2FQTA

Crystal structure of b.subtilis luxs in complex with (2s)-2-amino-4-[(2r,3s)-2,3-dihydroxy-3-n-hydroxycarbamoyl-propylmercapto]butyric acid
Total Genus 44
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
154
structure length
154
Chain Sequence
b'VESFELDHNAVVAPYVRHCGVHKVGTDGVVNKFDIRFCQPNKQAMKPDTIHTLEHLLAFTIRSHAEKYDHFDIIDISPMGCQTGYYLVVSGEPTSAEIVDLLEDTMKEAVEITEIPAANEKQCGQAKLHDLEGAKRLMRFWLSQDKEELLKVFG'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Design and Synthesis of Substrate Analogue Inhibitors of S-Ribosylhomocysteinase (LuxS)
pubmed doi rcsb
molecule keywords S-ribosylhomocysteine lyase
source organism Bacillus subtilis
molecule tags Lyase
total genus 44
structure length 154
sequence length 154
ec nomenclature ec 4.4.1.21: S-ribosylhomocysteine lyase.
pdb deposition date 2006-01-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02664 LuxS S-Ribosylhomocysteinase (LuxS)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.80 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 S-ribosylhomocysteinase (LuxS) 2fqtA00
1VGXA 1IE0A 1YCLA 1J6WA 1JVIA 1VJEA 2FQOA 1J98A 2FQTA 1JQWA 4XCHA 1INNA 1J6XA 1VH2A 5E68A 1JOEA 1J6VA
chains in the Genus database with same CATH superfamily
3QX3A 3S2HK 3TFIA 1SFOC 1J6XA 1VH2A 2VUMA 5L46A 4LR2A 4A3LK 3S14K 1TWAC 3PO3K 2JA5K 4GFQA 5IP9K 4A3IK 2B63K 5M5WK 2R93K 1Y1WC 1I50K 1JQWA 3L4JA 5C4JC 4GTEA 2Y3PA 4Y52C 4Y7NC 3GEHA 4XCHA 3TFHA 1R9TA 1XXCA 3ADAC 3CQZA 1WSVA 1YNJA 2JA5A 2FQTA 1I6HC 4A3BC 1TWGK 1ZVUA 3S1RC 2B63A 2R93A 1K83K 4A3DC 4C3JK 1AB4A 4A3GC 5IYCC 3GTKK 3S17K 3G4CA 3HXAA 1J6VA 1JVIA 4BY1K 2WB1L 2JA6K 1B4AA 4P5BA 3T02A 4GTBA 3FKIK 5IOSA 3S15K 3GEEA 5C44K 1O29A 2GSNA 3HOXC 5HL8A 1TWCA 5IYDC 2GSUA 4KM9A 4OINA 4LJZA 4O2DA 5C3EK 1DCOA 3RZDK 4C3IC 3HOVK 2JA7A 4BBSC 2YU9C 4A93C 3BP8C 4A3CC 2E2IA 4C3HK 4KASA 4GTAA 4A3EK 4A3MK 3M4OK 4KN4A 4KN7A 3S1NC 4X6AK 3GTPK 3AQOA 5FLMK 3I4MK 2E2JC 1BDFA 3HOWC 2NVYK 4BKWA 2JA8K 1I3QK 3EQLA 2NVQC 3S1MC 2V6TA 4KDDA 2NVTC 1XZQB 1KQ4A 3FHZA 1WOSA 2GAGC 2P5MA 4KMUA 1UV7A 3ERED 3HKZD 1YX2A 3TTGA 5IORA 2O5JA 2ZUFA 4YFXA 4C3JC 