2G7CA

Clostridium difficile toxin a fragment bound to agal(1,3)bgal(1,4)bglcnac
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
245
structure length
245
Chain Sequence
GMRTIDGKKYYFNTNTAEAATGWQTIDGKKYYFNTNTSIASTGYTIINDKHFYFNTDGIMQIGVFKGPDGFEYFAPANTDANNIEGQAIRYQNRFLYLHDNIYYFGNNSKAATGWVTIDGRRYYFEPNTAIGANGYKIIDNKNFYFRNGLPQIGVFKGPNGFEYFAPANTDANNIDGQAIRYQNRFLHLLGNIYYFGNNSKAVTGWQTINGNMYYFMPDTAMAAAGGLFEIDGVIYFFGVDGVKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Carbohydrate recognition by Clostridium difficile toxin A.
pubmed doi rcsb
molecule tags Toxin
source organism Clostridium difficile
molecule keywords Toxin A
total genus 42
structure length 245
sequence length 245
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-02-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01473 CW_binding_1 Putative cell wall binding repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.270.10 Mainly Beta Ribbon left handed beta-beta-3-solenoid Cholin Binding 2g7cA03
2.10.270.10 Mainly Beta Ribbon left handed beta-beta-3-solenoid Cholin Binding 2g7cA02
2.10.270.10 Mainly Beta Ribbon left handed beta-beta-3-solenoid Cholin Binding 2g7cA01
2X8OA 1H09A 2VYUA 1H8GA 3KLLA 2X8PA 4NBZA 4X36A 4NC2A 2J8GA 2G7CA 3TTOA 4TVCA 4NC0A 2J8FA 3KLKA 2IXVA 2BMLA 2QJ6A 3HIAA 3HZ3A 1HCXA 2IXUA 4TTUA 2V05A 4NBXA 4TVDA 4AYGA 4NBYA 2X8MA 1OBAA 2V04A 1GVMA 3TTQA 2F6EA
chains in the Genus database with same CATH superfamily
2X8OA 1H09A 2VYUA 1H8GA 3KLLA 2X8PA 4NBZA 4X36A 4NC2A 2J8GA 2G7CA 3TTOA 4TVCA 4NC0A 2J8FA 3KLKA 2IXVA 2BMLA 2QJ6A 3HIAA 3HZ3A 1HCXA 2IXUA 4TTUA 2V05A 4NBXA 4TVDA 4AYGA 4NBYA 2X8MA 1OBAA 2V04A 1GVMA 3TTQA 2F6EA
chains in the Genus database with same CATH topology
2X8OA 1H09A 2VYUA 1H8GA 3KLLA 2X8PA 4NBZA 4X36A 4NC2A 2J8GA 2G7CA 3TTOA 4TVCA 4NC0A 2J8FA 3KLKA 2IXVA 2BMLA 2QJ6A 3HIAA 3HZ3A 1HCXA 2IXUA 4TTUA 2V05A 4NBXA 4TVDA 4AYGA 4NBYA 2X8MA 1OBAA 2V04A 1GVMA 3TTQA 2F6EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2X8O A;  1H09 A;  2VYU A;  1H8G A;  3KLL A;  2X8P A;  4NBZ A;  4X36 A;  4NC2 A;  2J8G A;  2G7C A;  3TTO A;  4TVC A;  4NC0 A;  2J8F A;  3KLK A;  2IXV A;  2BML A;  2QJ6 A;  3HIA A;  3HZ3 A;  1HCX A;  2IXU A;  4TTU A;  2V05 A;  4NBX A;  4TVD A;  4AYG A;  4NBY A;  2X8M A;  1OBA A;  2V04 A;  1GVM A;  3TTQ A;  2F6E A; 
#chains in the Genus database with same CATH topology
 2X8O A;  1H09 A;  2VYU A;  1H8G A;  3KLL A;  2X8P A;  4NBZ A;  4X36 A;  4NC2 A;  2J8G A;  2G7C A;  3TTO A;  4TVC A;  4NC0 A;  2J8F A;  3KLK A;  2IXV A;  2BML A;  2QJ6 A;  3HIA A;  3HZ3 A;  1HCX A;  2IXU A;  4TTU A;  2V05 A;  4NBX A;  4TVD A;  4AYG A;  4NBY A;  2X8M A;  1OBA A;  2V04 A;  1GVM A;  3TTQ A;  2F6E A; 
#chains in the Genus database with same CATH homology
 2X8O A;  1H09 A;  2VYU A;  1H8G A;  3KLL A;  2X8P A;  4NBZ A;  4X36 A;  4NC2 A;  2J8G A;  2G7C A;  3TTO A;  4TVC A;  4NC0 A;  2J8F A;  3KLK A;  2IXV A;  2BML A;  2QJ6 A;  3HIA A;  3HZ3 A;  1HCX A;  2IXU A;  4TTU A;  2V05 A;  4NBX A;  4TVD A;  4AYG A;  4NBY A;  2X8M A;  1OBA A;  2V04 A;  1GVM A;  3TTQ A;  2F6E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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