2GIDB

Crystal structures of trypanosoma bruciei mrp1/mrp2
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
146
structure length
146
Chain Sequence
SLPKFEIHDVRDDPAEGTMTRVAVDGKLLLISQYPQLGPRKVDPNDLSPQFDADRRISVRLRHVDLAYLVGVCKERVPRHRMETKAYTLDFEKSAQGYHLHGKVHRVASQRMEDWSVKFDNHFAVTLEHFLESALDESFGFRQHYA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Translation
molecule keywords mitochondrial RNA-binding protein 2
publication title Crystal Structures of T. brucei MRP1/MRP2 Guide-RNA Binding Complex Reveal RNA Matchmaking Mechanism.
pubmed doi rcsb
source organism Trypanosoma brucei
total genus 29
structure length 146
sequence length 146
chains with identical sequence D, J, K
ec nomenclature
pdb deposition date 2006-03-28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.31.40 Mainly Beta Roll Transcriptional Co-activator pc4; Chain A Transcriptional Co-activator pc4; Chain A 2gidB00
2GIDB 2GJEA 2GIAB 2GJED 2GIDA 2GIAA
chains in the Genus database with same CATH superfamily
3N1KA 3R9YA 2GJEA 3CM1A 4BOBA 3N1HA 4AGHA 3N1IA 4BODA 4BG7A 2GIDA 2M4FA 2C62A 2GIAB 3RA0A 2IT9A 3MTVA 2GJED 2PHEA 4USGA 2NVNA 1PCFA 3N1LA 2GIDB 1L3AA 3OBHA 4KOOA 3R9ZA 4BXMA 4J38A 4KOPA 3N1JA 4KOQA 3K44A 4BF3A 4BHMA 2GIAA 5FGPA
chains in the Genus database with same CATH topology
4BXMA 4J38A 2M4FA 2GIDB 2GJEA 2GIAB 3CM1A 4BOBA 3K44A 2GJED 3MTVA 4BF3A 4BODA 3OBHA 2GIDA 2GIAA 5FGPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GID B;  2GJE A;  2GIA B;  2GJE D;  2GID A;  2GIA A; 
#chains in the Genus database with same CATH topology
 3N1K A;  3R9Y A;  2GJE A;  3CM1 A;  4BOB A;  3N1H A;  4AGH A;  3N1I A;  4BOD A;  4BG7 A;  2GID A;  2M4F A;  2C62 A;  2GIA B;  3RA0 A;  2IT9 A;  3MTV A;  2GJE D;  2PHE A;  4USG A;  2NVN A;  1PCF A;  3N1L A;  2GID B;  1L3A A;  3OBH A;  4KOO A;  3R9Z A;  4BXM A;  4J38 A;  4KOP A;  3N1J A;  4KOQ A;  3K44 A;  4BF3 A;  4BHM A;  2GIA A;  5FGP A; 
#chains in the Genus database with same CATH homology
 4BXM A;  4J38 A;  2M4F A;  2GID B;  2GJE A;  2GIA B;  3CM1 A;  4BOB A;  3K44 A;  2GJE D;  3MTV A;  4BF3 A;  4BOD A;  3OBH A;  2GID A;  2GIA A;  5FGP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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