2GF5A

Structure of intact fadd (mort1)
Total Genus 66
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
sequence length
191
structure length
191
Chain Sequence
SDPFLVLLHSVSSSLSSSELTELKYLCLGRVGKRKLERVQSGLDLFSMLLEQNDLEPGHTELLRELLASLRRHDLLRRVDDFEAGAAAGAAPGEEDLCAAFNVICDNVGKDWRRLARQLKVSDTKIDSIEDRYPRNLTERVRESLRIWKNTEKENATVAHLVGALRSCQMNLVADLVQEVQQARDLQNRSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Apoptosis
molecule keywords FADD protein
publication title The Structure of FADD and Its Mode of Interaction with Procaspase-8
pubmed doi rcsb
source organism Homo sapiens
total genus 66
structure length 191
sequence length 191
ec nomenclature
pdb deposition date 2006-03-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00531 Death Death domain
A PF01335 DED Death effector domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 2gf5A02
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 2gf5A01
3KATA 4F44A 2B1WA 1A1ZA 1A1WA 4D8OA 2N97A 4P4HI 4N1KA 2GF5A 1NGRA 2DO9A 2IB1A 4O6XA 2M5VA 2DBFA 3QF2A 4JUPA 2L6AA 2LWEA 2MS7A 2L9MA 2YVIA 4ZBWA 2N1FA 2A9IA 2N83A 4N1JA 2DBGA 3MOPA 2D96A 2F1SA 4O9LA 1C15A 2BBRA 3MOPK 3EZQB 3J6JA 1WMGA 4I16A 3LQRA 2DBDA 3YGSC 2N7ZA 4O7QA 2MPCA 4JQWA 2MB9A 2DBHA 4UZ0A 4FH0A 4A2WA 1D2ZB 1PN5A 1WXPA 2N80A 4F42A 4P4HA 2MS8A 2KM6A 3LQQA 1YGOA 4IZAB 3MOPG 1WH4A 2BBZA 2G7RA 2YGSA 1CWWA 2VGQA 1Z6TA 2LS7A 1DGNA 3T6PA 3YGSP 1E41A 4DWNA 4N1LA 4IZ7B 4LWDA 2HM2Q 4EWIA 3CRDA 4M9ZA 2N00A 2OF5A 1ICHA 1CY5A 1E3YA 1UCPA 2KN6A 2NAQA 4NQKA 2A5YB 4M9SA 2OF5H 3EZQA 4E9MA 1FADA 4O9FA 1N3KA 3J63A 2NSNA 2LWDA 2NZ7A 4M9XA 2P1HA 1DDFA 2YQFA 4A2QA 2O71A 1D2ZA 3CL3A 4RHWA 4QOBA 4IZ5E 2MN4A 4RHWE 2YU0A
chains in the Genus database with same CATH superfamily
3KATA 4F44A 2B1WA 1A1ZA 1A1WA 4D8OA 2N97A 4P4HI 4N1KA 2GF5A 1NGRA 2DO9A 2IB1A 4O6XA 2M5VA 2DBFA 3QF2A 4JUPA 2L6AA 2LWEA 2MS7A 2L9MA 2YVIA 4ZBWA 2N1FA 2A9IA 2N83A 4N1JA 2DBGA 3MOPA 2D96A 2F1SA 4O9LA 1C15A 2BBRA 3MOPK 3EZQB 3J6JA 1WMGA 4I16A 3LQRA 2DBDA 3YGSC 2N7ZA 4O7QA 2MPCA 4JQWA 2MB9A 2DBHA 4UZ0A 4FH0A 4A2WA 1D2ZB 1PN5A 1WXPA 2N80A 4F42A 4P4HA 2MS8A 2KM6A 3LQQA 1YGOA 4IZAB 3MOPG 1WH4A 2BBZA 2G7RA 2YGSA 1CWWA 2VGQA 1Z6TA 2LS7A 1DGNA 3T6PA 3YGSP 1E41A 4DWNA 4N1LA 4IZ7B 4LWDA 2HM2Q 4EWIA 3CRDA 4M9ZA 2N00A 2OF5A 1ICHA 1CY5A 1E3YA 1UCPA 2KN6A 2NAQA 4NQKA 2A5YB 4M9SA 2OF5H 3EZQA 4E9MA 1FADA 2XV9A 4O9FA 1N3KA 3J63A 2NSNA 2LWDA 2NZ7A 4M9XA 2P1HA 1DDFA 2YQFA 4A2QA 2O71A 1D2ZA 2MJMA 3CL3A 4RHWA 4QOBA 4IZ5E 2MN4A 4RHWE 2YU0A
