2FUG7

Crystal structure of the hydrophilic domain of respiratory complex i from thermus thermophilus
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
127
structure length
127
Chain Sequence
ASSERELYEAWVELLSWMREYAQAKGVRFEKEADFPDFIYRMERPYDLPTTIMTASLSDGLGEPFLLADVSPRHAKLKRIGLRLPRAHIHLHAHYEPGKGLVTGKIPLTKERFFALADRAREALAFA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords NADH-quinone oxidoreductase chain 1
publication title Structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus.
pubmed doi rcsb
total genus 31
structure length 127
sequence length 127
chains with identical sequence H, Q, Z
ec nomenclature
pdb deposition date 2006-01-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
7 PF11497 NADH_Oxid_Nqo15 NADH-quinone oxidoreductase chain 15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.920.80 Alpha Beta 2-Layer Sandwich Metal Transport, Frataxin; Chain A Metal Transport, Frataxin; Chain A 2fug700
3IAS7 2FUG7 3I9V7 3IAM7 4HEA7
chains in the Genus database with same CATH superfamily
2FUG7 2EFFA 1EKGA 3S5EA 3S5FA 3GD9A 3SSCA 3GD0A 4HS5A 4LK8A 2P1XA 4JPDA 3IAM7 3IMOA 4C26A 1SOYA 3T3TA 3SSDA 2FQLA 4HEA7 3A5PA 1LY7A 1EW4A 1V5RA 3T3XA 4P78C 4EC2A 1D2MA 4LP1A 2GA5A 3S4MA 3T3KA 3OEQA 3IAS7 3I9V7 3OERA 1WHZA 3S5DA 3T3JA 3SSEA 3T3LA
chains in the Genus database with same CATH topology
3IAS7 2FUG7 3I9V7 3IAM7 3IMOA 1D2MA 3GD9A 3SSDA 3SSCA 3SSEA 4HEA7 3A5PA 3GD0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3IAS 7;  2FUG 7;  3I9V 7;  3IAM 7;  4HEA 7; 
#chains in the Genus database with same CATH topology
 2FUG 7;  2EFF A;  1EKG A;  3S5E A;  3S5F A;  3GD9 A;  3SSC A;  3GD0 A;  4HS5 A;  4LK8 A;  2P1X A;  4JPD A;  3IAM 7;  3IMO A;  4C26 A;  1SOY A;  3T3T A;  3SSD A;  2FQL A;  4HEA 7;  3A5P A;  1LY7 A;  1EW4 A;  1V5R A;  3T3X A;  4P78 C;  4EC2 A;  1D2M A;  4LP1 A;  2GA5 A;  3S4M A;  3T3K A;  3OEQ A;  3IAS 7;  3I9V 7;  3OER A;  1WHZ A;  3S5D A;  3T3J A;  3SSE A;  3T3L A; 
#chains in the Genus database with same CATH homology
 3IAS 7;  2FUG 7;  3I9V 7;  3IAM 7;  3IMO A;  1D2M A;  3GD9 A;  3SSD A;  3SSC A;  3SSE A;  4HEA 7;  3A5P A;  3GD0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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