1YNNA 3S1QC 3GTMA 3TFJA 4FZBA 1J98A 1PJ6A 2GSOA 5C4XC 2R7ZC 2NVYA 1SFOA 3FKIC 3S15C 2D6FC 1WCMK 1TWHK 1TWAA 4FM9A 2ZUEA 1R9TK 4PABA 3L4KA 1Y1WA 4QIWD 4KB2A 3CQZK 4GTFA 2WAQL 4OIQA 3S2DK 1O2FB 1XZPA 3S16K 2PMZL 2GAHC 3OREA 3GTJK 1L0WA 3N0BA 3AQPA 1ZYRA 2CFAA 4DDQA 5D4DA 4YFKA 4WILA 2Y0SD 4OIPA 2R92C 3RZOC 4BY7K 3LPXA 1I3QC 1WCMA 4LK0A 1TWHA 2CW0A 1O2AA 1TWCK 1DD5A 4QJVA 1EK8A 1TWFK 3GTLK 3GTQC 4ILDA 1G51A 1Y1VC 5EGHA 2VUMC 4NOIA 1WORA 1DCHA 2JA7K 1ZBSA 4G7OA 2E2IK 3T00A 4YG2A 2E2HK 5IP7K 1WQHA 3WODA 3GTJA 5IYBK 2A69A 2O5IA 3I4NC 1J6WA 3GTGC 1IW7A 3K7AC 5M3MK 1VLOA 4A3JC 3H3VD 4WJ4A 3HOYK 2P8TA 3HOUK 4P5AA 4P9SA 2YU9A 4PAAA 1TWFA 3GTLA 3DXJA 3S2HC 1C0AA 1WQGA 1WSRA 3M3YK 1BJTA 4C2MK 4A3LC 2A6HA 3GTOK 4MQ9A 3S14C 3S2DC 3MMLB 3PO3C 2JA5C 2A6EA 5IP9C 3H0GK 4A3IC 3HOZK 2E2HA 1IQ0A 2B63C 3BUEA 5E68A 3AD7C 2R93C 2W7VA 1I50C 4A3FK 4GTLA 4ZH4A 3AH5A 3H3VL 1JOEA 4C45A 1ZXOA 4OIRA 3GTMK 4G7HA 5TMFA 3GDZA 4BXXK 3NUHA 4OIOA 1USMA 2EBBA 1SFOK 3A8JA 3LAPA 4XSZA 2BE5A 5CJ9A 4AYBD 4MEXA 4A3KK 1TWAK 1GE9A 1F7VA 2NVXA 1Y1WK 3GTOA 4GT9A 3S0XA 2RGRA 2E2IC 3SZYA 1F93A 3H0GA 5C4JK 1TWGC 2R7ZA 1K83C 1HI9A 5IYBC 2PPBA 1BS2A 3GTKC 3S17C 4Y52K 4Y7NK 4LOWA 1YCLA 3AD9C 1INNA 4BY1C 2JA6C 4Q5SA 5TMCA 5JVOA 2V6UA 4XSXA 5C44C 4KATA 4KM8A 3HKZL 1IBAA 1I6HK 5C3EC 1WOPA 4A3BK 3RZDC 3S1RK 3HOVC 4C2MC 4A3DK 1EFWA 4A3GK 5IYCK 1USOA 4C3HC 4WJ3M 1V5VA 4A3EC 4A3MC 3M4OC 1VJEA 2R92A 4X6AC 3GTPC 5FLMC 3HOXK 3I4MC 2XCOA 4YFNA 3FOFA 3GTQA 4J3NA 2NVYC 3OPFA 1Y1VA 2FQOA 2JA8C 4C3IK 1EQRA 3VA7A 4BBSK 4BLAA 4QIWL 4A3KC 2YU9K 4A93K 4A3CK 1WQFA 5JFEA 3GIRA 2XCQA 3S1NK 5M3FK 3GTGA 3CAGA 3GEIA 2E2JK 2Y0SL 1O2BA 3HOWK 4KMDA 3BP3A 2NVQK 3S1MK 3PO2K 1F9NA 2WB1D 4BBRK 2NVTK 2ZFZA 4G0WA 4GTCA 3GSIA 1WCMC 1EH1A 4BLBA 1TWHC 1IE0A 1O25A 1XZQA 1R9TC 4XLNA 4M1XA 1XZPB 2NVXK 1VGXA 1I50A 3CQZC 1O27A 3S1QK 1BGWA 4LQYA 3A8KA 1F7UA 3SZZA 3N3YA 4JK1A 3S16C 2CFAB 1O26A 3G4AA 1XPPA 3GTJC 5C4XK 4LLGA 5FJ8K 2R7ZK 1VRQC 3N0CA 4KMAA 3LAJA 1WOOA 4KC6A 1X31C 1PJ7A 4MEYA 4QJVB 1O28A 1WIHA 4BY7C 3T01A 4LK1A 1O24A 1XXAA 2A68A 1TWCC 4AH6A 1RU0A 1TWFC 5CHPA 4G0UA 3GTLC 1B4BA 2PA8D 1TWGA 4Q4ZA 