEEGFAELAADLVEAAVAHCQLIVVSKYIEKLQQNIPGKGVKQQLEVLCGIYSLFILHKHQGDFLGTGYITSKQGSLANDQLRALYSQLRPNAVSLVDAFNYTDHYLGSILGRYDGNVYPKLYEAAWKDPLNKSDIADGFHEYIRPLLK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords peroxisomal acyl-CoA oxidase 1A
publication title Structure determination and analysis of acyl-CoA oxidase (ACX1) from tomato.
pubmed doi rcsb
source organism Solanum lycopersicum
molecule tags Oxidoreductase
total genus 259
structure length 654
sequence length 654
chains with identical sequence B, C
ec nomenclature ec 1.3.3.6: Acyl-CoA oxidase.
pdb deposition date 2006-01-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01756 ACOX Acyl-CoA oxidase
A PF02770 Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
A PF14749 Acyl-CoA_ox_N Acyl-coenzyme A oxidase N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.540.10 Mainly Alpha Orthogonal Bundle Butyryl-Coa Dehydrogenase, subunit A; domain 1 Acyl-CoA dehydrogenase/oxidase, N-terminal domain 2fonA01
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2fonA03
1.20.140.10 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A, domain 3 2fonA04
2.40.110.10 Mainly Beta Beta Barrel Butyryl-CoA Dehydrogenase, subunit A; domain 2 Butyryl-CoA Dehydrogenase, subunit A, domain 2 2fonA02
2YYGA 3MKHA 4IRNA 5K3JA 1JQIA 4Q4UA 3OWAA 4M9AA 2C0UA 2R0MA 4ZXVA 1BUCA 2A1TA 3B96A 3UBRA 1RX0A 2JBSA 3MXLA 3MDDA 4Q0TA 3GM6A 4L3ZA 4Q5BA 1U8VA 3FCJA 2UXWA 3GNCA 3II9A 2C12A 3SF6A 3FO3A 1FS9A 2D29A 4L3XA 3TTBA 1IVHA 2E81A 2YYIA 3HWCA 3TORA 3D6BA 2WBIA 4G5EA 1UKWA 4KCFA 2VR0A 3BNFA 4O5MA 1UDYA 3D1IA 2YYKA 3MPIA 2JIFA 2OR0A 3BNHA 1EGDA 3EOMA 4IV6A 2CX9A 5K3GA 3SWOA 1FS8A 2YYLA 3AFEA 3LGQA 2JBRA 4Q5CA 3MDEA 1SIQA 3RKHA 3BNGA 1T9GA 2R0NA 4JEKA 2EBAA 1R2JA 1EGEA 3S7WA 2IX6A 1SIRA 2RFQA 3OWMA 3SCEA 3LG1A 3OIBA 4ZYJA 4OO2A 2OT4A 3L1TA 4L1FA 2Z1QA 2E80A 1QDBA 3D9DA 2J7AA 1IS2A 1W07A 2FONA 4X28A 3SXQA 4Q17A 2IX5A 2DDHA 3F29A 1GU6A 2RDZA 3R7KA 3GQTA 3D9FA 3MMOA 3X0YA 2YYMA 2ZAFA 4W9UA 3BNJA 3EONA 1EGCA 2JBTA 4U83A 3D9GA 5K3HA 4NXLA 2RF7A 2PG0A 2ZO5A 4KTOA 1OAHA 3AFFA 3D9EA 3PFDA 4XVXA 5K3IA 4HR3A 4P13A 3X0XA 4L3YA 2DVLA 1FS7A 2YYJA 4DOYA 4Q1OA 4L38A 3UU9A 1WS9A 3NF4A 4RM7A 2VIGA 3P4TA 4WJYA 3M9VA 2REHA 3MPJA 4N5FA 4X28C
