2FOOA

The crystal structure of the n-terminal domain of hausp/usp7 complexed with p53 peptide 359-362
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
143
structure length
137
Chain Sequence
TSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVAW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Ubiquitin carboxyl-terminal hydrolase 7
publication title Molecular recognition of p53 and MDM2 by USP7/HAUSP
pubmed doi rcsb
source organism Homo sapiens
total genus 24
structure length 137
sequence length 143
ec nomenclature ec 3.4.19.12: Ubiquitinyl hydrolase 1.
pdb deposition date 2006-01-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00917 MATH MATH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.210.10 Mainly Beta Sandwich Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 2fooA00
1YY6A 4YSIA 3HQLA 4KG9A 3IVVA 4O1VA 4JJQA 1D01A 1K2FA 3HQIA 4M4EA 1CZZA 4I7CA 2AN6A 4GJHA 3IVQA 1D00A 5E1TA 1RF3A 2F1ZA 2GKWA 1D0JA 1QSCA 1YZEA 5H9MA 2F1XA 3HU6A 4GWMA 4I7BA 2FOJA 4Z8MA 2A25A 4GHUA 1FLLA 2F1WA 1CA4A 3HQHA 3MQSC 1F3VB 2FOOA 4X3GA 1LB5A 1CZYA 3HSVA 1L0AA 2FOPA 4I7DA 1D0AA 2F1YA 1KZZA 1LB6A 1ZMSA 1LB4A 1CA9A 2XXNA 1FLKA 4C9ZA 3ZJBA 3IVBA 4K8UA 3HQMA 4CA1A 2CR2A 3MQRA 4GWNA
chains in the Genus database with same CATH superfamily
1YY6A 4YSIA 3HQLA 4KG9A 3IVVA 4O1VA 4JJQA 1D01A 1K2FA 3HQIA 4M4EA 1CZZA 4I7CA 2AN6A 4GJHA 3IVQA 1D00A 5E1TA 1RF3A 2F1ZA 2GKWA 1D0JA 1QSCA 1YZEA 5H9MA 2F1XA 3HU6A 4GWMA 4I7BA 2FOJA 4Z8MA 2A25A 4GHUA 1FLLA 2F1WA 1CA4A 3HQHA 3MQSC 1F3VB 2FOOA 4X3GA 1LB5A 1CZYA 3HSVA 1L0AA 2FOPA 4I7DA 1D0AA 2F1YA 1KZZA 1LB6A 1ZMSA 1LB4A 1CA9A 2XXNA 1FLKA 4C9ZA 3ZJBA 3IVBA 4K8UA 3HQMA 4CA1A 2CR2A 3MQRA 4GWNA
chains in the Genus database with same CATH topology
1YY6A 4YSIA 3HQLA 4KG9A 3IVVA 4O1VA 4JJQA 1D01A 1K2FA 3HQIA 4M4EA 1CZZA 4I7CA 2AN6A 4GJHA 3IVQA 1D00A 5E1TA 1RF3A 2F1ZA 2GKWA 1D0JA 1QSCA 1YZEA 5H9MA 2F1XA 3HU6A 4GWMA 4I7BA 2FOJA 4Z8MA 2A25A 4GHUA 1FLLA 2F1WA 1CA4A 3HQHA 3MQSC 1F3VB 2FOOA 4X3GA 1LB5A 1CZYA 3HSVA 1L0AA 2FOPA 4I7DA 1D0AA 2F1YA 1KZZA 1LB6A 1ZMSA 1LB4A 1CA9A 2XXNA 1FLKA 4C9ZA 3ZJBA 3IVBA 4K8UA 3HQMA 4CA1A 2CR2A 3MQRA 4GWNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YY6 A;  4YSI A;  3HQL A;  4KG9 A;  3IVV A;  4O1V A;  4JJQ A;  1D01 A;  1K2F A;  3HQI A;  4M4E A;  1CZZ A;  4I7C A;  2AN6 A;  4GJH A;  3IVQ A;  1D00 A;  5E1T A;  1RF3 A;  2F1Z A;  2GKW A;  1D0J A;  1QSC A;  1YZE A;  5H9M A;  2F1X A;  3HU6 A;  4GWM A;  4I7B A;  2FOJ A;  4Z8M A;  2A25 A;  4GHU A;  1FLL A;  2F1W A;  1CA4 A;  3HQH A;  3MQS C;  1F3V B;  2FOO A;  4X3G A;  1LB5 A;  1CZY A;  3HSV A;  1L0A A;  2FOP A;  4I7D A;  1D0A A;  2F1Y A;  1KZZ A;  1LB6 A;  1ZMS A;  1LB4 A;  1CA9 A;  2XXN A;  1FLK A;  4C9Z A;  3ZJB A;  3IVB A;  4K8U A;  3HQM A;  4CA1 A;  2CR2 A;  3MQR A;  4GWN A; 
#chains in the Genus database with same CATH topology
 1YY6 A;  4YSI A;  3HQL A;  4KG9 A;  3IVV A;  4O1V A;  4JJQ A;  1D01 A;  1K2F A;  3HQI A;  4M4E A;  1CZZ A;  4I7C A;  2AN6 A;  4GJH A;  3IVQ A;  1D00 A;  5E1T A;  1RF3 A;  2F1Z A;  2GKW A;  1D0J A;  1QSC A;  1YZE A;  5H9M A;  2F1X A;  3HU6 A;  4GWM A;  4I7B A;  2FOJ A;  4Z8M A;  2A25 A;  4GHU A;  1FLL A;  2F1W A;  1CA4 A;  3HQH A;  3MQS C;  1F3V B;  2FOO A;  4X3G A;  1LB5 A;  1CZY A;  3HSV A;  1L0A A;  2FOP A;  4I7D A;  1D0A A;  2F1Y A;  1KZZ A;  1LB6 A;  1ZMS A;  1LB4 A;  1CA9 A;  2XXN A;  1FLK A;  4C9Z A;  3ZJB A;  3IVB A;  4K8U A;  3HQM A;  4CA1 A;  2CR2 A;  3MQR A;  4GWN A; 
#chains in the Genus database with same CATH homology
 1YY6 A;  4YSI A;  3HQL A;  4KG9 A;  3IVV A;  4O1V A;  4JJQ A;  1D01 A;  1K2F A;  3HQI A;  4M4E A;  1CZZ A;  4I7C A;  2AN6 A;  4GJH A;  3IVQ A;  1D00 A;  5E1T A;  1RF3 A;  2F1Z A;  2GKW A;  1D0J A;  1QSC A;  1YZE A;  5H9M A;  2F1X A;  3HU6 A;  4GWM A;  4I7B A;  2FOJ A;  4Z8M A;  2A25 A;  4GHU A;  1FLL A;  2F1W A;  1CA4 A;  3HQH A;  3MQS C;  1F3V B;  2FOO A;  4X3G A;  1LB5 A;  1CZY A;  3HSV A;  1L0A A;  2FOP A;  4I7D A;  1D0A A;  2F1Y A;  1KZZ A;  1LB6 A;  1ZMS A;  1LB4 A;  1CA9 A;  2XXN A;  1FLK A;  4C9Z A;  3ZJB A;  3IVB A;  4K8U A;  3HQM A;  4CA1 A;  2CR2 A;  3MQR A;  4GWN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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