2G7CA

Clostridium difficile toxin a fragment bound to agal(1,3)bgal(1,4)bglcnac
Total Genus 42
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
245
structure length
245
Chain Sequence
GMRTIDGKKYYFNTNTAEAATGWQTIDGKKYYFNTNTSIASTGYTIINDKHFYFNTDGIMQIGVFKGPDGFEYFAPANTDANNIEGQAIRYQNRFLYLHDNIYYFGNNSKAATGWVTIDGRRYYFEPNTAIGANGYKIIDNKNFYFRNGLPQIGVFKGPNGFEYFAPANTDANNIDGQAIRYQNRFLHLLGNIYYFGNNSKAVTGWQTINGNMYYFMPDTAMAAAGGLFEIDGVIYFFGVDGVKA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Toxin
molecule keywords Toxin A
publication title Carbohydrate recognition by Clostridium difficile toxin A.
pubmed doi rcsb
source organism Clostridium difficile
total genus 42
structure length 245
sequence length 245
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-02-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01473 CW_binding_1 Putative cell wall binding repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.270.10 Mainly Beta Ribbon left handed beta-beta-3-solenoid Cholin Binding 2g7cA03
2.10.270.10 Mainly Beta Ribbon left handed beta-beta-3-solenoid Cholin Binding 2g7cA02
2.10.270.10 Mainly Beta Ribbon left handed beta-beta-3-solenoid Cholin Binding 2g7cA01
3HZ3A 2QJ6A 4TTUA 3HIAA 3TTOA 2J8GA 4X36A 4NC2A 2IXUA 2V05A 3TTQA 2G7CA 2V04A 3KLKA 1H8GA 4NBYA 2X8OA 3KLLA 1OBAA 1GVMA 2BMLA 2VYUA 4NBXA 2F6EA 2J8FA 4TVDA 1H09A 4AYGA 1HCXA 4NBZA 4TVCA 2X8MA 4NC0A 2IXVA 2X8PA
chains in the Genus database with same CATH superfamily
3HZ3A 2QJ6A 4TTUA 3HIAA 3TTOA 2J8GA 4X36A 4NC2A 2IXUA 2V05A 3TTQA 2G7CA 2V04A 3KLKA 1H8GA 4NBYA 2X8OA 3KLLA 1OBAA 1GVMA 2BMLA 2VYUA 4NBXA 2F6EA 2J8FA 4TVDA 1H09A 4AYGA 1HCXA 4NBZA 4TVCA 2X8MA 4NC0A 2IXVA 2X8PA
chains in the Genus database with same CATH topology
3HZ3A 2QJ6A 4TTUA 3HIAA 3TTOA 2J8GA 4X36A 4NC2A 2IXUA 2V05A 3TTQA 2G7CA 2V04A 3KLKA 1H8GA 4NBYA 2X8OA 3KLLA 1OBAA 1GVMA 2BMLA 2VYUA 4NBXA 2F6EA 2J8FA 4TVDA 1H09A 4AYGA 1HCXA 4NBZA 4TVCA 2X8MA 4NC0A 2IXVA 2X8PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HZ3 A;  2QJ6 A;  4TTU A;  3HIA A;  3TTO A;  2J8G A;  4X36 A;  4NC2 A;  2IXU A;  2V05 A;  3TTQ A;  2G7C A;  2V04 A;  3KLK A;  1H8G A;  4NBY A;  2X8O A;  3KLL A;  1OBA A;  1GVM A;  2BML A;  2VYU A;  4NBX A;  2F6E A;  2J8F A;  4TVD A;  1H09 A;  4AYG A;  1HCX A;  4NBZ A;  4TVC A;  2X8M A;  4NC0 A;  2IXV A;  2X8P A; 
#chains in the Genus database with same CATH topology
 3HZ3 A;  2QJ6 A;  4TTU A;  3HIA A;  3TTO A;  2J8G A;  4X36 A;  4NC2 A;  2IXU A;  2V05 A;  3TTQ A;  2G7C A;  2V04 A;  3KLK A;  1H8G A;  4NBY A;  2X8O A;  3KLL A;  1OBA A;  1GVM A;  2BML A;  2VYU A;  4NBX A;  2F6E A;  2J8F A;  4TVD A;  1H09 A;  4AYG A;  1HCX A;  4NBZ A;  4TVC A;  2X8M A;  4NC0 A;  2IXV A;  2X8P A; 
#chains in the Genus database with same CATH homology
 3HZ3 A;  2QJ6 A;  4TTU A;  3HIA A;  3TTO A;  2J8G A;  4X36 A;  4NC2 A;  2IXU A;  2V05 A;  3TTQ A;  2G7C A;  2V04 A;  3KLK A;  1H8G A;  4NBY A;  2X8O A;  3KLL A;  1OBA A;  1GVM A;  2BML A;  2VYU A;  4NBX A;  2F6E A;  2J8F A;  4TVD A;  1H09 A;  4AYG A;  1HCX A;  4NBZ A;  4TVC A;  2X8M A;  4NC0 A;  2IXV A;  2X8P A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...