2FOPA

The crystal structure of the n-terminal domain of hausp/usp7 complexed with mdm2 peptide 147-150
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
143
structure length
137
Chain Sequence
TSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVAW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Ubiquitin carboxyl-terminal hydrolase 7
publication title Molecular recognition of p53 and MDM2 by USP7/HAUSP
pubmed doi rcsb
source organism Homo sapiens
total genus 23
structure length 137
sequence length 143
ec nomenclature ec 3.4.19.12: Ubiquitinyl hydrolase 1.
pdb deposition date 2006-01-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00917 MATH MATH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.210.10 Mainly Beta Sandwich Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 2fopA00
4GWNA 4CA1A 1D00A 4I7CA 2XXNA 4YSIA 4JJQA 1CZYA 1YZEA 2AN6A 1D01A 3MQRA 2GKWA 3ZJBA 2FOPA 4I7BA 1QSCA 1D0JA 4M4EA 1K2FA 4C9ZA 1CA9A 2A25A 3HQLA 3HU6A 4O1VA 3IVQA 4GWMA 1RF3A 3HQIA 3IVBA 4KG9A 1CA4A 4GJHA 2FOJA 1FLLA 1D0AA 3HQHA 3IVVA 1YY6A 4GHUA 2FOOA 3HQMA 1LB5A 4Z8MA 1CZZA 2F1ZA 5H9MA 1L0AA 2F1WA 2F1XA 1FLKA 4K8UA 3MQSC 4I7DA 1ZMSA 3HSVA 1KZZA 4X3GA 2CR2A 2F1YA 1F3VB 5E1TA 1LB4A 1LB6A
chains in the Genus database with same CATH superfamily
4GWNA 4CA1A 1D00A 4I7CA 2XXNA 4YSIA 4JJQA 1CZYA 1YZEA 2AN6A 1D01A 3MQRA 2GKWA 3ZJBA 2FOPA 4I7BA 1QSCA 1D0JA 4M4EA 1K2FA 4C9ZA 1CA9A 2A25A 3HQLA 3HU6A 4O1VA 3IVQA 4GWMA 1RF3A 3HQIA 3IVBA 4KG9A 1CA4A 4GJHA 2FOJA 1FLLA 1D0AA 3HQHA 3IVVA 1YY6A 4GHUA 2FOOA 3HQMA 1LB5A 4Z8MA 1CZZA 2F1ZA 5H9MA 1L0AA 2F1WA 2F1XA 1FLKA 4K8UA 3MQSC 4I7DA 1ZMSA 3HSVA 1KZZA 4X3GA 2CR2A 2F1YA 1F3VB 5E1TA 1LB4A 1LB6A
chains in the Genus database with same CATH topology
4GWNA 4CA1A 1D00A 4I7CA 2XXNA 4YSIA 4JJQA 1CZYA 1YZEA 2AN6A 1D01A 3MQRA 2GKWA 3ZJBA 2FOPA 4I7BA 1QSCA 1D0JA 4M4EA 1K2FA 4C9ZA 1CA9A 2A25A 3HQLA 3HU6A 4O1VA 3IVQA 4GWMA 1RF3A 3HQIA 3IVBA 4KG9A 1CA4A 4GJHA 2FOJA 1FLLA 1D0AA 3HQHA 3IVVA 1YY6A 4GHUA 2FOOA 3HQMA 1LB5A 4Z8MA 1CZZA 2F1ZA 5H9MA 1L0AA 2F1WA 2F1XA 1FLKA 4K8UA 3MQSC 4I7DA 1ZMSA 3HSVA 1KZZA 4X3GA 2CR2A 2F1YA 1F3VB 5E1TA 1LB4A 1LB6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GWN A;  4CA1 A;  1D00 A;  4I7C A;  2XXN A;  4YSI A;  4JJQ A;  1CZY A;  1YZE A;  2AN6 A;  1D01 A;  3MQR A;  2GKW A;  3ZJB A;  2FOP A;  4I7B A;  1QSC A;  1D0J A;  4M4E A;  1K2F A;  4C9Z A;  1CA9 A;  2A25 A;  3HQL A;  3HU6 A;  4O1V A;  3IVQ A;  4GWM A;  1RF3 A;  3HQI A;  3IVB A;  4KG9 A;  1CA4 A;  4GJH A;  2FOJ A;  1FLL A;  1D0A A;  3HQH A;  3IVV A;  1YY6 A;  4GHU A;  2FOO A;  3HQM A;  1LB5 A;  4Z8M A;  1CZZ A;  2F1Z A;  5H9M A;  1L0A A;  2F1W A;  2F1X A;  1FLK A;  4K8U A;  3MQS C;  4I7D A;  1ZMS A;  3HSV A;  1KZZ A;  4X3G A;  2CR2 A;  2F1Y A;  1F3V B;  5E1T A;  1LB4 A;  1LB6 A; 
#chains in the Genus database with same CATH topology
 4GWN A;  4CA1 A;  1D00 A;  4I7C A;  2XXN A;  4YSI A;  4JJQ A;  1CZY A;  1YZE A;  2AN6 A;  1D01 A;  3MQR A;  2GKW A;  3ZJB A;  2FOP A;  4I7B A;  1QSC A;  1D0J A;  4M4E A;  1K2F A;  4C9Z A;  1CA9 A;  2A25 A;  3HQL A;  3HU6 A;  4O1V A;  3IVQ A;  4GWM A;  1RF3 A;  3HQI A;  3IVB A;  4KG9 A;  1CA4 A;  4GJH A;  2FOJ A;  1FLL A;  1D0A A;  3HQH A;  3IVV A;  1YY6 A;  4GHU A;  2FOO A;  3HQM A;  1LB5 A;  4Z8M A;  1CZZ A;  2F1Z A;  5H9M A;  1L0A A;  2F1W A;  2F1X A;  1FLK A;  4K8U A;  3MQS C;  4I7D A;  1ZMS A;  3HSV A;  1KZZ A;  4X3G A;  2CR2 A;  2F1Y A;  1F3V B;  5E1T A;  1LB4 A;  1LB6 A; 
#chains in the Genus database with same CATH homology
 4GWN A;  4CA1 A;  1D00 A;  4I7C A;  2XXN A;  4YSI A;  4JJQ A;  1CZY A;  1YZE A;  2AN6 A;  1D01 A;  3MQR A;  2GKW A;  3ZJB A;  2FOP A;  4I7B A;  1QSC A;  1D0J A;  4M4E A;  1K2F A;  4C9Z A;  1CA9 A;  2A25 A;  3HQL A;  3HU6 A;  4O1V A;  3IVQ A;  4GWM A;  1RF3 A;  3HQI A;  3IVB A;  4KG9 A;  1CA4 A;  4GJH A;  2FOJ A;  1FLL A;  1D0A A;  3HQH A;  3IVV A;  1YY6 A;  4GHU A;  2FOO A;  3HQM A;  1LB5 A;  4Z8M A;  1CZZ A;  2F1Z A;  5H9M A;  1L0A A;  2F1W A;  2F1X A;  1FLK A;  4K8U A;  3MQS C;  4I7D A;  1ZMS A;  3HSV A;  1KZZ A;  4X3G A;  2CR2 A;  2F1Y A;  1F3V B;  5E1T A;  1LB4 A;  1LB6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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