2FQZA

Metal-depleted ecl18ki in complex with uncleaved dna
Total Genus 111
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
299
structure length
290
Chain Sequence
LSPGEFKTLISKERKSHFITPFALVYKTFCDLGYDQKNSDYFLNNPSEYIIAMRKNCWKEFEPFEKEFTTRMLSYLIDEERIKDMSPYDAIRDFTMEYPTHIYDLALSNTQSRRSRAGKEFESILELLMMGAGIPVDVQGAIIGKLVDLVMPGVVQYTSNKRNTMLISAKTTLRERWQEVPEEVNRTGIREMYLATLDDSFSEETINILYEANVVVVTTVENKNFKYKNNNRVLTFEDMLQSAMELSRKWNNVSYTDSEKEEIQQSILKQIEKYSDFPYVVNYYRNRLSA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords DNA STRAND 1
publication title Nucleotide flips determine the specificity of the Ecl18kI restriction endonuclease
pubmed doi rcsb
source organism Enterobacter cloacae
total genus 111
structure length 290
sequence length 299
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2006-01-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09019 EcoRII-C EcoRII C terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.91.80 Alpha Beta 3-Layer(aba) Sandwich Restriction Endonuclease Restriction Endonuclease 2fqzA00
2FQZA 2GB7A 3BM3A
chains in the Genus database with same CATH superfamily
5JHTA 3EBJA 5FDDA 2XI5A 5CZNA 2BAMA 3WVHA 1CFRA 1VRRA 2P14A 3N78A 3DVOA 5CGVA 3A4KA 5FDGA 4E5LA 4AWKA 3HW3A 2XI7A 4AWGA 3HW4A 5JHVA 5CL0A 5DBSA 2GB7A 3CAEA 4R28A 1FOKA 3ODHA 3MQYA 3DPGA 4OC8A 4ZQQA 3BM3A 4F0QA 4AWMA 1SDOA 1M0IA 3DW9A 5D2OA 1D2IA 4E5HA 4ZHZA 1ES8A 1M0DA 1ESGA 3V1ZA 2EWFA 4E5FA 1BHMA 4AVQA 2PFJA 2P0JA 5D42A 5D9JA 4AWHA 5D8UA 4E5IA 4E5JA 3WVPA 1DFMA 4ZI0A 4AVGA 4CHCA 3WVIA 3V21A 5DESA 4CGXA 4CGSA 3HW5A 5I13A 3V20A 4AVLA 5D4GA 5CCYA 4YYLA 4E5EA 2FQZA 5EGAA 1FZRA 3HW6A 4E5GA 1BAMA 5DEBA 3N7BA 3WVKA 4AWFA 1KNVA 3WVGA 1DC1A 2FOKA 4NFZA 2E52A 3BAMA 4F0PA 3MQ6A
chains in the Genus database with same CATH topology
5JHTA 3EBJA 5FDDA 2XI5A 5CZNA 2BAMA 3WVHA 1CFRA 1VRRA 2P14A 3N78A 3DVOA 5CGVA 3A4KA 5FDGA 4E5LA 4AWKA 3HW3A 2XI7A 4AWGA 3HW4A 5JHVA 5CL0A 5DBSA 2GB7A 3CAEA 4R28A 1FOKA 3ODHA 3MQYA 3DPGA 4OC8A 4ZQQA 3BM3A 4F0QA 4AWMA 1SDOA 1M0IA 3DW9A 5D2OA 1D2IA 4E5HA 4ZHZA 1ES8A 1M0DA 1ESGA 3V1ZA 2EWFA 4E5FA 1BHMA 4AVQA 2PFJA 2P0JA 5D42A 5D9JA 4AWHA 5D8UA 4E5IA 4E5JA 3WVPA 1DFMA 4ZI0A 4AVGA 4CHCA 3WVIA 3V21A 5DESA 4CGXA 4CGSA 3HW5A 5I13A 3V20A 4AVLA 5D4GA 5CCYA 4YYLA 4E5EA 2FQZA 5EGAA 1FZRA 3HW6A 4E5GA 1BAMA 5DEBA 3N7BA 3WVKA 4AWFA 1KNVA 3WVGA 1DC1A 2FOKA 4NFZA 2E52A 3BAMA 4F0PA 3MQ6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FQZ A;  2GB7 A;  3BM3 A; 
