2GB7A

Metal-depleted ecl18ki in complex with uncleaved, modified dna
Total Genus 116
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
116
sequence length
300
structure length
293
Chain Sequence
RLSPGEFKTLISKERKSHFITPFALVYKTFCDLGYDQKNSDYFLNNPSEYIIAMRKNCWKEFEPFEKEFTTRMLSYLIDEERIKDMSPYDAIRDFTMEYPTHIYDLALSNTQSRRSRAGKEFESILELLMMGAGIPVDVQGAINQIGKLVDLVMPGVVQYTSNKRNTMLISAKTTLRERWQEVPEEVNRTGIREMYLATLDDSFSEETINILYEANVVVVTTVENKNFKYKNNNRVLTFEDMLQSAMELSRKWNNVSYTDSEKEEIQQSILKQIEKYSDFPYVVNYYRNRLSA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords DNA STRAND 1
publication title Nucleotide flips determine the specificity of the Ecl18kI restriction endonuclease
pubmed doi rcsb
source organism Enterobacter cloacae
total genus 116
structure length 293
sequence length 300
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2006-03-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09019 EcoRII-C EcoRII C terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.91.80 Alpha Beta 3-Layer(aba) Sandwich Restriction Endonuclease Restriction Endonuclease 2gb7A00
2FQZA 2GB7A 3BM3A
chains in the Genus database with same CATH superfamily
5FDDA 3N7BA 5D9JA 4E5FA 5D4GA 4ZI0A 1DC1A 4AWKA 3HW3A 1D2IA 3BAMA 2XI5A 4YYLA 2EWFA 3WVHA 4R28A 4AWGA 2FQZA 3CAEA 5EGAA 1DFMA 3N78A 4E5LA 4E5JA 3V1ZA 4AVGA 5D8UA 5D2OA 4AWHA 5CGVA 4E5IA 4CGXA 4E5GA 2BAMA 5CL0A 5CZNA 5DEBA 1ESGA 2E52A 1FZRA 2GB7A 2P14A 3EBJA 4F0QA 3WVKA 1M0DA 1BAMA 3DW9A 1VRRA 3HW5A 2XI7A 3WVPA 4F0PA 1FOKA 5DESA 4ZQQA 3WVGA 1CFRA 2FOKA 1KNVA 1BHMA 5I13A 3DPGA 3DVOA 3V20A 4E5EA 1M0IA 5JHVA 4NFZA 3MQ6A 4E5HA 5JHTA 1SDOA 4OC8A 5DBSA 4AWMA 3MQYA 3A4KA 3HW6A 5CCYA 3BM3A 1ES8A 5D42A 2P0JA 3ODHA 5FDGA 3HW4A 4AWFA 3WVIA 4AVLA 3V21A 4CHCA 4ZHZA 2PFJA 4AVQA 4CGSA
chains in the Genus database with same CATH topology
5FDDA 3N7BA 5D9JA 4E5FA 5D4GA 4ZI0A 1DC1A 4AWKA 3HW3A 1D2IA 3BAMA 2XI5A 4YYLA 2EWFA 3WVHA 4R28A 4AWGA 2FQZA 3CAEA 5EGAA 1DFMA 3N78A 4E5LA 4E5JA 3V1ZA 4AVGA 5D8UA 5D2OA 4AWHA 5CGVA 4E5IA 4CGXA 4E5GA 2BAMA 5CL0A 5CZNA 5DEBA 1ESGA 2E52A 1FZRA 2GB7A 2P14A 3EBJA 4F0QA 3WVKA 1M0DA 1BAMA 3DW9A 1VRRA 3HW5A 2XI7A 3WVPA 4F0PA 1FOKA 5DESA 4ZQQA 3WVGA 1CFRA 2FOKA 1KNVA 1BHMA 5I13A 3DPGA 3DVOA 3V20A 4E5EA 1M0IA 5JHVA 4NFZA 3MQ6A 4E5HA 5JHTA 1SDOA 4OC8A 5DBSA 4AWMA 3MQYA 3A4KA 3HW6A 5CCYA 3BM3A 1ES8A 5D42A 2P0JA 3ODHA 5FDGA 3HW4A 4AWFA 3WVIA 4AVLA 3V21A 4CHCA 4ZHZA 2PFJA 4AVQA 4CGSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FQZ A;  2GB7 A;  3BM3 A; 
