2FY4A

Structures of ligand bound human choline acetyltransferase provide insight into regulation of acetylcholine synthesis
Total Genus 232
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
232
sequence length
593
structure length
589
Chain Sequence
SGLPKLPVPPLQQTLATYLQCMRHLVSEEQFRKSQAIVQQFGAPGGLGETLQQKLLERQEKTANWVSEYWLNDMYLNNRLALPVNSSPAVIFARQHFPGTDDQLRFAASLISGVLSYKALLDSHSIPTDCAKGQLSGQPLCMKQYYGLFSSYRLPGHTQDTLVAQMPEPEHVIVACCNQFFVLDVVINFRRLSEGDLFTQLRKIVKMASNAAARLPPIGLLTSDGRSEWAEARTVLVKDSTNRDSLDMIERCICLVCLDAPGGVELSDTHRALQLLHGGGYSKNGANRWYDKSLQFVVGRDGTCGVVCEHSPFDGIVLVQCTEHLLKHMTQPELVRSPMVPLPAPRRLRWKCSPEIQGHLASSAEKLQRIVKNLDFIVYKFDNYGKTFIKKQKCSPDAFIQVALQLAFYRLHRRLVPTYESASIRRFQEGRVDNIRSATPEALAFVRAVTDHKAAVPASEKLLLLKDAIRAQTAYTVMAITGMAIDNHLLALRELARAMCAALPEMFMDETYLMSNRFVLSTSQVPTTTEMFCCYGPVVPNGYGACYNPQPETILFCISSFHSCAATSSSKFAKAVEESLIDMRDLCSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords Choline O-acetyltransferase
publication title Substrate binding and catalytic mechanism of human choline acetyltransferase.
pubmed doi rcsb
source organism Homo sapiens
total genus 232
structure length 589
sequence length 593
ec nomenclature ec 2.3.1.6: Choline O-acetyltransferase.
pdb deposition date 2006-02-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.40 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 2fy4A01
3.30.559.70 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 2fy4A02
2FYOA 1NDFA 4EPHA 1NDBA 4EP9A 2FY2A 2DEBA 1T7QA 1T7NA 2H4TA 1NDIA 2RCUA 1T7OA 4EYWA 2FY4A 2FY3A 1S5OA 2H3WA 2H3PA 2H3UA 1Q6XA 2FW3A 2FY5A 1NM8A 1T1UA
chains in the Genus database with same CATH superfamily
4JN3A 2FYOA 4KE4A 5FANA 2II4A 1EACA 4N72A 1XMCA 4EP9A 2DEBA 5DUAA 1NOCB 1DPCA 5T3EA 3L60A 2RKVA 4HVMA 2E1UA 2RKTA 2H3PA 1EADA 2JGPA 1Q9JA 1T1UA 1Q6XA 1C4TA 5DU9A 4JN5A 3U9FA 1SCZA 3MAEA 2ZBAA 1QCAA 1T7NA 2BGHA 2H4TA 3B30A 2XHGA 1PD5A 1EAEA 4KECA 4EYWA 1L5AA 5KJSA 4G22A 1EABA 3U9BA 2FY5A 2E1VA 1XL7A 3B2SA 1NDBA 2II3A 2FY2A 4G0BA 1DPDA 2CLAA 4G2MA 2VSQA 5KJUA 5FALA 1NDIA 5KJWA 3FP0A 1EAFA 3FOTA 2FY4A 2XR7A 1S5OA 2H3WA 1Q23A 2I9DA 1DPBA 2FW3A 3CLAA 1NM8A 1XL8A 1NDFA 4EPHA 1CLAA 1T7QA 1EAAA 4CLAA 5KJVA 1XMDA 2RCUA 5KJTA 1T7OA 2FY3A 2II5A 2H3UA 1CIAA 2IHWA 1E2OA 2E1TA
chains in the Genus database with same CATH topology
4JN3A 5DU9A 2FYOA 4JN5A 1NDFA 4EPHA 1NDBA 4EP9A 2FY2A 2DEBA 5DUAA 1T7QA 1T7NA 2VSQA 2H4TA 1NDIA 5T3EA 2XHGA 3FP0A 2RCUA 1T7OA 4EYWA 3FOTA 2FY4A 4HVMA 2FY3A 1L5AA 1S5OA 2H3WA 2H3PA 2H3UA 2JGPA 1Q6XA 2FW3A 1Q9JA 2FY5A 1NM8A 1T1UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FYO A;  1NDF A;  4EPH A;  1NDB A;  4EP9 A;  2FY2 A;  2DEB A;  1T7Q A;  1T7N A;  2H4T A;  1NDI A;  2RCU A;  1T7O A;  4EYW A;  2FY4 A;  2FY3 A;  1S5O A;  2H3W A;  2H3P A;  2H3U A;  1Q6X A;  2FW3 A;  2FY5 A;  1NM8 A;  1T1U A; 
#chains in the Genus database with same CATH topology
 4JN3 A;  2FYO A;  4KE4 A;  5FAN A;  2II4 A;  1EAC A;  4N72 A;  1XMC A;  4EP9 A;  2DEB A;  5DUA A;  1NOC B;  1DPC A;  5T3E A;  3L60 A;  2RKV A;  4HVM A;  2E1U A;  2RKT A;  2H3P A;  1EAD A;  2JGP A;  1Q9J A;  1T1U A;  1Q6X A;  1C4T A;  5DU9 A;  4JN5 A;  3U9F A;  1SCZ A;  3MAE A;  2ZBA A;  1QCA A;  1T7N A;  2BGH A;  2H4T A;  3B30 A;  2XHG A;  1PD5 A;  1EAE A;  4KEC A;  4EYW A;  1L5A A;  5KJS A;  4G22 A;  1EAB A;  3U9B A;  2FY5 A;  2E1V A;  1XL7 A;  3B2S A;  1NDB A;  2II3 A;  2FY2 A;  4G0B A;  1DPD A;  2CLA A;  4G2M A;  2VSQ A;  5KJU A;  5FAL A;  1NDI A;  5KJW A;  3FP0 A;  1EAF A;  3FOT A;  2FY4 A;  2XR7 A;  1S5O A;  2H3W A;  1Q23 A;  2I9D A;  1DPB A;  2FW3 A;  3CLA A;  1NM8 A;  1XL8 A;  1NDF A;  4EPH A;  1CLA A;  1T7Q A;  1EAA A;  4CLA A;  5KJV A;  1XMD A;  2RCU A;  5KJT A;  1T7O A;  2FY3 A;  2II5 A;  2H3U A;  1CIA A;  2IHW A;  1E2O A;  2E1T A; 
#chains in the Genus database with same CATH homology
 4JN3 A;  5DU9 A;  2FYO A;  4JN5 A;  1NDF A;  4EPH A;  1NDB A;  4EP9 A;  2FY2 A;  2DEB A;  5DUA A;  1T7Q A;  1T7N A;  2VSQ A;  2H4T A;  1NDI A;  5T3E A;  2XHG A;  3FP0 A;  2RCU A;  1T7O A;  4EYW A;  3FOT A;  2FY4 A;  4HVM A;  2FY3 A;  1L5A A;  1S5O A;  2H3W A;  2H3P A;  2H3U A;  2JGP A;  1Q6X A;  2FW3 A;  1Q9J A;  2FY5 A;  1NM8 A;  1T1U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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