2G2UB

Crystal structure of the shv-1 beta-lactamase/beta-lactamase inhibitor protein (blip) complex
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
165
structure length
165
Chain Sequence
AGVMTGAKFTQIQFGMTRQQVLDIAGAENCETGGSFGDSIHCRGHAAGDYYAYATFGFTSAAADAKVDSKSQEKLLAPSAPTLTLAKFNQVTVGMTRAQVLATVGQGSCTTWSEYYPAYPSTAGVTLSLSCFDVDGYSSTGFYRGSAHLWFTDGVLQGKRQWDLV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Beta-lactamase SHV-1
publication title Structural and Computational Characterization of the SHV-1 beta-Lactamase-beta-Lactamase Inhibitor Protein Interface.
pubmed doi rcsb
source organism Klebsiella pneumoniae
molecule tags Hydrolase/hydrolase inhibitor
total genus 47
structure length 165
sequence length 165
ec nomenclature
pdb deposition date 2006-02-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF07467 BLIP Beta-lactamase inhibitor (BLIP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1450.10 Alpha Beta 2-Layer Sandwich Beta-lactamase Inhibitory Protein; Chain:B, domain 1 Beta-lactamase Inhibitory Protein; Chain:B, domain 1 2g2uB01
3.30.1450.10 Alpha Beta 2-Layer Sandwich Beta-lactamase Inhibitory Protein; Chain:B, domain 1 Beta-lactamase Inhibitory Protein; Chain:B, domain 1 2g2uB02
3C4OB 3E2KC 3C7VB 3C7UB 3E2LC 2G2WB 1XXMC 1JTGB 5AYWE 5D0OE 2G2UB 1S0WC 4DM5A 2YH9A 3C4PB 3GMUB 3N4IB 5D0QE 2B5RC 2KXXA 2PXGA 5EKQE 2KM7A 3D4EA
chains in the Genus database with same CATH superfamily
3C4OB 3E2KC 3C7VB 2GUMA 3C7UB 3E2LC 4HSIA 3NWDA 2G2WB 1XXMC 1JTGB 5AYWE 5D0OE 2G2UB 1S0WC 4DM5A 2YH9A 3NWAA 3C4PB 3GMUB 3N4IB 5D0QE 2B5RC 3NW8A 4L1RA 3FVCA 2KXXA 3NWFA 2PXGA 5EKQE 2KM7A 3D4EA
chains in the Genus database with same CATH topology
3C4OB 3E2KC 3C7VB 2GUMA 3C7UB 3E2LC 4HSIA 3NWDA 2G2WB 1XXMC 1JTGB 5AYWE 5D0OE 2G2UB 1S0WC 4DM5A 2YH9A 3NWAA 3C4PB 3GMUB 3N4IB 5D0QE 2B5RC 3NW8A 4L1RA 3FVCA 2KXXA 3NWFA 2PXGA 5EKQE 2KM7A 3D4EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3C4O B;  3E2K C;  3C7V B;  3C7U B;  3E2L C;  2G2W B;  1XXM C;  1JTG B;  5AYW E;  5D0O E;  2G2U B;  1S0W C;  4DM5 A;  2YH9 A;  3C4P B;  3GMU B;  3N4I B;  5D0Q E;  2B5R C;  2KXX A;  2PXG A;  5EKQ E;  2KM7 A;  3D4E A; 
#chains in the Genus database with same CATH topology
 3C4O B;  3E2K C;  3C7V B;  2GUM A;  3C7U B;  3E2L C;  4HSI A;  3NWD A;  2G2W B;  1XXM C;  1JTG B;  5AYW E;  5D0O E;  2G2U B;  1S0W C;  4DM5 A;  2YH9 A;  3NWA A;  3C4P B;  3GMU B;  3N4I B;  5D0Q E;  2B5R C;  3NW8 A;  4L1R A;  3FVC A;  2KXX A;  3NWF A;  2PXG A;  5EKQ E;  2KM7 A;  3D4E A; 
#chains in the Genus database with same CATH homology
 3C4O B;  3E2K C;  3C7V B;  2GUM A;  3C7U B;  3E2L C;  4HSI A;  3NWD A;  2G2W B;  1XXM C;  1JTG B;  5AYW E;  5D0O E;  2G2U B;  1S0W C;  4DM5 A;  2YH9 A;  3NWA A;  3C4P B;  3GMU B;  3N4I B;  5D0Q E;  2B5R C;  3NW8 A;  4L1R A;  3FVC A;  2KXX A;  3NWF A;  2PXG A;  5EKQ E;  2KM7 A;  3D4E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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