2FQTA

Crystal structure of b.subtilis luxs in complex with (2s)-2-amino-4-[(2r,3s)-2,3-dihydroxy-3-n-hydroxycarbamoyl-propylmercapto]butyric acid
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
154
structure length
154
Chain Sequence
VESFELDHNAVVAPYVRHCGVHKVGTDGVVNKFDIRFCQPNKQAMKPDTIHTLEHLLAFTIRSHAEKYDHFDIIDISPMGCQTGYYLVVSGEPTSAEIVDLLEDTMKEAVEITEIPAANEKQCGQAKLHDLEGAKRLMRFWLSQDKEELLKVFG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
source organism Bacillus subtilis
publication title Design and Synthesis of Substrate Analogue Inhibitors of S-Ribosylhomocysteinase (LuxS)
pubmed doi rcsb
molecule keywords S-ribosylhomocysteine lyase
total genus 44
structure length 154
sequence length 154
ec nomenclature ec 4.4.1.21: S-ribosylhomocysteine lyase.
pdb deposition date 2006-01-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02664 LuxS S-Ribosylhomocysteinase (LuxS)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.80 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 S-ribosylhomocysteinase (LuxS) 2fqtA00
2FQTA 1INNA 1J6VA 1JOEA 1J98A 1YCLA 5E68A 1VJEA 1JVIA 1J6WA 1J6XA 1IE0A 1VH2A 4XCHA 2FQOA 1VGXA 1JQWA
chains in the Genus database with same CATH superfamily
1O26A 5IOSA 1Y1VK 5HL8A 3HOWK 4A3LC 3PO3C 5IORA 1I50C 3RZDC 3H0GA 1O2AA 1I3QA 3CQZC 4WILA 3T00A 2E2IC 5IYBK 3GTPK 2YU9K 3ERED 1ZBSA 3BUEA 4A3JC 3GTQA 5D4DA 1VH2A 2JA5A 4PABA 4XLPA 2NVYK 4LQYA 5TMCA 1F7UA 4BBRC 3FOEA 4A3BK 4BXXC 3FKIK 4BY1C 4ILDA 4KMHA 4BBSK 1VJEA 3HOYC 1F93A 1I3QC 3H0GC 2B63K 1ZQ1C 5M5YK 1WCMA 1USOA 4GTCA 2NVTK 2R92A 3GTQC 3A8KA 2E2HK 2VUMK 3M4OK 3S1QC 4OINA 4A3IK 1ZYRA 1EH1A 2GSUA 4YG2A 4P5BA 2NVQK 2A6EA 5M3MK 1WCMC 3AD9C 2O5JA 4C2MC 4OIOA 2ZUEA 2R92C 3S16C 4A93C 3OREA 4C3HC 2NVYA 3LPXA 5JVOA 3SZZA 1IL2A 1TWCA 5IYDC 4G7ZA 1O28A 1IW7A 2GAGC 3H3VD 3DXJA 3PO3K 4G0WA 1WOOA 1YCLA 5CHPA 1G51A 4QIWL 3CQZK 4KDDA 2JA8K 2O5IA 1J98A 2NVXK 2E2HA 5IOQA 4LK1A 1R9TA 4GTFA 5M5WK 2NVYC 1J6VA 1TWFA 1XXBA 1SMYA 1TWCC 1WORA 4BXXK 2CW0A 4FM9A 4BY1K 1DCPA 3HOYK 1HI9A 1I3QK 4BLBA 4A3DC 1VGXA 1C0AA 4Y7NK 4KB2A 5CJ9A 3FHZA 3HOVC 4GTDA 4GTAA 2WAQD 