2G2WB

Crystal structure of the shv d104k beta-lactamase/beta-lactamase inhibitor protein (blip) complex
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
165
structure length
164
Chain Sequence
AGVMTGAKFTQIQFGMTRQQVLDIAGAENCETGGSFGDSIHCRGHAAGDYYAYATFGFTSAAADAKVDSKSQEKLLAPSAPTLTLAKFNQVTVGMTRAQVLATVGQGSCTTWSEYYPAYPSTAGVTLSLSCFDVDGYSTGFYRGSAHLWFTDGVLQGKRQWDLV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/hydrolase inhibitor
molecule keywords Beta-lactamase SHV-1
publication title Structural and Computational Characterization of the SHV-1 beta-Lactamase-beta-Lactamase Inhibitor Protein Interface.
pubmed doi rcsb
source organism Klebsiella pneumoniae
total genus 44
structure length 164
sequence length 165
ec nomenclature
pdb deposition date 2006-02-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF07467 BLIP Beta-lactamase inhibitor (BLIP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1450.10 Alpha Beta 2-Layer Sandwich Beta-lactamase Inhibitory Protein; Chain:B, domain 1 Beta-lactamase Inhibitory Protein; Chain:B, domain 1 2g2wB01
3.30.1450.10 Alpha Beta 2-Layer Sandwich Beta-lactamase Inhibitory Protein; Chain:B, domain 1 Beta-lactamase Inhibitory Protein; Chain:B, domain 1 2g2wB02
2PXGA 5D0QE 1JTGB 3E2KC 3D4EA 3C4OB 3C7UB 3GMUB 1XXMC 2G2WB 5AYWE 3N4IB 2KM7A 4DM5A 2YH9A 2B5RC 3E2LC 2KXXA 5EKQE 3C4PB 1S0WC 2G2UB 5D0OE 3C7VB
chains in the Genus database with same CATH superfamily
3NWFA 2PXGA 5D0QE 1JTGB 3NW8A 3E2KC 3D4EA 4HSIA 3C4OB 3C7UB 3GMUB 1XXMC 2G2WB 5AYWE 3N4IB 2KM7A 4DM5A 2YH9A 2B5RC 3FVCA 3NWDA 3E2LC 2KXXA 5EKQE 3C4PB 1S0WC 2G2UB 2GUMA 3NWAA 5D0OE 4L1RA 3C7VB
chains in the Genus database with same CATH topology
3NWFA 2PXGA 5D0QE 1JTGB 3NW8A 3E2KC 3D4EA 4HSIA 3C4OB 3C7UB 3GMUB 1XXMC 2G2WB 5AYWE 3N4IB 2KM7A 4DM5A 2YH9A 2B5RC 3FVCA 3NWDA 3E2LC 2KXXA 5EKQE 3C4PB 1S0WC 2G2UB 2GUMA 3NWAA 5D0OE 4L1RA 3C7VB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PXG A;  5D0Q E;  1JTG B;  3E2K C;  3D4E A;  3C4O B;  3C7U B;  3GMU B;  1XXM C;  2G2W B;  5AYW E;  3N4I B;  2KM7 A;  4DM5 A;  2YH9 A;  2B5R C;  3E2L C;  2KXX A;  5EKQ E;  3C4P B;  1S0W C;  2G2U B;  5D0O E;  3C7V B; 
#chains in the Genus database with same CATH topology
 3NWF A;  2PXG A;  5D0Q E;  1JTG B;  3NW8 A;  3E2K C;  3D4E A;  4HSI A;  3C4O B;  3C7U B;  3GMU B;  1XXM C;  2G2W B;  5AYW E;  3N4I B;  2KM7 A;  4DM5 A;  2YH9 A;  2B5R C;  3FVC A;  3NWD A;  3E2L C;  2KXX A;  5EKQ E;  3C4P B;  1S0W C;  2G2U B;  2GUM A;  3NWA A;  5D0O E;  4L1R A;  3C7V B; 
#chains in the Genus database with same CATH homology
 3NWF A;  2PXG A;  5D0Q E;  1JTG B;  3NW8 A;  3E2K C;  3D4E A;  4HSI A;  3C4O B;  3C7U B;  3GMU B;  1XXM C;  2G2W B;  5AYW E;  3N4I B;  2KM7 A;  4DM5 A;  2YH9 A;  2B5R C;  3FVC A;  3NWD A;  3E2L C;  2KXX A;  5EKQ E;  3C4P B;  1S0W C;  2G2U B;  2GUM A;  3NWA A;  5D0O E;  4L1R A;  3C7V B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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