#chains in the Genus database with same CATH topology
 5FDD A;  3N7B A;  5D9J A;  4E5F A;  5D4G A;  4ZI0 A;  1DC1 A;  4AWK A;  3HW3 A;  1D2I A;  3BAM A;  2XI5 A;  4YYL A;  2EWF A;  3WVH A;  4R28 A;  4AWG A;  2FQZ A;  3CAE A;  5EGA A;  1DFM A;  3N78 A;  4E5L A;  4E5J A;  3V1Z A;  4AVG A;  5D8U A;  5D2O A;  4AWH A;  5CGV A;  4E5I A;  4CGX A;  4E5G A;  2BAM A;  5CL0 A;  5CZN A;  5DEB A;  1ESG A;  2E52 A;  1FZR A;  2GB7 A;  2P14 A;  3EBJ A;  4F0Q A;  3WVK A;  1M0D A;  1BAM A;  3DW9 A;  1VRR A;  3HW5 A;  2XI7 A;  3WVP A;  4F0P A;  1FOK A;  5DES A;  4ZQQ A;  3WVG A;  1CFR A;  2FOK A;  1KNV A;  1BHM A;  5I13 A;  3DPG A;  3DVO A;  3V20 A;  4E5E A;  1M0I A;  5JHV A;  4NFZ A;  3MQ6 A;  4E5H A;  5JHT A;  1SDO A;  4OC8 A;  5DBS A;  4AWM A;  3MQY A;  3A4K A;  3HW6 A;  5CCY A;  3BM3 A;  1ES8 A;  5D42 A;  2P0J A;  3ODH A;  5FDG A;  3HW4 A;  4AWF A;  3WVI A;  4AVL A;  3V21 A;  4CHC A;  4ZHZ A;  2PFJ A;  4AVQ A;  4CGS A; 
#chains in the Genus database with same CATH homology
 5FDD A;  3N7B A;  5D9J A;  4E5F A;  5D4G A;  4ZI0 A;  1DC1 A;  4AWK A;  3HW3 A;  1D2I A;  3BAM A;  2XI5 A;  4YYL A;  2EWF A;  3WVH A;  4R28 A;  4AWG A;  2FQZ A;  3CAE A;  5EGA A;  1DFM A;  3N78 A;  4E5L A;  4E5J A;  3V1Z A;  4AVG A;  5D8U A;  5D2O A;  4AWH A;  5CGV A;  4E5I A;  4CGX A;  4E5G A;  2BAM A;  5CL0 A;  5CZN A;  5DEB A;  1ESG A;  2E52 A;  1FZR A;  2GB7 A;  2P14 A;  3EBJ A;  4F0Q A;  3WVK A;  1M0D A;  1BAM A;  3DW9 A;  1VRR A;  3HW5 A;  2XI7 A;  3WVP A;  4F0P A;  1FOK A;  5DES A;  4ZQQ A;  3WVG A;  1CFR A;  2FOK A;  1KNV A;  1BHM A;  5I13 A;  3DPG A;  3DVO A;  3V20 A;  4E5E A;  1M0I A;  5JHV A;  4NFZ A;  3MQ6 A;  4E5H A;  5JHT A;  1SDO A;  4OC8 A;  5DBS A;  4AWM A;  3MQY A;  3A4K A;  3HW6 A;  5CCY A;  3BM3 A;  1ES8 A;  5D42 A;  2P0J A;  3ODH A;  5FDG A;  3HW4 A;  4AWF A;  3WVI A;  4AVL A;  3V21 A;  4CHC A;  4ZHZ A;  2PFJ A;  4AVQ A;  4CGS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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