2E2HC 3GTQK 3N0BA 3AD7C 2WB1D 4FZBA 1Y1WA 1R9TC 1TWFC 2GSOA 2E2JK 4KMAA 3HOUC 3OEPA 1JVIA 3GTMA 4ZH4A 3FOFA 3K7AK 4Q5SA 4C2MK 2NVXA 4A93K 2XCOA 1Y1WC 1PJ5A 3GTKK 3TFHA 4AH6A 1XZQB 4C3HK 4DDQA 3S1MC 3TTGA 3GTOA 5IYDK 3I4MC 3S1NC 4G0UA 4AYBL 2FQOA 3S2HC 2R7ZA 1IBAA 3GTMC 1XZQA 4QJVB 3G4CA 2JA8C 3S15C 1I6HC 4P5AA 4OIRA 4XSZA 4KC6A 3L4KA 2NVXC 4KMDA 4QJVA 1BDFA 1USMA 1TWCK 3M3YK 1TWHA 3GTOC 3GSIA 1INNA 3QX3A 2P5MA 2PMZL 5FLMC 2R7ZC 1WOSA 3CAGA 4WJ4A 3AQPA 4C3IC 4C3JC 4Y7NC 2A69A 4BY7C 1F9NA 4A3DK 1VLOA 1O29A 1L0WA 1PJ6A 3HOVK 2V6TA 1SFOA 3GTKA 1WQGA 1R9TK 3BP8C 2E2JC 1TWFK 5C4XC 1JQWA 1WOPA 1TWHC 5L46A 4OIQA 3GEIA 2V6SA 3HOUK 1ZVUA 4KM9A 2PPBA 4XCHA 4A3CK 4J3NA 1TWGA 3TFJA 2CFAB 3K7AC 4M1XA 1O2BA 4KATA 5EGEA 1EK8A 3L4JA 1SFOC 4NOIA 2PA8L 4A3GC 3GTKC 1Y1WK 2CFAA 4GZYA 2XCQA 1XZPB 1XXAA 3S1MK 1YNJA 3RZOC 2D6FC 3I4MK 3S1NK 4G7OA 3T01A 2JA6K 3S2HK 3S14C 1EQRA 3GTMK 1TWGC 1XZPA 3S15K 1I6HK 2FQTA 1X31C 3I4NK 4RMFA 2Y0SL 3AQOA 1UV7A 4BLAA 3GEEA 3JSTA 4KMUA 4KN7A 1DCHA 3M3YC 3A8JA 3G4AA 3GTOK 4KARA 3GTLA 1EFWA 3NUHA 5FJ8K 2W7VA 3N3YA 5FLMK 2R7ZK 3S17C 4C3JK 4C3IK 4BY7K 4LLGA 3HOZC 3LAPA 5IP7C 3GDZA 1EI6A 1YX2A 4MQ9A 3GIRA 3ADAC 1WIHA 5E68A 5C4XK 1TWHK 3GTLC 2JA6A 4A3CC 3HOXK 4XLNA 1BS2A 1O25A 5C4JC 3SZYA 3OPFA 4A3MK 3VA7A 3EQLA 2GAHC 1SFOK 4A3GK 3TFIA 1O2FB 4A3EC 2RH6A 1VRQC 3RZOK 1O24A 2JA6C 2XCRB 2GSNA 1B4BA 3S14K 3S1RC 2BE5A 1TWGK 3I4NC 1RU0A 3Q3QA 4O2DA 5M5XK 5C44C 1KQ4A 3AH5A 4A3KK 5M3FK 3GTJA 5IP9C 3HKZD 2ZFZA 4JK1A 4P9SA 3S17K 4AYBD 2EBBA 2A68A 3LAJA 3PO2K 4WJ3M 4BKWA 4KASA 5IYCC 4A3FK 3HOZK 4LOWA 5IP7K 4MEXA 4LK0A 3WODA 1XPPA 3GTGK 1DCOA 2R93A 3BP3A 3GTJC 2P8TA 4X6AK 1IQ0A 3GTLK 3V4GA 3MMLB 1K83A 4YFXA 3HOXC 1AB4A 2PMZD 1DD5A 4GTLA 2A6HA 1HQMA 4A3MC 2RGRA 5C4JK 2JA7A 1J6XA 1XXCA 3IPJA 2JA5C 2R93C 3H3VL 1Y1VA 4G7HA 3AD8C 4OIPA 1IS1A 1TWAK 3S2DK 4A3EK 1K83C 4KAWX 5TJ3A 3S1RK 3GTPA 2YU9A 4Y52C 1J6WA 4Q4ZA 2JA7C 4GFQA 5C44K 1I6VA 1F7VA 3GTGA 5C3EC 4YFNA 4A3KC 2PA8D 1Y1VC 4MEYA 5TMFA 3FKIA 3HOWC 1PJ7A 3GEHA 5IP9K 4A3LK 2B63A 4PAAA 1I50K 3RZDK 3S0XA 5IYBC 3PO2C 2E2IK 2YU9C 3GTPC 2WAQL 1O27A 4QIWD 5JFEA 2V6UA 1ISEA 2WB1L 4A3FC 