chains in the Genus database with same CATH topology
3KATA 4F44A 2B1WA 1A1ZA 1A1WA 4D8OA 2N97A 4P4HI 4N1KA 2GF5A 1NGRA 2DO9A 2IB1A 4O6XA 2M5VA 2DBFA 3QF2A 4JUPA 2L6AA 2LWEA 2MS7A 2L9MA 2YVIA 4ZBWA 2N1FA 2A9IA 2N83A 4N1JA 2DBGA 3MOPA 2D96A 2F1SA 4O9LA 1C15A 2BBRA 3MOPK 3EZQB 3J6JA 1WMGA 4I16A 3LQRA 2DBDA 3YGSC 2N7ZA 4O7QA 2MPCA 4JQWA 2MB9A 2DBHA 4UZ0A 4FH0A 4A2WA 1D2ZB 1PN5A 1WXPA 2N80A 4F42A 4P4HA 2MS8A 2KM6A 3LQQA 1YGOA 4IZAB 3MOPG 1WH4A 2BBZA 2G7RA 2YGSA 1CWWA 2VGQA 1Z6TA 2LS7A 1DGNA 3T6PA 3YGSP 1E41A 4DWNA 4N1LA 4IZ7B 4LWDA 2HM2Q 4EWIA 3CRDA 4M9ZA 2N00A 2OF5A 1ICHA 1CY5A 1E3YA 1UCPA 2KN6A 2NAQA 4NQKA 2A5YB 4M9SA 2OF5H 3EZQA 4E9MA 1FADA 2XV9A 4O9FA 1N3KA 3J63A 2NSNA 2LWDA 2NZ7A 4M9XA 2P1HA 1DDFA 2YQFA 4A2QA 2O71A 1D2ZA 2MJMA 3CL3A 4RHWA 4QOBA 4IZ5E 2MN4A 4RHWE 2YU0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KAT A;  4F44 A;  2B1W A;  1A1Z A;  1A1W A;  4D8O A;  2N97 A;  4P4H I;  4N1K A;  2GF5 A;  1NGR A;  2DO9 A;  2IB1 A;  4O6X A;  2M5V A;  2DBF A;  3QF2 A;  4JUP A;  2L6A A;  2LWE A;  2MS7 A;  2L9M A;  2YVI A;  4ZBW A;  2N1F A;  2A9I A;  2N83 A;  4N1J A;  2DBG A;  3MOP A;  2D96 A;  2F1S A;  4O9L A;  1C15 A;  2BBR A;  3MOP K;  3EZQ B;  3J6J A;  1WMG A;  4I16 A;  3LQR A;  2DBD A;  3YGS C;  2N7Z A;  4O7Q A;  2MPC A;  4JQW A;  2MB9 A;  2DBH A;  4UZ0 A;  4FH0 A;  4A2W A;  1D2Z B;  1PN5 A;  1WXP A;  2N80 A;  4F42 A;  4P4H A;  2MS8 A;  2KM6 A;  3LQQ A;  1YGO A;  4IZA B;  3MOP G;  1WH4 A;  2BBZ A;  2G7R A;  2YGS A;  1CWW A;  2VGQ A;  1Z6T A;  2LS7 A;  1DGN A;  3T6P A;  3YGS P;  1E41 A;  4DWN A;  4N1L A;  4IZ7 B;  4LWD A;  2HM2 Q;  4EWI A;  3CRD A;  4M9Z A;  2N00 A;  2OF5 A;  1ICH A;  1CY5 A;  1E3Y A;  1UCP A;  2KN6 A;  2NAQ A;  4NQK A;  2A5Y B;  4M9S A;  2OF5 H;  3EZQ A;  4E9M A;  1FAD A;  4O9F A;  1N3K A;  3J63 A;  2NSN A;  2LWD A;  2NZ7 A;  4M9X A;  2P1H A;  1DDF A;  2YQF A;  4A2Q A;  2O71 A;  1D2Z A;  3CL3 A;  4RHW A;  4QOB A;  4IZ5 E;  2MN4 A;  4RHW E;  2YU0 A; 
#chains in the Genus database with same CATH topology
