2FY3A

Structures of ligand bound human choline acetyltransferase provides insight into regulation of acetylcholine synthesis
Total Genus 235
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
235
sequence length
599
structure length
595
Chain Sequence
SEESGLPKLPVPPLQQTLATYLQCMRHLVSEEQFRKSQAIVQQFGAPGGLGETLQQKLLERQEKTANWVSEYWLNDMYLNNRLALPVNSSPAVIFARQHFPGTDDQLRFAASLISGVLSYKALLDSHSIPTDCAKGQPLCMKQYYGLFSSYRLPGHTQDTLVAQNSSIMPEPEHVIVACCNQFFVLDVVINFRRLSEGDLFTQLRKIVKMASNAAARLPPIGLLTSDGRSEWAEARTVLVKDSTNRDSLDMIERCICLVCLDAPGGVELSDTHRALQLLHGGGYSKNGANRWYDKSLQFVVGRDGTCGVVCEHSPFDGIVLVQCTEHLLKHMTQPELVRSPMVPLPAPRRLRWKCSPEIQGHLASSAEKLQRIVKNLDFIVYKFDNYGKTFIKKQKCSPDAFIQVALQLAFYRLHRRLVPTYESASIRRFQEGRVDNIRSATPEALAFVRAVTDHKAAVPASEKLLLLKDAIRAQTAYTVMAITGMAIDNHLLALRELARAMCAALPEMFMDETYLMSNRFVLSTSQVPTTTEMFCCYGPVVPNGYGACYNPQPETILFCISSFHSCAATSSSKFAKAVEESLIDMRDLCSLLPP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
source organism Homo sapiens
publication title Substrate binding and catalytic mechanism of human choline acetyltransferase.
pubmed doi rcsb
molecule keywords Choline O-acetyltransferase
total genus 235
structure length 595
sequence length 599
ec nomenclature ec 2.3.1.6: Choline O-acetyltransferase.
pdb deposition date 2006-02-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.40 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 2fy3A01
3.30.559.70 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 2fy3A02
4EP9A 2H4TA 1NDFA 2H3PA 1T1UA 4EYWA 2FY5A 1Q6XA 2H3WA 2FYOA 1T7NA 1T7QA 2DEBA 1S5OA 1T7OA 2FW3A 1NDIA 2FY3A 2H3UA 2FY2A 1NDBA 1NM8A 2RCUA 4EPHA 2FY4A
chains in the Genus database with same CATH superfamily
2JGPA 2H4TA 5KJUA 4KECA 2DEBA 1T7OA 5DU9A 2H3UA 2FY2A 4CLAA 1C4TA 1EADA 4G2MA 4EP9A 1XMCA 1DPCA 4KE4A 1DPBA 5T3EA 4EYWA 2FY5A 3FOTA 1Q6XA 4HVMA 2H3WA 4JN3A 1DPDA 2ZBAA 1EACA 2II5A 1PD5A 5KJWA 2FW3A 1EAEA 5KJVA 2FY3A 1XL7A 5DUAA 4G0BA 1NM8A 2RCUA 1QCAA 5FALA 2FY4A 1CIAA 2E1UA 1Q23A 2FYOA 1T7NA 1T7QA 4G22A 5FANA 5KJTA 2VSQA 3B2SA 2XHGA 2II3A 2BGHA 3CLAA 1NOCB 2CLAA 1EABA 3MAEA 5KJSA 3FP0A 3U9FA 3L60A 2XR7A 1NDFA 2H3PA 1T1UA 3U9BA 1EAAA 2IHWA 1CLAA 1EAFA 1S5OA 2RKTA 2II4A 1L5AA 1SCZA 1NDIA 4N72A 4JN5A 1Q9JA 1NDBA 2E1VA 1E2OA 1XL8A 1XMDA 2I9DA 4EPHA 3B30A 2RKVA 2E1TA
chains in the Genus database with same CATH topology
2JGPA 4EP9A 2H4TA 1NDFA 2H3PA 1T1UA 5T3EA 4EYWA 2FY5A 3FOTA 1Q6XA 4HVMA 2H3WA 2FYOA 4JN3A 1T7NA 1T7QA 2DEBA 1S5OA 1T7OA 1L5AA 2VSQA 2FW3A 1NDIA 5DU9A 2FY3A 2H3UA 2XHGA 1Q9JA 4JN5A 2FY2A 1NDBA 5DUAA 1NM8A 2RCUA 4EPHA 3FP0A 2FY4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EP9 A;  2H4T A;  1NDF A;  2H3P A;  1T1U A;  4EYW A;  2FY5 A;  1Q6X A;  2H3W A;  2FYO A;  1T7N A;  1T7Q A;  2DEB A;  1S5O A;  1T7O A;  2FW3 A;  1NDI A;  2FY3 A;  2H3U A;  2FY2 A;  1NDB A;  1NM8 A;  2RCU A;  4EPH A;  2FY4 A; 
#chains in the Genus database with same CATH topology
 2JGP A;  2H4T A;  5KJU A;  4KEC A;  2DEB A;  1T7O A;  5DU9 A;  2H3U A;  2FY2 A;  4CLA A;  1C4T A;  1EAD A;  4G2M A;  4EP9 A;  1XMC A;  1DPC A;  4KE4 A;  1DPB A;  5T3E A;  4EYW A;  2FY5 A;  3FOT A;  1Q6X A;  4HVM A;  2H3W A;  4JN3 A;  1DPD A;  2ZBA A;  1EAC A;  2II5 A;  1PD5 A;  5KJW A;  2FW3 A;  1EAE A;  5KJV A;  2FY3 A;  1XL7 A;  5DUA A;  4G0B A;  1NM8 A;  2RCU A;  1QCA A;  5FAL A;  2FY4 A;  1CIA A;  2E1U A;  1Q23 A;  2FYO A;  1T7N A;  1T7Q A;  4G22 A;  5FAN A;  5KJT A;  2VSQ A;  3B2S A;  2XHG A;  2II3 A;  2BGH A;  3CLA A;  1NOC B;  2CLA A;  1EAB A;  3MAE A;  5KJS A;  3FP0 A;  3U9F A;  3L60 A;  2XR7 A;  1NDF A;  2H3P A;  1T1U A;  3U9B A;  1EAA A;  2IHW A;  1CLA A;  1EAF A;  1S5O A;  2RKT A;  2II4 A;  1L5A A;  1SCZ A;  1NDI A;  4N72 A;  4JN5 A;  1Q9J A;  1NDB A;  2E1V A;  1E2O A;  1XL8 A;  1XMD A;  2I9D A;  4EPH A;  3B30 A;  2RKV A;  2E1T A; 
#chains in the Genus database with same CATH homology
 2JGP A;  4EP9 A;  2H4T A;  1NDF A;  2H3P A;  1T1U A;  5T3E A;  4EYW A;  2FY5 A;  3FOT A;  1Q6X A;  4HVM A;  2H3W A;  2FYO A;  4JN3 A;  1T7N A;  1T7Q A;  2DEB A;  1S5O A;  1T7O A;  1L5A A;  2VSQ A;  2FW3 A;  1NDI A;  5DU9 A;  2FY3 A;  2H3U A;  2XHG A;  1Q9J A;  4JN5 A;  2FY2 A;  1NDB A;  5DUA A;  1NM8 A;  2RCU A;  4EPH A;  3FP0 A;  2FY4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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