2V6SA 2JA7C 1K83A 4G7ZA 3GTKA 5M5YK 5IOTA 2E2HC 2PHCB 2XCRB 1DCPA 5IP7C 3IPJA 4KARA 2JA6A 2R92K 3A8IA 4GTDA 3RZOK 4XLPA 3FKIA 3OEPA 1IL2A 4KB4A 3PO2C 4BBRC 4AYBL 3GTQK 2PA8L 5EGEA 3HOYC 1PJ5A 1HQMA 1IS1A 1Y1VK 3AD8C 4G0VA 2VUMK 3HOUC 3FOEA 1ISEA 5M5XK 2KWAA 2NVXC 3M3YC 1EI6A 1ZQ1C 3GTOC 2WAQD 2RH6A 3GTPA 3H0GC 3HOZC 4KMHA 3I4NK 3JSTA 3V4GA 2PMZD 3GTGK 2JH3A 1I6VA 3K7AK 4A3FC 1SMYA 4A3JK 1XXBA 5TJ3A 1I3QA 3GTMC 3Q3QA 5IOQA 4GZYA 4BXXC 4KAWX 4RMFA 5IYDK
chains in the Genus database with same CATH topology
1VGXA 1IE0A 1YCLA 1J6WA 1JVIA 1VJEA 2FQOA 1J98A 2FQTA 1JQWA 4XCHA 1INNA 1J6XA 1VH2A 5E68A 1JOEA 1J6VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VGX A;  1IE0 A;  1YCL A;  1J6W A;  1JVI A;  1VJE A;  2FQO A;  1J98 A;  2FQT A;  1JQW A;  4XCH A;  1INN A;  1J6X A;  1VH2 A;  5E68 A;  1JOE A;  1J6V A; 
#chains in the Genus database with same CATH topology
 3QX3 A;  3S2H K;  3TFI A;  1SFO C;  1J6X A;  1VH2 A;  2VUM A;  5L46 A;  4LR2 A;  4A3L K;  3S14 K;  1TWA C;  3PO3 K;  2JA5 K;  4GFQ A;  5IP9 K;  4A3I K;  2B63 K;  5M5W K;  2R93 K;  1Y1W C;  1I50 K;  1JQW A;  3L4J A;  5C4J C;  4GTE A;  2Y3P A;  4Y52 C;  4Y7N C;  3GEH A;  4XCH A;  3TFH A;  1R9T A;  1XXC A;  3ADA C;  3CQZ A;  1WSV A;  1YNJ A;  2JA5 A;  2FQT A;  1I6H C;  4A3B C;  1TWG K;  1ZVU A;  3S1R C;  2B63 A;  2R93 A;  1K83 K;  4A3D C;  4C3J K;  1AB4 A;  4A3G C;  5IYC C;  3GTK K;  3S17 K;  3G4C A;  3HXA A;  1J6V A;  1JVI A;  4BY1 K;  2WB1 L;  2JA6 K;  1B4A A;  4P5B A;  3T02 A;  4GTB A;  3FKI K;  5IOS A;  3S15 K;  3GEE A;  5C44 K;  1O29 A;  2GSN A;  3HOX C;  5HL8 A;  1TWC A;  5IYD C;  2GSU A;  4KM9 A;  4OIN A;  4LJZ A;  4O2D A;  5C3E K;  1DCO A;  3RZD K;  4C3I C;  3HOV K;  2JA7 A;  4BBS C;  2YU9 C;  4A93 C;  3BP8 C;  4A3C C;  2E2I A;  4C3H K;  4KAS A;  4GTA A;  4A3E K;  4A3M K;  3M4O K;  4KN4 A;  4KN7 A;  3S1N C;  4X6A K;  3GTP K;  3AQO A;  5FLM K;  3I4M K;  2E2J C;  1BDF A;  3HOW C;  2NVY K;  4BKW A;  2JA8 K;  1I3Q K;  3EQL A;  2NVQ C;  3S1M C;  2V6T A;  4KDD A;  2NVT C;  1XZQ B;  1KQ4 A;  3FHZ A;  1WOS A;  2GAG C;  2P5M A;  4KMU A;  1UV7 A;  3ERE D;  