#chains in the Genus database with same CATH topology
 5JHT A;  3EBJ A;  5FDD A;  2XI5 A;  5CZN A;  2BAM A;  3WVH A;  1CFR A;  1VRR A;  2P14 A;  3N78 A;  3DVO A;  5CGV A;  3A4K A;  5FDG A;  4E5L A;  4AWK A;  3HW3 A;  2XI7 A;  4AWG A;  3HW4 A;  5JHV A;  5CL0 A;  5DBS A;  2GB7 A;  3CAE A;  4R28 A;  1FOK A;  3ODH A;  3MQY A;  3DPG A;  4OC8 A;  4ZQQ A;  3BM3 A;  4F0Q A;  4AWM A;  1SDO A;  1M0I A;  3DW9 A;  5D2O A;  1D2I A;  4E5H A;  4ZHZ A;  1ES8 A;  1M0D A;  1ESG A;  3V1Z A;  2EWF A;  4E5F A;  1BHM A;  4AVQ A;  2PFJ A;  2P0J A;  5D42 A;  5D9J A;  4AWH A;  5D8U A;  4E5I A;  4E5J A;  3WVP A;  1DFM A;  4ZI0 A;  4AVG A;  4CHC A;  3WVI A;  3V21 A;  5DES A;  4CGX A;  4CGS A;  3HW5 A;  5I13 A;  3V20 A;  4AVL A;  5D4G A;  5CCY A;  4YYL A;  4E5E A;  2FQZ A;  5EGA A;  1FZR A;  3HW6 A;  4E5G A;  1BAM A;  5DEB A;  3N7B A;  3WVK A;  4AWF A;  1KNV A;  3WVG A;  1DC1 A;  2FOK A;  4NFZ A;  2E52 A;  3BAM A;  4F0P A;  3MQ6 A; 
#chains in the Genus database with same CATH homology
 5JHT A;  3EBJ A;  5FDD A;  2XI5 A;  5CZN A;  2BAM A;  3WVH A;  1CFR A;  1VRR A;  2P14 A;  3N78 A;  3DVO A;  5CGV A;  3A4K A;  5FDG A;  4E5L A;  4AWK A;  3HW3 A;  2XI7 A;  4AWG A;  3HW4 A;  5JHV A;  5CL0 A;  5DBS A;  2GB7 A;  3CAE A;  4R28 A;  1FOK A;  3ODH A;  3MQY A;  3DPG A;  4OC8 A;  4ZQQ A;  3BM3 A;  4F0Q A;  4AWM A;  1SDO A;  1M0I A;  3DW9 A;  5D2O A;  1D2I A;  4E5H A;  4ZHZ A;  1ES8 A;  1M0D A;  1ESG A;  3V1Z A;  2EWF A;  4E5F A;  1BHM A;  4AVQ A;  2PFJ A;  2P0J A;  5D42 A;  5D9J A;  4AWH A;  5D8U A;  4E5I A;  4E5J A;  3WVP A;  1DFM A;  4ZI0 A;  4AVG A;  4CHC A;  3WVI A;  3V21 A;  5DES A;  4CGX A;  4CGS A;  3HW5 A;  5I13 A;  3V20 A;  4AVL A;  5D4G A;  5CCY A;  4YYL A;  4E5E A;  2FQZ A;  5EGA A;  1FZR A;  3HW6 A;  4E5G A;  1BAM A;  5DEB A;  3N7B A;  3WVK A;  4AWF A;  1KNV A;  3WVG A;  1DC1 A;  2FOK A;  4NFZ A;  2E52 A;  3BAM A;  4F0P A;  3MQ6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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