2FSYA

Bacteriophage hk97 pepsin-treated expansion intermediate iv
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
280
structure length
280
Chain Sequence
SLGSDADSAGSLIQPMQIPGIIMPGLRRLTIRDLLAQGRTSSNALEYVREEVFTNNADVVAEKALKPESDITFSKQTANVKTIAHWVQASRQVMDDAPMLQSYINNRLMYGLALKEEGQLLNGDGTGDNLEGLNKVATAYDTSLNATGDTRADIIAHAIYQVTESEFSASGIVLNPRDWHNIALLKDNEGRYIFGGPQAFTSNIMWGLPVVPTKAQAAGTFTVGGFDMASQVWDRMDATVEVSREDRDNFVKNMLTILCEERLALAHYRPTAIIKGTFSS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Virus
molecule keywords major capsid protein
publication title Capsid Conformational Sampling in HK97 Maturation Visualized by X-Ray Crystallography and Cryo-EM.
pubmed doi rcsb
source organism Enterobacteria phage hk97
total genus 57
structure length 280
sequence length 280
chains with identical sequence B, C, D, E, F, G
ec nomenclature
pdb deposition date 2006-01-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05065 Phage_capsid Phage capsid family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2320.10 Alpha Beta 2-Layer Sandwich hypothetical protein PF0899 fold hypothetical protein PF0899 domain 2fsyA02
3.30.2400.10 Alpha Beta 2-Layer Sandwich Major capsid protein gp5 fold Major capsid protein gp5 2fsyA01
1OHGA 3DKTA 3E8KA 2E0ZA 2FT1A 2PK8A 2FSYA
chains in the Genus database with same CATH superfamily
3A43A 2E0ZA 2FSYA 1YUEA 2DM9A 3V6IA 5AUOA 3DKTA 4DT0A 2LC0A 3E8KA 1QU3A 3K5BA 3A44A 4EFAE 2FT1A 2PK8A 1OHGA 5AUPA 2DMAA 1WZ2A 2KDXA 5AUNA 4DL0E
chains in the Genus database with same CATH topology
1OHGA 3DKTA 3E8KA 2E0ZA 2FT1A 2PK8A 2FSYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OHG A;  3DKT A;  3E8K A;  2E0Z A;  2FT1 A;  2PK8 A;  2FSY A; 
#chains in the Genus database with same CATH topology
 3A43 A;  2E0Z A;  2FSY A;  1YUE A;  2DM9 A;  3V6I A;  5AUO A;  3DKT A;  4DT0 A;  2LC0 A;  3E8K A;  1QU3 A;  3K5B A;  3A44 A;  4EFA E;  2FT1 A;  2PK8 A;  1OHG A;  5AUP A;  2DMA A;  1WZ2 A;  2KDX A;  5AUN A;  4DL0 E; 
#chains in the Genus database with same CATH homology
 1OHG A;  3DKT A;  3E8K A;  2E0Z A;  2FT1 A;  2PK8 A;  2FSY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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