5IYCK 2VUMA 4A3JK 2KWAA 1IE0A 2Y0SD 3GTGC 2Y3PA 4A3BC 1B4AA 3FKIC 4BBRK 5IOTA 4X6AC 3GTJK 1TWAA 4LR2A 4BBSC 2B63C 1GE9A 1BJTA 4GTBA 3H0GK 1WQFA 3A8IA 2PHCB 1YNNA 2NVTC 5EGHA 4GTEA 4C45A 2ZUFA 1BGWA 1WSVA 2VUMC 3M4OC 1V5VA 4KB4A 4G0VA 2JA5K 4KM8A 3N0CA 4A3IC 3S1QK 2R93K 1TWAC 3S2DC 1ZXOA 4KN4A 1K83K 3T02A 1I50A 2NVQC 3CQZA 1WSRA 2E2IA 1JOEA 1WCMK 2JH3A 4Y52K 3S16K 4GT9A 2R92K 2JA7K 4XSXA 4YFKA 3HXAA 5C3EK 4LJZA 3HKZL 1WQHA
chains in the Genus database with same CATH topology
2FQTA 1INNA 1J6VA 1JOEA 1J98A 1YCLA 5E68A 1VJEA 1JVIA 1J6WA 1J6XA 1IE0A 1VH2A 4XCHA 2FQOA 1VGXA 1JQWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FQT A;  1INN A;  1J6V A;  1JOE A;  1J98 A;  1YCL A;  5E68 A;  1VJE A;  1JVI A;  1J6W A;  1J6X A;  1IE0 A;  1VH2 A;  4XCH A;  2FQO A;  1VGX A;  1JQW A; 
#chains in the Genus database with same CATH topology
 1O26 A;  5IOS A;  1Y1V K;  5HL8 A;  3HOW K;  4A3L C;  3PO3 C;  5IOR A;  1I50 C;  3RZD C;  3H0G A;  1O2A A;  1I3Q A;  3CQZ C;  4WIL A;  3T00 A;  2E2I C;  5IYB K;  3GTP K;  2YU9 K;  3ERE D;  1ZBS A;  3BUE A;  4A3J C;  3GTQ A;  5D4D A;  1VH2 A;  2JA5 A;  4PAB A;  4XLP A;  2NVY K;  4LQY A;  5TMC A;  1F7U A;  4BBR C;  3FOE A;  4A3B K;  4BXX C;  3FKI K;  4BY1 C;  4ILD A;  4KMH A;  4BBS K;  1VJE A;  3HOY C;  1F93 A;  1I3Q C;  3H0G C;  2B63 K;  1ZQ1 C;  5M5Y K;  1WCM A;  1USO A;  4GTC A;  2NVT K;  2R92 A;  3GTQ C;  3A8K A;  2E2H K;  2VUM K;  3M4O K;  3S1Q C;  4OIN A;  4A3I K;  1ZYR A;  1EH1 A;  2GSU A;  4YG2 A;  4P5B A;  2NVQ K;  2A6E A;  5M3M K;  1WCM C;  3AD9 C;  2O5J A;  4C2M C;  4OIO A;  2ZUE A;  2R92 C;  3S16 C;  4A93 C;  3ORE A;  4C3H C;  2NVY A;  3LPX A;  5JVO A;  3SZZ A;  1IL2 A;  1TWC A;  5IYD C;  4G7Z A;  1O28 A;  1IW7 A;  2GAG C;  3H3V D;  3DXJ A;  3PO3 K;  4G0W A;  1WOO A;  1YCL A;  5CHP A;  1G51 A;  4QIW L;  3CQZ K;  4KDD A;  2JA8 K;  2O5I A;  1J98 A;  2NVX K;  2E2H A;  5IOQ A;  4LK1 A;  1R9T A;  4GTF A;  5M5W K;  2NVY C;  1J6V A;  1TWF A;  1XXB A;  1SMY A;  1TWC C;  1WOR A;  4BXX K;  2CW0 A;  4FM9 A;  4BY1 K;  1DCP A;  3HOY K;  1HI9 A;  1I3Q K;  4BLB A;  4A3D C;  1VGX A;  1C0A A;  