2FY3A

Structures of ligand bound human choline acetyltransferase provides insight into regulation of acetylcholine synthesis
Total Genus 235
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
235
sequence length
599
structure length
595
Chain Sequence
SEESGLPKLPVPPLQQTLATYLQCMRHLVSEEQFRKSQAIVQQFGAPGGLGETLQQKLLERQEKTANWVSEYWLNDMYLNNRLALPVNSSPAVIFARQHFPGTDDQLRFAASLISGVLSYKALLDSHSIPTDCAKGQPLCMKQYYGLFSSYRLPGHTQDTLVAQNSSIMPEPEHVIVACCNQFFVLDVVINFRRLSEGDLFTQLRKIVKMASNAAARLPPIGLLTSDGRSEWAEARTVLVKDSTNRDSLDMIERCICLVCLDAPGGVELSDTHRALQLLHGGGYSKNGANRWYDKSLQFVVGRDGTCGVVCEHSPFDGIVLVQCTEHLLKHMTQPELVRSPMVPLPAPRRLRWKCSPEIQGHLASSAEKLQRIVKNLDFIVYKFDNYGKTFIKKQKCSPDAFIQVALQLAFYRLHRRLVPTYESASIRRFQEGRVDNIRSATPEALAFVRAVTDHKAAVPASEKLLLLKDAIRAQTAYTVMAITGMAIDNHLLALRELARAMCAALPEMFMDETYLMSNRFVLSTSQVPTTTEMFCCYGPVVPNGYGACYNPQPETILFCISSFHSCAATSSSKFAKAVEESLIDMRDLCSLLPP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Substrate binding and catalytic mechanism of human choline acetyltransferase.
pubmed doi rcsb
molecule keywords Choline O-acetyltransferase
source organism Homo sapiens
molecule tags Transferase
total genus 235
structure length 595
sequence length 599
ec nomenclature ec 2.3.1.6: Choline O-acetyltransferase.
pdb deposition date 2006-02-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.40 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 2fy3A01
3.30.559.70 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 2fy3A02
1T7OA 1T7NA 4EPHA 1T1UA 2FY5A 1Q6XA 2H4TA 2FYOA 1NDBA 1T7QA 1S5OA 2H3WA 1NDIA 2FY2A 2H3PA 2FY4A 4EP9A 1NM8A 2FW3A 2RCUA 1NDFA 2H3UA 2DEBA 4EYWA 2FY3A
chains in the Genus database with same CATH superfamily
2II3A 1EAFA 1Q6XA 1EACA 1EAEA 5KJVA 1EADA 3L60A 4G2MA 1S5OA 1EAAA 2CLAA 2FY2A 2IHWA 1XL8A 5KJSA 2E1UA 5KJUA 3U9BA 2XR7A 5DU9A 5KJTA 2FW3A 2RCUA 1DPCA 2ZBAA 1T7NA 4EPHA 1Q23A 1E2OA 5KJWA 1XMDA 2II5A 1T7QA 3CLAA 4G22A 5T3EA 1XL7A 1C4TA 2II4A 1NDIA 2JGPA 2H3PA 1EABA 1NDFA 4CLAA 2FY3A 1CLAA 5FANA 4JN5A 4N72A 3B2SA 2E1TA 2I9DA 1DPDA 2FYOA 1SCZA 1NOCB 3U9FA 1XMCA 4JN3A 2H3WA 3FP0A 4KE4A 3FOTA 2E1VA 2H3UA 2BGHA 2DEBA 3MAEA 1T7OA 2VSQA 1T1UA 3B30A 2FY5A 1L5AA 2H4TA 4G0BA 4HVMA 5FALA 1NDBA 1DPBA 5DUAA 4KECA 1QCAA 2RKVA 2FY4A 4EP9A 1Q9JA 2RKTA 1CIAA 1NM8A 2XHGA 1PD5A 4EYWA
chains in the Genus database with same CATH topology
4JN5A 1T7OA 1T7NA 2VSQA 4EPHA 1T1UA 2FY5A 1L5AA 1Q6XA 2H4TA 2FYOA 4HVMA 1NDBA 1T7QA 5T3EA 5DUAA 1S5OA 4JN3A 2H3WA 3FP0A 1NDIA 2JGPA 3FOTA 2FY2A 2H3PA 2FY4A 4EP9A 1Q9JA 5DU9A 1NM8A 2FW3A 2RCUA 1NDFA 2H3UA 2XHGA 2DEBA 4EYWA 2FY3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1T7O A;  1T7N A;  4EPH A;  1T1U A;  2FY5 A;  1Q6X A;  2H4T A;  2FYO A;  1NDB A;  1T7Q A;  1S5O A;  2H3W A;  1NDI A;  2FY2 A;  2H3P A;  2FY4 A;  4EP9 A;  1NM8 A;  2FW3 A;  2RCU A;  1NDF A;  2H3U A;  2DEB A;  4EYW A;  2FY3 A; 
#chains in the Genus database with same CATH topology
 2II3 A;  1EAF A;  1Q6X A;  1EAC A;  1EAE A;  5KJV A;  1EAD A;  3L60 A;  4G2M A;  1S5O A;  1EAA A;  2CLA A;  2FY2 A;  2IHW A;  1XL8 A;  5KJS A;  2E1U A;  5KJU A;  3U9B A;  2XR7 A;  5DU9 A;  5KJT A;  2FW3 A;  2RCU A;  1DPC A;  2ZBA A;  1T7N A;  4EPH A;  1Q23 A;  1E2O A;  5KJW A;  1XMD A;  2II5 A;  1T7Q A;  3CLA A;  4G22 A;  5T3E A;  1XL7 A;  1C4T A;  2II4 A;  1NDI A;  2JGP A;  2H3P A;  1EAB A;  1NDF A;  4CLA A;  2FY3 A;  1CLA A;  5FAN A;  4JN5 A;  4N72 A;  3B2S A;  2E1T A;  2I9D A;  1DPD A;  2FYO A;  1SCZ A;  1NOC B;  3U9F A;  1XMC A;  4JN3 A;  2H3W A;  3FP0 A;  4KE4 A;  3FOT A;  2E1V A;  2H3U A;  2BGH A;  2DEB A;  3MAE A;  1T7O A;  2VSQ A;  1T1U A;  3B30 A;  2FY5 A;  1L5A A;  2H4T A;  4G0B A;  4HVM A;  5FAL A;  1NDB A;  1DPB A;  5DUA A;  4KEC A;  1QCA A;  2RKV A;  2FY4 A;  4EP9 A;  1Q9J A;  2RKT A;  1CIA A;  1NM8 A;  2XHG A;  1PD5 A;  4EYW A; 
#chains in the Genus database with same CATH homology
 4JN5 A;  1T7O A;  1T7N A;  2VSQ A;  4EPH A;  1T1U A;  2FY5 A;  1L5A A;  1Q6X A;  2H4T A;  2FYO A;  4HVM A;  1NDB A;  1T7Q A;  5T3E A;  5DUA A;  1S5O A;  4JN3 A;  2H3W A;  3FP0 A;  1NDI A;  2JGP A;  3FOT A;  2FY2 A;  2H3P A;  2FY4 A;  4EP9 A;  1Q9J A;  5DU9 A;  1NM8 A;  2FW3 A;  2RCU A;  1NDF A;  2H3U A;  2XHG A;  2DEB A;  4EYW A;  2FY3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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