2FY3A

Structures of ligand bound human choline acetyltransferase provides insight into regulation of acetylcholine synthesis
Total Genus 235
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
235
sequence length
599
structure length
595
Chain Sequence
SEESGLPKLPVPPLQQTLATYLQCMRHLVSEEQFRKSQAIVQQFGAPGGLGETLQQKLLERQEKTANWVSEYWLNDMYLNNRLALPVNSSPAVIFARQHFPGTDDQLRFAASLISGVLSYKALLDSHSIPTDCAKGQPLCMKQYYGLFSSYRLPGHTQDTLVAQNSSIMPEPEHVIVACCNQFFVLDVVINFRRLSEGDLFTQLRKIVKMASNAAARLPPIGLLTSDGRSEWAEARTVLVKDSTNRDSLDMIERCICLVCLDAPGGVELSDTHRALQLLHGGGYSKNGANRWYDKSLQFVVGRDGTCGVVCEHSPFDGIVLVQCTEHLLKHMTQPELVRSPMVPLPAPRRLRWKCSPEIQGHLASSAEKLQRIVKNLDFIVYKFDNYGKTFIKKQKCSPDAFIQVALQLAFYRLHRRLVPTYESASIRRFQEGRVDNIRSATPEALAFVRAVTDHKAAVPASEKLLLLKDAIRAQTAYTVMAITGMAIDNHLLALRELARAMCAALPEMFMDETYLMSNRFVLSTSQVPTTTEMFCCYGPVVPNGYGACYNPQPETILFCISSFHSCAATSSSKFAKAVEESLIDMRDLCSLLPP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords Choline O-acetyltransferase
publication title Substrate binding and catalytic mechanism of human choline acetyltransferase.
pubmed doi rcsb
source organism Homo sapiens
total genus 235
structure length 595
sequence length 599
ec nomenclature ec 2.3.1.6: Choline O-acetyltransferase.
pdb deposition date 2006-02-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.40 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 2fy3A01
3.30.559.70 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 2fy3A02
2FW3A 2FY2A 2H3UA 2FY4A 2FY5A 2H4TA 2FY3A 1NDBA 2H3WA 1S5OA 1NDFA 4EPHA 1NM8A 1NDIA 1T7NA 2RCUA 1Q6XA 1T1UA 4EP9A 2H3PA 4EYWA 2DEBA 2FYOA 1T7OA 1T7QA
chains in the Genus database with same CATH superfamily
4HVMA 2H4TA 1Q23A 1NDBA 1EACA 2ZBAA 5KJVA 1EABA 1S5OA 3U9BA 1NDIA 1T1UA 4G2MA 2RKTA 2H3PA 2DEBA 2FYOA 2CLAA 4JN3A 2II5A 2RKVA 2I9DA 2FY4A 1XMCA 5DUAA 2VSQA 2FY3A 4G0BA 5DU9A 1QCAA 2E1TA 2RCUA 4JN5A 5T3EA 1EAFA 2JGPA 3U9FA 1SCZA 1Q9JA 1EADA 1T7QA 4CLAA 1EAAA 3B30A 3MAEA 2FY2A 1PD5A 5KJTA 1EAEA 1CLAA 1DPDA 4EPHA 1XL7A 1NOCB 1XMDA 1DPBA 1T7NA 5KJWA 1C4TA 2IHWA 4EYWA 5FANA 4KE4A 4N72A 2II4A 2XHGA 2II3A 1XL8A 3B2SA 2XR7A 2FW3A 2E1VA 2H3UA 5KJUA 2FY5A 2BGHA 4KECA 2H3WA 5KJSA 1NDFA 1NM8A 1E2OA 3L60A 1Q6XA 4G22A 1DPCA 3FP0A 5FALA 4EP9A 1L5AA 3FOTA 1CIAA 1T7OA 2E1UA 3CLAA
chains in the Genus database with same CATH topology
4HVMA 2FW3A 2FY2A 2H3UA 2FY4A 2FY5A 2H4TA 5DUAA 2VSQA 2FY3A 5DU9A 1NDBA 2H3WA 1S5OA 1NDFA 4EPHA 1NM8A 1NDIA 1T7NA 2RCUA 4JN5A 1Q6XA 1T1UA 3FP0A 4EP9A 5T3EA 1L5AA 3FOTA 2H3PA 4EYWA 2JGPA 2XHGA 2DEBA 1Q9JA 2FYOA 1T7OA 1T7QA 4JN3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FW3 A;  2FY2 A;  2H3U A;  2FY4 A;  2FY5 A;  2H4T A;  2FY3 A;  1NDB A;  2H3W A;  1S5O A;  1NDF A;  4EPH A;  1NM8 A;  1NDI A;  1T7N A;  2RCU A;  1Q6X A;  1T1U A;  4EP9 A;  2H3P A;  4EYW A;  2DEB A;  2FYO A;  1T7O A;  1T7Q A; 
#chains in the Genus database with same CATH topology
 4HVM A;  2H4T A;  1Q23 A;  1NDB A;  1EAC A;  2ZBA A;  5KJV A;  1EAB A;  1S5O A;  3U9B A;  1NDI A;  1T1U A;  4G2M A;  2RKT A;  2H3P A;  2DEB A;  2FYO A;  2CLA A;  4JN3 A;  2II5 A;  2RKV A;  2I9D A;  2FY4 A;  1XMC A;  5DUA A;  2VSQ A;  2FY3 A;  4G0B A;  5DU9 A;  1QCA A;  2E1T A;  2RCU A;  4JN5 A;  5T3E A;  1EAF A;  2JGP A;  3U9F A;  1SCZ A;  1Q9J A;  1EAD A;  1T7Q A;  4CLA A;  1EAA A;  3B30 A;  3MAE A;  2FY2 A;  1PD5 A;  5KJT A;  1EAE A;  1CLA A;  1DPD A;  4EPH A;  1XL7 A;  1NOC B;  1XMD A;  1DPB A;  1T7N A;  5KJW A;  1C4T A;  2IHW A;  4EYW A;  5FAN A;  4KE4 A;  4N72 A;  2II4 A;  2XHG A;  2II3 A;  1XL8 A;  3B2S A;  2XR7 A;  2FW3 A;  2E1V A;  2H3U A;  5KJU A;  2FY5 A;  2BGH A;  4KEC A;  2H3W A;  5KJS A;  1NDF A;  1NM8 A;  1E2O A;  3L60 A;  1Q6X A;  4G22 A;  1DPC A;  3FP0 A;  5FAL A;  4EP9 A;  1L5A A;  3FOT A;  1CIA A;  1T7O A;  2E1U A;  3CLA A; 
#chains in the Genus database with same CATH homology
 4HVM A;  2FW3 A;  2FY2 A;  2H3U A;  2FY4 A;  2FY5 A;  2H4T A;  5DUA A;  2VSQ A;  2FY3 A;  5DU9 A;  1NDB A;  2H3W A;  1S5O A;  1NDF A;  4EPH A;  1NM8 A;  1NDI A;  1T7N A;  2RCU A;  4JN5 A;  1Q6X A;  1T1U A;  3FP0 A;  4EP9 A;  5T3E A;  1L5A A;  3FOT A;  2H3P A;  4EYW A;  2JGP A;  2XHG A;  2DEB A;  1Q9J A;  2FYO A;  1T7O A;  1T7Q A;  4JN3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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