chains in the Genus database with same CATH superfamily
4H85A 3DJLA 2YYGA 2CJ8A 3MKHA 4IRNA 5B5VA 1S26A 5K3JA 1PI1A 2AO2A 2CJ5A 4KS9A 4AKHA 1JQIA 4Q4UA 3OWAA 3TZ0A 4H81A 2BU6A 4M9AA 2C0UA 2PO4A 1XG2B 3Q0AA 2R05A 2R0MA 4ZXVA 2CJ6A 1BUCA 2FP1A 2A1TA 2ZDYA 1XFVA 3B96A 4FZ4A 4J1VA 4QICA 1RX0A 3UBRA 2AZEA 2EBHX 2JBSA 3MXLA 4HKRA 4KSFA 4JIZA 4FF2A 1SK6A 1K90A 3MDDA 4Q0TA 3CE2A 3X29A 2XS1A 2CJ4A 1X8ZA 1XFWA 1Y8OA 3GM6A 4L3ZA 2ZKJA 4Q5BA 1U8VA 3FCJA 2UXWA 3GNCA 3II9A 2C12A 3SF6A 1RP3A 3FO3A 4FF3A 1FS9A 2D29A 5M4NA 5J6AA 4L3XA 2XQRB 3CRKA 1XFZA 1IVHA 3TTBA 2BU8A 2E81A 2YYIA 3N0RA 2GBBA 1X90A 2CJ7A 3HWCA 3TORA 3D6BA 5M4PA 2OEVA 5B5WA 2WBIA 4G5EA 4H7QA 2HJNA 4DZYA 1UKWA 4KCFA 1X91A 2VR0A 3BNFA 3D2RA 4O5MA 3TZ4A 1UDYA 3D1IA 2YYKA 3MPIA 5BRKA 2PNRA 2JIFA 2OR0A 2F6LA 2BU7A 3BNHA 3TZ2A 3C3LA 1EGDA 3EOMA 4IV6A 2CX9A 2ZDXA 2FP2A 5K3GA 2Q8GA 2EBFX 3SWOA 1FS8A 2YYLA 3AFEA 3LGQA 2JBRA 4Q5CA 3MDEA 2BTZA 3VADA 3KMLA 1SIQA 2EC5A 3RKHA 5M4KA 3BNGA 2Q8HA 4E01A 4AI6A 2YGWA 1T9GA 2R0NA 4JEKA 2EBAA 2OEXA 1R2JA 4HKSA 1EGEA 4MP7A 3S7WA 2OJQA 2IX6A 1SIRA 2RFQA 1K93A 2QR4A 3OWMA 4V26A 3SCEA 4E00A 3LG1A 1XFXA 2LFWA 4MP2A 3OIBA 4ZYJA 4OO2A 2OT4A 3L1TA 3CRLA 1Y0VA 1GJVA 1XFYA 4LQQB 4L1FA 2Z1QA 1SC5A 2E80A 2VF1A 4G97A 4F0XA 1QDBA 4FF1A 3VKGA 3D9DA 2J7AA 1IS2A 5GJVE 1W07A 4AKGA 1R3BA 2XS8A 2FONA 4X28A 2BU5A 3SXQA 4Q17A 5M4MA 4MPEA 2IX5A 1GKXA 3Q23A 2DDHA 3F29A 1GU6A 2RDZA 3R7KA 5BRMA 2Q8IA 2R03A 3C46A 4KSAA 3GQTA 3D9FA 1PK0A 3U33A 3MMOA 3X0YA 2YYMA 2ZAFA 4W9UA 3BNJA 1LVCA 3EONA 1EGCA 1GKZA 2JBTA 4U83A 4P79A 4FF4A 3D9GA 5K3HA 4NXLA 1RJ1A 2RF7A 2PG0A 2ZO5A 3Q22A 1XFUA 4KTOA 1OAHA 3AFFA 3D9EA 3PFDA 4XVXA 1RJ4A 2BU2A 2R02A 5K3IA 1Y8NA 5J71A 1Y8PA 4V25A 4HR3A 4P13A 4E02A 3X0XA 4L3YA 3C2PA 2DVLA 1FS7A 2YYJA 3TZ5A 1JM6A 4DOYA 4Q1OA 4L38A 5B6BA 3VKHA 3UU9A 4AKIA 2Q8FA 1WS9A 3NF4A 4RM7A 2VIGA 3P4TA 4WJYA 3M9VA 3Q24A 2REHA 3MPJA 4N5FA 1K8TA 4LQSB 5GJWE 4MPNA 4MPCA 5EZ3A 4JIOA 4X28C 2E0AA
chains in the Genus database with same CATH topology