4Y7N K;  4KB2 A;  5CJ9 A;  3FHZ A;  3HOV C;  4GTD A;  4GTA A;  2WAQ D;  2E2H C;  3GTQ K;  3N0B A;  3AD7 C;  2WB1 D;  4FZB A;  1Y1W A;  1R9T C;  1TWF C;  2GSO A;  2E2J K;  4KMA A;  3HOU C;  3OEP A;  1JVI A;  3GTM A;  4ZH4 A;  3FOF A;  3K7A K;  4Q5S A;  4C2M K;  2NVX A;  4A93 K;  2XCO A;  1Y1W C;  1PJ5 A;  3GTK K;  3TFH A;  4AH6 A;  1XZQ B;  4C3H K;  4DDQ A;  3S1M C;  3TTG A;  3GTO A;  5IYD K;  3I4M C;  3S1N C;  4G0U A;  4AYB L;  2FQO A;  3S2H C;  2R7Z A;  1IBA A;  3GTM C;  1XZQ A;  4QJV B;  3G4C A;  2JA8 C;  3S15 C;  1I6H C;  4P5A A;  4OIR A;  4XSZ A;  4KC6 A;  3L4K A;  2NVX C;  4KMD A;  4QJV A;  1BDF A;  1USM A;  1TWC K;  3M3Y K;  1TWH A;  3GTO C;  3GSI A;  1INN A;  3QX3 A;  2P5M A;  2PMZ L;  5FLM C;  2R7Z C;  1WOS A;  3CAG A;  4WJ4 A;  3AQP A;  4C3I C;  4C3J C;  4Y7N C;  2A69 A;  4BY7 C;  1F9N A;  4A3D K;  1VLO A;  1O29 A;  1L0W A;  1PJ6 A;  3HOV K;  2V6T A;  1SFO A;  3GTK A;  1WQG A;  1R9T K;  3BP8 C;  2E2J C;  1TWF K;  5C4X C;  1JQW A;  1WOP A;  1TWH C;  5L46 A;  4OIQ A;  3GEI A;  2V6S A;  3HOU K;  1ZVU A;  4KM9 A;  2PPB A;  4XCH A;  4A3C K;  4J3N A;  1TWG A;  3TFJ A;  2CFA B;  3K7A C;  4M1X A;  1O2B A;  4KAT A;  5EGE A;  1EK8 A;  3L4J A;  1SFO C;  4NOI A;  2PA8 L;  4A3G C;  3GTK C;  1Y1W K;  2CFA A;  4GZY A;  2XCQ A;  1XZP B;  1XXA A;  3S1M K;  1YNJ A;  3RZO C;  2D6F C;  3I4M K;  3S1N K;  4G7O A;  3T01 A;  2JA6 K;  3S2H K;  3S14 C;  1EQR A;  3GTM K;  1TWG C;  1XZP A;  3S15 K;  1I6H K;  2FQT A;  1X31 C;  3I4N K;  4RMF A;  2Y0S L;  3AQO A;  1UV7 A;  4BLA A;  3GEE A;  3JST A;  4KMU A;  4KN7 A;  1DCH A;  3M3Y C;  3A8J A;  3G4A A;  3GTO K;  4KAR A;  3GTL A;  1EFW A;  3NUH A;  5FJ8 K;  2W7V A;  3N3Y A;  5FLM K;  2R7Z K;  3S17 C;  4C3J K;  4C3I K;  4BY7 K;  4LLG A;  3HOZ C;  3LAP A;  5IP7 C;  3GDZ A;  1EI6 A;  1YX2 A;  4MQ9 A;  3GIR A;  3ADA C;  1WIH A;  5E68 A;  5C4X K;  1TWH K;  3GTL C;  2JA6 A;  4A3C C;  3HOX K;  4XLN A;  1BS2 A;  1O25 A;  5C4J C;  3SZY A;  3OPF A;  4A3M K;  3VA7 A;  3EQL A;  2GAH C;  1SFO K;  4A3G K;  3TFI A;  1O2F B;  4A3E C;  2RH6 A;  1VRQ C;  3RZO K;  1O24 A;  2JA6 C;  2XCR B;  2GSN A;  1B4B