3HKZ D;  1YX2 A;  3TTG A;  5IOR A;  2O5J A;  2ZUF A;  4YFX A;  4C3J C;  1YNN A;  3S1Q C;  3GTM A;  3TFJ A;  4FZB A;  1J98 A;  1PJ6 A;  2GSO A;  5C4X C;  2R7Z C;  2NVY A;  1SFO A;  3FKI C;  3S15 C;  2D6F C;  1WCM K;  1TWH K;  1TWA A;  4FM9 A;  2ZUE A;  1R9T K;  4PAB A;  3L4K A;  1Y1W A;  4QIW D;  4KB2 A;  3CQZ K;  4GTF A;  2WAQ L;  4OIQ A;  3S2D K;  1O2F B;  1XZP A;  3S16 K;  2PMZ L;  2GAH C;  3ORE A;  3GTJ K;  1L0W A;  3N0B A;  3AQP A;  1ZYR A;  2CFA A;  4DDQ A;  5D4D A;  4YFK A;  4WIL A;  2Y0S D;  4OIP A;  2R92 C;  3RZO C;  4BY7 K;  3LPX A;  1I3Q C;  1WCM A;  4LK0 A;  1TWH A;  2CW0 A;  1O2A A;  1TWC K;  1DD5 A;  4QJV A;  1EK8 A;  1TWF K;  3GTL K;  3GTQ C;  4ILD A;  1G51 A;  1Y1V C;  5EGH A;  2VUM C;  4NOI A;  1WOR A;  1DCH A;  2JA7 K;  1ZBS A;  4G7O A;  2E2I K;  3T00 A;  4YG2 A;  2E2H K;  5IP7 K;  1WQH A;  3WOD A;  3GTJ A;  5IYB K;  2A69 A;  2O5I A;  3I4N C;  1J6W A;  3GTG C;  1IW7 A;  3K7A C;  5M3M K;  1VLO A;  4A3J C;  3H3V D;  4WJ4 A;  3HOY K;  2P8T A;  3HOU K;  4P5A A;  4P9S A;  2YU9 A;  4PAA A;  1TWF A;  3GTL A;  3DXJ A;  3S2H C;  1C0A A;  1WQG A;  1WSR A;  3M3Y K;  1BJT A;  4C2M K;  4A3L C;  2A6H A;  3GTO K;  4MQ9 A;  3S14 C;  3S2D C;  3MML B;  3PO3 C;  2JA5 C;  2A6E A;  5IP9 C;  3H0G K;  4A3I C;  3HOZ K;  2E2H A;  1IQ0 A;  2B63 C;  3BUE A;  5E68 A;  3AD7 C;  2R93 C;  2W7V A;  1I50 C;  4A3F K;  4GTL A;  4ZH4 A;  3AH5 A;  3H3V L;  1JOE A;  4C45 A;  1ZXO A;  4OIR A;  3GTM K;  4G7H A;  5TMF A;  3GDZ A;  4BXX K;  3NUH A;  4OIO A;  1USM A;  2EBB A;  1SFO K;  3A8J A;  3LAP A;  4XSZ A;  2BE5 A;  5CJ9 A;  4AYB D;  4MEX A;  4A3K K;  1TWA K;  1GE9 A;  1F7V A;  2NVX A;  1Y1W K;  3GTO A;  4GT9 A;  3S0X A;  2RGR A;  2E2I C;  3SZY A;  1F93 A;  3H0G A;  5C4J K;  1TWG C;  2R7Z A;  1K83 C;  1HI9 A;  5IYB C;  2PPB A;  1BS2 A;  3GTK C;  3S17 C;  4Y52 K;  4Y7N K;  4LOW A;  1YCL A;  3AD9 C;  1INN A;  4BY1 C;  2JA6 C;  4Q5S A;  5TMC A;  5JVO A;  2V6U A;  4XSX A;  5C44 C;  4KAT A;  4KM8 A;  3HKZ L;  1IBA A;  1I6H K;  5C3E C;  1WOP A;  4A3B K;  3RZD C;  3S1R K;  3HOV C;  4C2M C;  4A3D K;  1EFW A;  4A3G K;  5IYC K;  1USO A;  