2YYGA 3MKHA 4IRNA 5K3JA 1JQIA 4Q4UA 3OWAA 4M9AA 2C0UA 2R0MA 4ZXVA 1BUCA 2A1TA 3B96A 3UBRA 1RX0A 2JBSA 3MXLA 3MDDA 4Q0TA 3GM6A 4L3ZA 4Q5BA 1U8VA 3FCJA 2UXWA 3GNCA 3II9A 2C12A 3SF6A 3FO3A 1FS9A 2D29A 4L3XA 3TTBA 1IVHA 2E81A 2YYIA 3HWCA 3TORA 3D6BA 2WBIA 4G5EA 1UKWA 4KCFA 2VR0A 3BNFA 4O5MA 1UDYA 3D1IA 2YYKA 3MPIA 2JIFA 2OR0A 3BNHA 1EGDA 3EOMA 4IV6A 2CX9A 5K3GA 3SWOA 1FS8A 2YYLA 3AFEA 3LGQA 2JBRA 4Q5CA 3MDEA 1SIQA 3RKHA 3BNGA 1T9GA 2R0NA 4JEKA 2EBAA 1R2JA 1EGEA 3S7WA 2IX6A 1SIRA 2RFQA 3OWMA 3SCEA 3LG1A 3OIBA 4ZYJA 4OO2A 2OT4A 3L1TA 4L1FA 2Z1QA 2E80A 1QDBA 3D9DA 2J7AA 1IS2A 1W07A 2FONA 4X28A 3SXQA 4Q17A 2IX5A 2DDHA 3F29A 1GU6A 2RDZA 3R7KA 3GQTA 3D9FA 3MMOA 3X0YA 2YYMA 2ZAFA 4W9UA 3BNJA 3EONA 1EGCA 2JBTA 4U83A 3D9GA 5K3HA 4NXLA 2RF7A 2PG0A 2ZO5A 4KTOA 1OAHA 3AFFA 3D9EA 3PFDA 4XVXA 5K3IA 4HR3A 4P13A 3X0XA 4L3YA 2DVLA 1FS7A 2YYJA 4DOYA 4Q1OA 4L38A 3UU9A 1WS9A 3NF4A 4RM7A 2VIGA 3P4TA 4WJYA 3M9VA 2REHA 3MPJA 4N5FA 4X28C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YYG A;  3MKH A;  4IRN A;  5K3J A;  1JQI A;  4Q4U A;  3OWA A;  4M9A A;  2C0U A;  2R0M A;  4ZXV A;  1BUC A;  2A1T A;  3B96 A;  3UBR A;  1RX0 A;  2JBS A;  3MXL A;  3MDD A;  4Q0T A;  3GM6 A;  4L3Z A;  4Q5B A;  1U8V A;  3FCJ A;  2UXW A;  3GNC A;  3II9 A;  2C12 A;  3SF6 A;  3FO3 A;  1FS9 A;  2D29 A;  4L3X A;  3TTB A;  1IVH A;  2E81 A;  2YYI A;  3HWC A;  3TOR A;  3D6B A;  2WBI A;  4G5E A;  1UKW A;  4KCF A;  2VR0 A;  3BNF A;  4O5M A;  1UDY A;  3D1I A;  2YYK A;  3MPI A;  2JIF A;  2OR0 A;  3BNH A;  1EGD A;  3EOM A;  4IV6 A;  2CX9 A;  5K3G A;  3SWO A;  1FS8 A;  2YYL A;  3AFE A;  3LGQ A;  2JBR A;  4Q5C A;  3MDE A;  1SIQ A;  3RKH A;  3BNG A;  1T9G A;  2R0N A;  4JEK A;  2EBA A;  1R2J A;  1EGE A;  3S7W A;  2IX6 A;  1SIR A;  2RFQ A;  3OWM A;  3SCE A;  3LG1 A;  3OIB A;  4ZYJ A;  4OO2 A;  2OT4 A;  3L1T A;  4L1F A;  2Z1Q A;  2E80 A;  1QDB A;  3D9D A;  2J7A A;  1IS2 A;  1W07 A;  2FON A;  4X28 A;  3SXQ A;  4Q17 A;  2IX5 A;  2DDH A;  3F29 A;  1GU6 A;  2RDZ A;  3R7K A;  3GQT A;  3D9F A;  3MMO A;  3X0Y A;  2YYM A;  2ZAF A;  4W9U A;  3BNJ A;  3EON A;  1EGC A;  2JBT A;  4U83 A;  3D9G A;  5K3H A;  4NXL A;  2RF7 A;  2PG0 A;  2ZO5 A;  4KTO A;  1OAH A;  3AFF A;  3D9E A;  3PFD A;  4XVX A;  5K3I A;  4HR3 A;  4P13 A;  3X0X A;  4L3Y A;  2DVL A;  1FS7 A;  2YYJ A;  4DOY A;  4Q1O A;  4L38 A;  3UU9 A;  1WS9 A;  3NF4 A;  4RM7 A;  2VIG A;  3P4T A;  4WJY A;  3M9V A;  2REH A;  3MPJ A;  4N5F A;  4X28 C; 
