2G2UB

Crystal structure of the shv-1 beta-lactamase/beta-lactamase inhibitor protein (blip) complex
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
165
structure length
165
Chain Sequence
AGVMTGAKFTQIQFGMTRQQVLDIAGAENCETGGSFGDSIHCRGHAAGDYYAYATFGFTSAAADAKVDSKSQEKLLAPSAPTLTLAKFNQVTVGMTRAQVLATVGQGSCTTWSEYYPAYPSTAGVTLSLSCFDVDGYSSTGFYRGSAHLWFTDGVLQGKRQWDLV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/hydrolase inhibitor
molecule keywords Beta-lactamase SHV-1
publication title Structural and Computational Characterization of the SHV-1 beta-Lactamase-beta-Lactamase Inhibitor Protein Interface.
pubmed doi rcsb
source organism Klebsiella pneumoniae
total genus 47
structure length 165
sequence length 165
ec nomenclature
pdb deposition date 2006-02-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF07467 BLIP Beta-lactamase inhibitor (BLIP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1450.10 Alpha Beta 2-Layer Sandwich Beta-lactamase Inhibitory Protein; Chain:B, domain 1 Beta-lactamase Inhibitory Protein; Chain:B, domain 1 2g2uB01
3.30.1450.10 Alpha Beta 2-Layer Sandwich Beta-lactamase Inhibitory Protein; Chain:B, domain 1 Beta-lactamase Inhibitory Protein; Chain:B, domain 1 2g2uB02
2KXXA 3E2LC 5D0QE 3D4EA 3C7VB 1JTGB 1S0WC 3GMUB 3C4OB 2YH9A 5EKQE 2G2UB 2PXGA 3E2KC 1XXMC 2B5RC 5D0OE 3C4PB 2G2WB 4DM5A 5AYWE 3N4IB 2KM7A 3C7UB
chains in the Genus database with same CATH superfamily
2KXXA 3E2LC 5D0QE 3D4EA 3C7VB 1JTGB 3NWDA 1S0WC 3GMUB 3C4OB 2YH9A 3NWFA 3NWAA 5EKQE 2G2UB 2PXGA 3E2KC 4HSIA 1XXMC 2GUMA 2B5RC 5D0OE 3C4PB 3FVCA 2G2WB 4DM5A 5AYWE 3N4IB 2KM7A 3NW8A 4L1RA 3C7UB
chains in the Genus database with same CATH topology
2KXXA 3E2LC 5D0QE 3D4EA 3C7VB 1JTGB 3NWDA 1S0WC 3GMUB 3C4OB 2YH9A 3NWFA 3NWAA 5EKQE 2G2UB 2PXGA 3E2KC 4HSIA 1XXMC 2GUMA 2B5RC 5D0OE 3C4PB 3FVCA 2G2WB 4DM5A 5AYWE 3N4IB 2KM7A 3NW8A 4L1RA 3C7UB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KXX A;  3E2L C;  5D0Q E;  3D4E A;  3C7V B;  1JTG B;  1S0W C;  3GMU B;  3C4O B;  2YH9 A;  5EKQ E;  2G2U B;  2PXG A;  3E2K C;  1XXM C;  2B5R C;  5D0O E;  3C4P B;  2G2W B;  4DM5 A;  5AYW E;  3N4I B;  2KM7 A;  3C7U B; 
#chains in the Genus database with same CATH topology
 2KXX A;  3E2L C;  5D0Q E;  3D4E A;  3C7V B;  1JTG B;  3NWD A;  1S0W C;  3GMU B;  3C4O B;  2YH9 A;  3NWF A;  3NWA A;  5EKQ E;  2G2U B;  2PXG A;  3E2K C;  4HSI A;  1XXM C;  2GUM A;  2B5R C;  5D0O E;  3C4P B;  3FVC A;  2G2W B;  4DM5 A;  5AYW E;  3N4I B;  2KM7 A;  3NW8 A;  4L1R A;  3C7U B; 
#chains in the Genus database with same CATH homology
 2KXX A;  3E2L C;  5D0Q E;  3D4E A;  3C7V B;  1JTG B;  3NWD A;  1S0W C;  3GMU B;  3C4O B;  2YH9 A;  3NWF A;  3NWA A;  5EKQ E;  2G2U B;  2PXG A;  3E2K C;  4HSI A;  1XXM C;  2GUM A;  2B5R C;  5D0O E;  3C4P B;  3FVC A;  2G2W B;  4DM5 A;  5AYW E;  3N4I B;  2KM7 A;  3NW8 A;  4L1R A;  3C7U B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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