4C3H C;  4WJ3 M;  1V5V A;  4A3E C;  4A3M C;  3M4O C;  1VJE A;  2R92 A;  4X6A C;  3GTP C;  5FLM C;  3HOX K;  3I4M C;  2XCO A;  4YFN A;  3FOF A;  3GTQ A;  4J3N A;  2NVY C;  3OPF A;  1Y1V A;  2FQO A;  2JA8 C;  4C3I K;  1EQR A;  3VA7 A;  4BBS K;  4BLA A;  4QIW L;  4A3K C;  2YU9 K;  4A93 K;  4A3C K;  1WQF A;  5JFE A;  3GIR A;  2XCQ A;  3S1N K;  5M3F K;  3GTG A;  3CAG A;  3GEI A;  2E2J K;  2Y0S L;  1O2B A;  3HOW K;  4KMD A;  3BP3 A;  2NVQ K;  3S1M K;  3PO2 K;  1F9N A;  2WB1 D;  4BBR K;  2NVT K;  2ZFZ A;  4G0W A;  4GTC A;  3GSI A;  1WCM C;  1EH1 A;  4BLB A;  1TWH C;  1IE0 A;  1O25 A;  1XZQ A;  1R9T C;  4XLN A;  4M1X A;  1XZP B;  2NVX K;  1VGX A;  1I50 A;  3CQZ C;  1O27 A;  3S1Q K;  1BGW A;  4LQY A;  3A8K A;  1F7U A;  3SZZ A;  3N3Y A;  4JK1 A;  3S16 C;  2CFA B;  1O26 A;  3G4A A;  1XPP A;  3GTJ C;  5C4X K;  4LLG A;  5FJ8 K;  2R7Z K;  1VRQ C;  3N0C A;  4KMA A;  3LAJ A;  1WOO A;  4KC6 A;  1X31 C;  1PJ7 A;  4MEY A;  4QJV B;  1O28 A;  1WIH A;  4BY7 C;  3T01 A;  4LK1 A;  1O24 A;  1XXA A;  2A68 A;  1TWC C;  4AH6 A;  1RU0 A;  1TWF C;  5CHP A;  4G0U A;  3GTL C;  1B4B A;  2PA8 D;  1TWG A;  4Q4Z A;  2V6S A;  2JA7 C;  1K83 A;  4G7Z A;  3GTK A;  5M5Y K;  5IOT A;  2E2H C;  2PHC B;  2XCR B;  1DCP A;  5IP7 C;  3IPJ A;  4KAR A;  2JA6 A;  2R92 K;  3A8I A;  4GTD A;  3RZO K;  4XLP A;  3FKI A;  3OEP A;  1IL2 A;  4KB4 A;  3PO2 C;  4BBR C;  4AYB L;  3GTQ K;  2PA8 L;  5EGE A;  3HOY C;  1PJ5 A;  1HQM A;  1IS1 A;  1Y1V K;  3AD8 C;  4G0V A;  2VUM K;  3HOU C;  3FOE A;  1ISE A;  5M5X K;  2KWA A;  2NVX C;  3M3Y C;  1EI6 A;  1ZQ1 C;  3GTO C;  2WAQ D;  2RH6 A;  3GTP A;  3H0G C;  3HOZ C;  4KMH A;  3I4N K;  3JST A;  3V4G A;  2PMZ D;  3GTG K;  2JH3 A;  1I6V A;  3K7A K;  4A3F C;  1SMY A;  4A3J K;  1XXB A;  5TJ3 A;  1I3Q A;  3GTM C;  3Q3Q A;  5IOQ A;  4GZY A;  4BXX C;  4KAW X;  4RMF A;  5IYD K; 
#chains in the Genus database with same CATH homology
 1VGX A;  1IE0 A;  1YCL A;  1J6W A;  1JVI A;  1VJE A;  2FQO A;  1J98 A;  2FQT A;  1JQW A;  4XCH A;  1INN A;  1J6X A;  1VH2 A;  5E68 A;  1JOE A;  1J6V A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...