#chains in the Genus database with same CATH topology
 4H85 A;  3DJL A;  2YYG A;  2CJ8 A;  3MKH A;  4IRN A;  5B5V A;  1S26 A;  5K3J A;  1PI1 A;  2AO2 A;  2CJ5 A;  4KS9 A;  4AKH A;  1JQI A;  4Q4U A;  3OWA A;  3TZ0 A;  4H81 A;  2BU6 A;  4M9A A;  2C0U A;  2PO4 A;  1XG2 B;  3Q0A A;  2R05 A;  2R0M A;  4ZXV A;  2CJ6 A;  1BUC A;  2FP1 A;  2A1T A;  2ZDY A;  1XFV A;  3B96 A;  4FZ4 A;  4J1V A;  4QIC A;  1RX0 A;  3UBR A;  2AZE A;  2EBH X;  2JBS A;  3MXL A;  4HKR A;  4KSF A;  4JIZ A;  4FF2 A;  1SK6 A;  1K90 A;  3MDD A;  4Q0T A;  3CE2 A;  3X29 A;  2XS1 A;  2CJ4 A;  1X8Z A;  1XFW A;  1Y8O A;  3GM6 A;  4L3Z A;  2ZKJ A;  4Q5B A;  1U8V A;  3FCJ A;  2UXW A;  3GNC A;  3II9 A;  2C12 A;  3SF6 A;  1RP3 A;  3FO3 A;  4FF3 A;  1FS9 A;  2D29 A;  5M4N A;  5J6A A;  4L3X A;  2XQR B;  3CRK A;  1XFZ A;  1IVH A;  3TTB A;  2BU8 A;  2E81 A;  2YYI A;  3N0R A;  2GBB A;  1X90 A;  2CJ7 A;  3HWC A;  3TOR A;  3D6B A;  5M4P A;  2OEV A;  5B5W A;  2WBI A;  4G5E A;  4H7Q A;  2HJN A;  4DZY A;  1UKW A;  4KCF A;  1X91 A;  2VR0 A;  3BNF A;  3D2R A;  4O5M A;  3TZ4 A;  1UDY A;  3D1I A;  2YYK A;  3MPI A;  5BRK A;  2PNR A;  2JIF A;  2OR0 A;  2F6L A;  2BU7 A;  3BNH A;  3TZ2 A;  3C3L A;  1EGD A;  3EOM A;  4IV6 A;  2CX9 A;  2ZDX A;  2FP2 A;  5K3G A;  2Q8G A;  2EBF X;  3SWO A;  1FS8 A;  2YYL A;  3AFE A;  3LGQ A;  2JBR A;  4Q5C A;  3MDE A;  2BTZ A;  3VAD A;  3KML A;  1SIQ A;  2EC5 A;  3RKH A;  5M4K A;  3BNG A;  2Q8H A;  4E01 A;  4AI6 A;  2YGW A;  1T9G A;  2R0N A;  4JEK A;  2EBA A;  2OEX A;  1R2J A;  4HKS A;  1EGE A;  4MP7 A;  3S7W A;  2OJQ A;  2IX6 A;  1SIR A;  2RFQ A;  1K93 A;  2QR4 A;  3OWM A;  4V26 A;  3SCE A;  4E00 A;  3LG1 A;  1XFX A;  2LFW A;  4MP2 A;  3OIB A;  4ZYJ A;  4OO2 A;  2OT4 A;  3L1T A;  3CRL A;  1Y0V A;  1GJV A;  1XFY A;  4LQQ B;  4L1F A;  2Z1Q A;  1SC5 A;  2E80 A;  2VF1 A;  4G97 A;  4F0X A;  1QDB A;  4FF1 A;  3VKG A;  3D9D A;  2J7A A;  1IS2 A;  5GJV E;  1W07 A;  4AKG A;  1R3B A;  2XS8 A;  2FON A;  4X28 A;  2BU5 A;  3SXQ A;  4Q17 A;  5M4M A;  4MPE A;  2IX5 A;  1GKX A;  3Q23 A;  2DDH A;  3F29 A;  1GU6 A;  2RDZ A;  3R7K A;  5BRM A;  2Q8I A;  2R03 A;  3C46 A;  4KSA A;  3GQT A;  3D9F A;  1PK0 A;  3U33 A;  3MMO A;  3X0Y A;  2YYM A;  2ZAF