2FV4A

Nmr solution structure of the yeast kinetochore spc24/spc25 globular domain
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
89
structure length
89
Chain Sequence
NDAAEVALYERLLQLRVLPGASDVHDVRFVFGDDSRCWIEVAMHGDHVIGNSHPALDPKSRATLEHVLTVQGDLAAFLVVARDMLLASL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Structural protein, protein binding
molecule keywords Hypothetical 25.2 kDa protein in AFG3-SEB2 intergenic region
publication title Structure of a central component of the yeast kinetochore: the spc24p/spc25p globular domain.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 19
structure length 89
sequence length 89
ec nomenclature
pdb deposition date 2006-01-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.457.50 Alpha Beta 2-Layer Sandwich Copper Amine Oxidase; Chain A, domain 1 Copper Amine Oxidase; Chain A, domain 1 2fv4A00
5T6JB 5TCSD 2FV4A 3VZ9B 3VZAA 4GEQA 2FTXA
chains in the Genus database with same CATH superfamily
2WOHA 1SPUA 1JRQA 2W0QA 2FTXA 1QAKA 1QALA 1DYUA 1D6YA 1OACA 3VZ9B 3VZAA 2WGQA 2WO0A 2FV4A 4DZOA 5T6JB 5TCSD 1LVNA 2WOFA 3K1LA 1D6ZA 4GEQA 1D6UA 1QAFA
chains in the Genus database with same CATH topology
5T6JB 5TCSD 2FV4A 3K1LA 3VZ9B 4DZOA 3VZAA 4GEQA 2FTXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5T6J B;  5TCS D;  2FV4 A;  3VZ9 B;  3VZA A;  4GEQ A;  2FTX A; 
#chains in the Genus database with same CATH topology
 2WOH A;  1SPU A;  1JRQ A;  2W0Q A;  2FTX A;  1QAK A;  1QAL A;  1DYU A;  1D6Y A;  1OAC A;  3VZ9 B;  3VZA A;  2WGQ A;  2WO0 A;  2FV4 A;  4DZO A;  5T6J B;  5TCS D;  1LVN A;  2WOF A;  3K1L A;  1D6Z A;  4GEQ A;  1D6U A;  1QAF A; 
#chains in the Genus database with same CATH homology
 5T6J B;  5TCS D;  2FV4 A;  3K1L A;  3VZ9 B;  4DZO A;  3VZA A;  4GEQ A;  2FTX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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