2GG6A

Cp4 epsp synthase liganded with s3p
Total Genus 142
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
142
sequence length
445
structure length
445
Chain Sequence
SSRPATARKSSGLSGTVRIPGDKSISHRSFMFGGLASGETRITGLLEGEDVINTGKAMQAMGARIRKEGDTWIIDGVGNGGLLAPEAPLDFGNAATGCRLTMGLVGVYDFDSTFIGDASLTKRPMGRVLNPLREMGVQVKSEDGDRLPVTLRGPKTPTPITYRVPMASAQVKSAVLLAGLNTPGITTVIEPIMTRDHTEKMLQGFGANLTVETDADGVRTIRLEGRGKLTGQVIDVPGDPSSTAFPLVAALLVPGSDVTILNVLMNPTRTGLILTLQEMGADIEVINPRLAGGEDVADLRVRSSTLKGVTVPEDRAPSMIDEYPILAVAAAFAEGATVMNGLEELRVKESDRLSAVANGLKLNGVDCDEGETSLVVRGRPDGKGLGNASGAAVATHLDHRIAMSFLVMGLVSENPVTVDDATMIATSFPEFMDLMAGLGAKIELS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Molecular basis for the herbicide resistance of Roundup Ready crops.
pubmed doi rcsb
molecule tags Transferase
source organism Agrobacterium sp.
molecule keywords 3-phosphoshikimate 1-carboxyvinyltransferase
total genus 142
structure length 445
sequence length 445
ec nomenclature ec 2.5.1.19: 3-phosphoshikimate 1-carboxyvinyltransferase.
pdb deposition date 2006-03-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00275 EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 2gg6A02
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 2gg6A01
1X8TA 3SWEA 5BUFA 3KQAA 4EGRA 4E7CA 2QFQA 2QFSA 4N3PA 4EIIA 2PQCA 2AA9A 2GG4A 1P89A 2O15A 2O0DA 2AAYA 2O0EA 2O0BA 3SWIA 3ZH3A 2RL2A 5U4HA 3SG1A 2Z2CA 3TI2A 3SWQA 4E7BA 4E7FA 3R38A 3KR6A 3KQJA 2GG6A 2O0XA 1A2NA 4E7EA 3SU9A 3FK1A 1MI4A 3TR1A 3VCYA 1Q3GA 3UPKA 1RF4A 3SLHA 2RL1A 3FJXA 3FJZA 1UAEA 1NAWA 1G6TA 1RF5A 2BJBA 1EYNA 3ZH4A 2QFUA 2YVWA 5BS5A 3SPBA 2PQBA 4FQDA 1P88A 1G6SA 2O0ZA 3SWAA 1EJCA 3SWDA 1X8RA 3LTHA 1DLGA 2GGDA 3FK0A 3V5VA 3NVSA 1RF6A 3RMTA 3ROIA 2PQDA 4E7DA 1YBGA 3SWGA 3ISSA 1RYWA 4GFPA 2QFTA 2PQ9A 1Q36A 2GGAA 4ZNDA 3V4TA 1EJDA 4R7UA 4E7GA 5BQ2A
chains in the Genus database with same CATH superfamily