A;  4W9U A;  3BNJ A;  1LVC A;  3EON A;  1EGC A;  1GKZ A;  2JBT A;  4U83 A;  4P79 A;  4FF4 A;  3D9G A;  5K3H A;  4NXL A;  1RJ1 A;  2RF7 A;  2PG0 A;  2ZO5 A;  3Q22 A;  1XFU A;  4KTO A;  1OAH A;  3AFF A;  3D9E A;  3PFD A;  4XVX A;  1RJ4 A;  2BU2 A;  2R02 A;  5K3I A;  1Y8N A;  5J71 A;  1Y8P A;  4V25 A;  4HR3 A;  4P13 A;  4E02 A;  3X0X A;  4L3Y A;  3C2P A;  2DVL A;  1FS7 A;  2YYJ A;  3TZ5 A;  1JM6 A;  4DOY A;  4Q1O A;  4L38 A;  5B6B A;  3VKH A;  3UU9 A;  4AKI A;  2Q8F A;  1WS9 A;  3NF4 A;  4RM7 A;  2VIG A;  3P4T A;  4WJY A;  3M9V A;  3Q24 A;  2REH A;  3MPJ A;  4N5F A;  1K8T A;  4LQS B;  5GJW E;  4MPN A;  4MPC A;  5EZ3 A;  4JIO A;  4X28 C;  2E0A A; 
#chains in the Genus database with same CATH homology
 2YYG A;  3MKH A;  4IRN A;  5K3J A;  1JQI A;  4Q4U A;  3OWA A;  4M9A A;  2C0U A;  2R0M A;  4ZXV A;  1BUC A;  2A1T A;  3B96 A;  3UBR A;  1RX0 A;  2JBS A;  3MXL A;  3MDD A;  4Q0T A;  3GM6 A;  4L3Z A;  4Q5B A;  1U8V A;  3FCJ A;  2UXW A;  3GNC A;  3II9 A;  2C12 A;  3SF6 A;  3FO3 A;  1FS9 A;  2D29 A;  4L3X A;  3TTB A;  1IVH A;  2E81 A;  2YYI A;  3HWC A;  3TOR A;  3D6B A;  2WBI A;  4G5E A;  1UKW A;  4KCF A;  2VR0 A;  3BNF A;  4O5M A;  1UDY A;  3D1I A;  2YYK A;  3MPI A;  2JIF A;  2OR0 A;  3BNH A;  1EGD A;  3EOM A;  4IV6 A;  2CX9 A;  5K3G A;  3SWO A;  1FS8 A;  2YYL A;  3AFE A;  3LGQ A;  2JBR A;  4Q5C A;  3MDE A;  1SIQ A;  3RKH A;  3BNG A;  1T9G A;  2R0N A;  4JEK A;  2EBA A;  1R2J A;  1EGE A;  3S7W A;  2IX6 A;  1SIR A;  2RFQ A;  3OWM A;  3SCE A;  3LG1 A;  3OIB A;  4ZYJ A;  4OO2 A;  2OT4 A;  3L1T A;  4L1F A;  2Z1Q A;  2E80 A;  1QDB A;  3D9D A;  2J7A A;  1IS2 A;  1W07 A;  2FON A;  4X28 A;  3SXQ A;  4Q17 A;  2IX5 A;  2DDH A;  3F29 A;  1GU6 A;  2RDZ A;  3R7K A;  3GQT A;  3D9F A;  3MMO A;  3X0Y A;  2YYM A;  2ZAF A;  4W9U A;  3BNJ A;  3EON A;  1EGC A;  2JBT A;  4U83 A;  3D9G A;  5K3H A;  4NXL A;  2RF7 A;  2PG0 A;  2ZO5 A;  4KTO A;  1OAH A;  3AFF A;  3D9E A;  3PFD A;  4XVX A;  5K3I A;  4HR3 A;  4P13 A;  3X0X A;  4L3Y A;  2DVL A;  1FS7 A;  2YYJ A;  4DOY A;  4Q1O A;  4L38 A;  3UU9 A;  1WS9 A;  3NF4 A;  4RM7 A;  2VIG A;  3P4T A;  4WJY A;  3M9V A;  2REH A;  3MPJ A;  4N5F A;  4X28 C; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...