 3KAT A;  4F44 A;  2B1W A;  1A1Z A;  1A1W A;  4D8O A;  2N97 A;  4P4H I;  4N1K A;  2GF5 A;  1NGR A;  2DO9 A;  2IB1 A;  4O6X A;  2M5V A;  2DBF A;  3QF2 A;  4JUP A;  2L6A A;  2LWE A;  2MS7 A;  2L9M A;  2YVI A;  4ZBW A;  2N1F A;  2A9I A;  2N83 A;  4N1J A;  2DBG A;  3MOP A;  2D96 A;  2F1S A;  4O9L A;  1C15 A;  2BBR A;  3MOP K;  3EZQ B;  3J6J A;  1WMG A;  4I16 A;  3LQR A;  2DBD A;  3YGS C;  2N7Z A;  4O7Q A;  2MPC A;  4JQW A;  2MB9 A;  2DBH A;  4UZ0 A;  4FH0 A;  4A2W A;  1D2Z B;  1PN5 A;  1WXP A;  2N80 A;  4F42 A;  4P4H A;  2MS8 A;  2KM6 A;  3LQQ A;  1YGO A;  4IZA B;  3MOP G;  1WH4 A;  2BBZ A;  2G7R A;  2YGS A;  1CWW A;  2VGQ A;  1Z6T A;  2LS7 A;  1DGN A;  3T6P A;  3YGS P;  1E41 A;  4DWN A;  4N1L A;  4IZ7 B;  4LWD A;  2HM2 Q;  4EWI A;  3CRD A;  4M9Z A;  2N00 A;  2OF5 A;  1ICH A;  1CY5 A;  1E3Y A;  1UCP A;  2KN6 A;  2NAQ A;  4NQK A;  2A5Y B;  4M9S A;  2OF5 H;  3EZQ A;  4E9M A;  1FAD A;  2XV9 A;  4O9F A;  1N3K A;  3J63 A;  2NSN A;  2LWD A;  2NZ7 A;  4M9X A;  2P1H A;  1DDF A;  2YQF A;  4A2Q A;  2O71 A;  1D2Z A;  2MJM A;  3CL3 A;  4RHW A;  4QOB A;  4IZ5 E;  2MN4 A;  4RHW E;  2YU0 A; 
#chains in the Genus database with same CATH homology
 3KAT A;  4F44 A;  2B1W A;  1A1Z A;  1A1W A;  4D8O A;  2N97 A;  4P4H I;  4N1K A;  2GF5 A;  1NGR A;  2DO9 A;  2IB1 A;  4O6X A;  2M5V A;  2DBF A;  3QF2 A;  4JUP A;  2L6A A;  2LWE A;  2MS7 A;  2L9M A;  2YVI A;  4ZBW A;  2N1F A;  2A9I A;  2N83 A;  4N1J A;  2DBG A;  3MOP A;  2D96 A;  2F1S A;  4O9L A;  1C15 A;  2BBR A;  3MOP K;  3EZQ B;  3J6J A;  1WMG A;  4I16 A;  3LQR A;  2DBD A;  3YGS C;  2N7Z A;  4O7Q A;  2MPC A;  4JQW A;  2MB9 A;  2DBH A;  4UZ0 A;  4FH0 A;  4A2W A;  1D2Z B;  1PN5 A;  1WXP A;  2N80 A;  4F42 A;  4P4H A;  2MS8 A;  2KM6 A;  3LQQ A;  1YGO A;  4IZA B;  3MOP G;  1WH4 A;  2BBZ A;  2G7R A;  2YGS A;  1CWW A;  2VGQ A;  1Z6T A;  2LS7 A;  1DGN A;  3T6P A;  3YGS P;  1E41 A;  4DWN A;  4N1L A;  4IZ7 B;  4LWD A;  2HM2 Q;  4EWI A;  3CRD A;  4M9Z A;  2N00 A;  2OF5 A;  1ICH A;  1CY5 A;  1E3Y A;  1UCP A;  2KN6 A;  2NAQ A;  4NQK A;  2A5Y B;  4M9S A;  2OF5 H;  3EZQ A;  4E9M A;  1FAD A;  2XV9 A;  4O9F A;  1N3K A;  3J63 A;  2NSN A;  2LWD A;  2NZ7 A;  4M9X A;  2P1H A;  1DDF A;  2YQF A;  4A2Q A;  2O71 A;  1D2Z A;  2MJM A;  3CL3 A;  4RHW A;  4QOB A;  4IZ5 E;  2MN4 A;  4RHW E;  2YU0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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