A;  3S14 K;  3S1R C;  2BE5 A;  1TWG K;  3I4N C;  1RU0 A;  3Q3Q A;  4O2D A;  5M5X K;  5C44 C;  1KQ4 A;  3AH5 A;  4A3K K;  5M3F K;  3GTJ A;  5IP9 C;  3HKZ D;  2ZFZ A;  4JK1 A;  4P9S A;  3S17 K;  4AYB D;  2EBB A;  2A68 A;  3LAJ A;  3PO2 K;  4WJ3 M;  4BKW A;  4KAS A;  5IYC C;  4A3F K;  3HOZ K;  4LOW A;  5IP7 K;  4MEX A;  4LK0 A;  3WOD A;  1XPP A;  3GTG K;  1DCO A;  2R93 A;  3BP3 A;  3GTJ C;  2P8T A;  4X6A K;  1IQ0 A;  3GTL K;  3V4G A;  3MML B;  1K83 A;  4YFX A;  3HOX C;  1AB4 A;  2PMZ D;  1DD5 A;  4GTL A;  2A6H A;  1HQM A;  4A3M C;  2RGR A;  5C4J K;  2JA7 A;  1J6X A;  1XXC A;  3IPJ A;  2JA5 C;  2R93 C;  3H3V L;  1Y1V A;  4G7H A;  3AD8 C;  4OIP A;  1IS1 A;  1TWA K;  3S2D K;  4A3E K;  1K83 C;  4KAW X;  5TJ3 A;  3S1R K;  3GTP A;  2YU9 A;  4Y52 C;  1J6W A;  4Q4Z A;  2JA7 C;  4GFQ A;  5C44 K;  1I6V A;  1F7V A;  3GTG A;  5C3E C;  4YFN A;  4A3K C;  2PA8 D;  1Y1V C;  4MEY A;  5TMF A;  3FKI A;  3HOW C;  1PJ7 A;  3GEH A;  5IP9 K;  4A3L K;  2B63 A;  4PAA A;  1I50 K;  3RZD K;  3S0X A;  5IYB C;  3PO2 C;  2E2I K;  2YU9 C;  3GTP C;  2WAQ L;  1O27 A;  4QIW D;  5JFE A;  2V6U A;  1ISE A;  2WB1 L;  4A3F C;  5IYC K;  2VUM A;  4A3J K;  2KWA A;  1IE0 A;  2Y0S D;  3GTG C;  2Y3P A;  4A3B C;  1B4A A;  3FKI C;  4BBR K;  5IOT A;  4X6A C;  3GTJ K;  1TWA A;  4LR2 A;  4BBS C;  2B63 C;  1GE9 A;  1BJT A;  4GTB A;  3H0G K;  1WQF A;  3A8I A;  2PHC B;  1YNN A;  2NVT C;  5EGH A;  4GTE A;  4C45 A;  2ZUF A;  1BGW A;  1WSV A;  2VUM C;  3M4O C;  1V5V A;  4KB4 A;  4G0V A;  2JA5 K;  4KM8 A;  3N0C A;  4A3I C;  3S1Q K;  2R93 K;  1TWA C;  3S2D C;  1ZXO A;  4KN4 A;  1K83 K;  3T02 A;  1I50 A;  2NVQ C;  3CQZ A;  1WSR A;  2E2I A;  1JOE A;  1WCM K;  2JH3 A;  4Y52 K;  3S16 K;  4GT9 A;  2R92 K;  2JA7 K;  4XSX A;  4YFK A;  3HXA A;  5C3E K;  4LJZ A;  3HKZ L;  1WQH A; 
#chains in the Genus database with same CATH homology
 2FQT A;  1INN A;  1J6V A;  1JOE A;  1J98 A;  1YCL A;  5E68 A;  1VJE A;  1JVI A;  1J6W A;  1J6X A;  1IE0 A;  1VH2 A;  4XCH A;  2FQO A;  1VGX A;  1JQW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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