1X8TA 3SWEA 5BUFA 3KQAA 4EGRA 4E7CA 2QFQA 2QFSA 3PQVA 4CLQA 4N3PA 4EIIA 2PQCA 2AA9A 2GG4A 1P89A 2O15A 2O0DA 2AAYA 2O0EA 2O0BA 3SWIA 3ZH3A 2RL2A 5U4HA 3SG1A 2Z2CA 3TI2A 3SWQA 4E7BA 4E7FA 3R38A 3KR6A 3KQJA 2GG6A 2O0XA 1A2NA 4E7EA 3SU9A 3FK1A 1MI4A 3TR1A 3VCYA 1Q3GA 3UPKA 1RF4A 3SLHA 2RL1A 3FJXA 3TV1A 3FJZA 1UAEA 3TW3A 1QMIA 1NAWA 1G6TA 1RF5A 2BJBA 1EYNA 3ZH4A 2QFUA 2YVWA 5BS5A 3SPBA 2PQBA 4FQDA 1P88A 1G6SA 2O0ZA 3SWAA 1EJCA 3SWDA 1X8RA 3LTHA 1DLGA 2GGDA 3FK0A 3V5VA 3NVSA 1RF6A 3RMTA 3ROIA 2PQDA 4E7DA 1YBGA 3SWGA 3ISSA 1RYWA 4O89A 4GFPA 3TUTA 2QFTA 2PQ9A 1QMHA 3KGDA 4O8JA 1Q36A 2GGAA 4ZNDA 3V4TA 1EJDA 3TUXA 4R7UA 4E7GA 5BQ2A
chains in the Genus database with same CATH topology
1X8TA 3SWEA 5BUFA 3KQAA 4EGRA 4E7CA 2QFQA 2QFSA 4N3PA 4EIIA 2PQCA 2AA9A 2GG4A 1P89A 2O15A 2O0DA 2AAYA 2O0EA 2O0BA 3SWIA 3ZH3A 2RL2A 5U4HA 3SG1A 2Z2CA 3TI2A 3SWQA 4E7BA 4E7FA 3R38A 3KR6A 3KQJA 2GG6A 2O0XA 1A2NA 4E7EA 3SU9A 3FK1A 1MI4A 3TR1A 3VCYA 1Q3GA 3UPKA 1RF4A 3SLHA 2RL1A 3FJXA 3FJZA 1UAEA 1NAWA 1G6TA 1RF5A 2BJBA 1EYNA 3ZH4A 2QFUA 2YVWA 5BS5A 3SPBA 2PQBA 4FQDA 1P88A 1G6SA 2O0ZA 3SWAA 1EJCA 3SWDA 1X8RA 3LTHA 1DLGA 2GGDA 3FK0A 3V5VA 3NVSA 1RF6A 3RMTA 3ROIA 2PQDA 4E7DA 1YBGA 3SWGA 3ISSA 1RYWA 4GFPA 2QFTA 2PQ9A 1Q36A 2GGAA 4ZNDA 3V4TA 1EJDA 4R7UA 4E7GA 5BQ2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1X8T A;  3SWE A;  5BUF A;  3KQA A;  4EGR A;  4E7C A;  2QFQ A;  2QFS A;  4N3P A;  4EII A;  2PQC A;  2AA9 A;  2GG4 A;  1P89 A;  2O15 A;  2O0D A;  2AAY A;  2O0E A;  2O0B A;  3SWI A;  3ZH3 A;  2RL2 A;  5U4H A;  3SG1 A;  2Z2C A;  3TI2 A;  3SWQ A;  4E7B A;  4E7F A;  3R38 A;  3KR6 A;  3KQJ A;  2GG6 A;  2O0X A;  1A2N A;  4E7E A;  3SU9 A;  3FK1 A;  1MI4 A;  3TR1 A;  3VCY A;  1Q3G A;  3UPK A;  1RF4 A;  3SLH A;  2RL1 A;  3FJX A;  3FJZ A;  1UAE A;  1NAW A;  1G6T A;  1RF5 A;  2BJB A;  1EYN A;  3ZH4 A;  2QFU A;  2YVW A;  5BS5 A;  3SPB A;  2PQB A;  4FQD A;  1P88 A;  1G6S A;  2O0Z A;  3SWA A;  1EJC A;  3SWD A;  1X8R A;  3LTH A;  1DLG A;  2GGD A;  3FK0 A;  3V5V A;  3NVS A;  1RF6 A;  3RMT A;  3ROI A;  2PQD A;  4E7D A;  1YBG A;  3SWG A;  3ISS A;  1RYW A;  4GFP A;  2QFT A;  2PQ9 A;  1Q36 A;  2GGA A;  4ZND A;  3V4T A;  1EJD A;  4R7U A;  4E7G A;  5BQ2 A; 
#chains in the Genus database with same CATH topology
 1X8T A;  3SWE A;  5BUF A;  3KQA A;  4EGR A;  4E7C A;  2QFQ A;  2QFS A;  3PQV A;  4CLQ A;  4N3P A;  4EII A;  2PQC A;  2AA9 A;  2GG4 A;  1P89 A;  2O15 A;  2O0D A;  2AAY A;  2O0E A;  2O0B A;  3SWI A;  3ZH3 A;  2RL2 A;  5U4H A;  3SG1 A;  2Z2C A;  3TI2 A;  3SWQ A;  4E7B A;  4E7F A;  3R38 A;  3KR6 A;  3KQJ A;  2GG6 A;  2O0X A;  1A2N A;  4E7E A;  3SU9 A;  3FK1 A;  1MI4 A;  3TR1 A;  3VCY A;  1Q3G A;  3UPK A;  1RF4 A;  3SLH A;  2RL1 A;  3FJX A;  3TV1 A;  3FJZ A;  1UAE A;  3TW3 A;  1QMI A;  1NAW A;  1G6T A;  1RF5 A;  2BJB A;  1EYN A;  3ZH4 A;  2QFU A;  2YVW A;  5BS5 A;  3SPB A;  2PQB A;  4FQD A;  1P88 A;  1G6S A;  2O0Z A;  3SWA A;  1EJC A;  3SWD A;  1X8R A;  3LTH A;  1DLG A;  2GGD A;  3FK0 A;  3V5V A;  3NVS A;  1RF6 A;  3RMT A;  3ROI A;  2PQD A;  4E7D A;  1YBG A;  3SWG A;  3ISS A;  1RYW A;  4O89 A;  4GFP A;  3TUT A;  2QFT A;  2PQ9 A;  1QMH A;  3KGD A;  4O8J A;  1Q36 A;  2GGA A;  4ZND A;  3V4T A;  1EJD A;  3TUX A;  4R7U A;  4E7G A;  5BQ2 A; 
#chains in the Genus database with same CATH homology
 1X8T A;  3SWE A;  5BUF A;  3KQA A;  4EGR A;  4E7C A;  2QFQ A;  2QFS A;  4N3P A;  4EII A;  2PQC A;  2AA9 A;  2GG4 A;  1P89 A;  2O15 A;  2O0D A;  2AAY A;  2O0E A;  2O0B A;  3SWI A;  3ZH3 A;  2RL2 A;  5U4H A;  3SG1 A;  2Z2C A;  3TI2 A;  3SWQ A;  4E7B A;  4E7F A;  3R38 A;  3KR6 A;  3KQJ A;  2GG6 A;  2O0X A;  1A2N A;  4E7E A;  3SU9 A;  3FK1 A;  1MI4 A;  3TR1 A;  3VCY A;  1Q3G A;  3UPK A;  1RF4 A;  3SLH A;  2RL1 A;  3FJX A;  3FJZ A;  1UAE A;  1NAW A;  1G6T A;  1RF5 A;  2BJB A;  1EYN A;  3ZH4 A;  2QFU A;  2YVW A;  5BS5 A;  3SPB A;  2PQB A;  4FQD A;  1P88 A;  1G6S A;  2O0Z A;  3SWA A;  1EJC A;  3SWD A;  1X8R A;  3LTH A;  1DLG A;  2GGD A;  3FK0 A;  3V5V A;  3NVS A;  1RF6 A;  3RMT A;  3ROI A;  2PQD A;  4E7D A;  1YBG A;  3SWG A;  3ISS A;  1RYW A;  4GFP A;  2QFT A;  2PQ9 A;  1Q36 A;  2GGA A;  4ZND A;  3V4T A;  1EJD A;  4R7U A;  4E7G A;  5BQ2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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