2GJMA

Crystal structure of buffalo lactoperoxidase at 2.75a resolution
Total Genus 188
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
188
sequence length
583
structure length
583
Chain Sequence
VKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSLAREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPPYQGYNNSVDPRISNVFTFAFRFGHMEVPSTVSRLDENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLTRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKFSFSRLICDNTHITKVPLHAFQANNYPHDFVDCSTVDKLDLSPWASREN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Lactoperoxidase
publication title Crystal structure of Buffalo lactoperoxidase at 2.75A resolution
rcsb
total genus 188
structure length 583
sequence length 583
ec nomenclature ec 1.11.1.7: Peroxidase.
pdb deposition date 2006-03-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03098 An_peroxidase Animal haem peroxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.640.10 Mainly Alpha Orthogonal Bundle Myeloperoxidase, subunit C Haem peroxidase domain superfamily, animal type 2gjmA00
3QMOA 4FM5A 3F9PC 5IKRA 1PXXA 4OEKA 1PGEA 3N8YA 2QRBA 3ZS0C 5HPWA 1PTHA 3FAQA 3GCKA 3KK6A 3V6QA 1Q4GA 1PRHA 2Z5ZA 2QPKA 3OLUA 4GN6A 3SXVA 4RRXA 2O86A 1EQHA 2QQTA 3N8WB 3N8ZA 2OJVA 2OYUP 1D7WC 1CX2A 3ERIA 3RR3A 5JVZA 4KVJA 4RS0A 3KRKA 4KVKA 3BXIA 4M11A 4LJJA 1EQGA 2EFBA 3QL6A 5F1AA 4Y55A 1D5LC 4COXA 3N8VA 3N8FA 4GM7A 2E9EA 3QF1A 4OTYA 4NJBA 4RUTA 1EBVA 5FDQA 2PUMA 2GJMA 4MSFA 5IKTA 3PY4A 3R5QA 4DL1C 3Q9KA 4PH9A 4Z0LA 4O1ZA 2PT3A 1DNWC 3R4XA 4RRZA 1MYPC 3NAKA 3NTBA 3NYHA 3NTGA 2OYEP 5IKQA 3N8YB 1HT8A 5FF1A 5GH0A 1HT5A 1FE2A 3R55A 1U67A 3UBAA 3OGWA 4KVLA 5COXA 3GCJA 3PGHA 4E1GA 1D2VC 3ERHA 3HS6A 4IG5A 2AYLA 4OTJA 1DIYA 3ZS1C 6COXA 3QH0A 5JVYA 1CQEA 4M10A 5GLSA 4RRWA 4QJQA 3KRQA 2IPSA 3RKEA 2EHAA 3S4FA 5FIWC 5B72A 3N8WA 1CXPC 3NT1A 3OLTA 4NT3A 4PNXA 5F19A 5IKVA 4HHRA 2IKCA 1CVUA 3N8XA 5JW1A 4RRYA 1DDXA 3MQEA 2R5LA 3MDLA 3Q7DA 3TZIA 3HS7A 3LN1A 4HHSA 1IGZA 3R5OA 3TGYA 3HS5A 1IGXA 1MHLC 3NIUA 3GC1A 4KSZA 5KIRA 3FNLA 3LN0A 3I6NA 3GCLA 4N7AA 4C1MC 4QYQA 1DNUC 2NQXA
chains in the Genus database with same CATH superfamily
3QMOA 4FM5A 3F9PC 5IKRA 1PXXA 4OEKA 1PGEA 3N8YA 2QRBA 3ZS0C 5HPWA 1PTHA 3FAQA 3GCKA 3KK6A 3V6QA 1Q4GA 1PRHA 2Z5ZA 2QPKA 3OLUA 4GN6A 3SXVA 4RRXA 2O86A 1EQHA 2QQTA 3N8WB 3N8ZA 2OJVA 2OYUP 1D7WC 1CX2A 3ERIA 3RR3A 5JVZA 4KVJA 4RS0A 3KRKA 4KVKA 3BXIA 4M11A 4LJJA 1EQGA 2EFBA 3QL6A 5F1AA 4Y55A 1D5LC 4COXA 3N8VA 3N8FA 4GM7A 2E9EA 3QF1A 4OTYA 4NJBA 4RUTA 1EBVA 5FDQA 2PUMA 2GJMA 4MSFA 5IKTA 3PY4A 3R5QA 4DL1C 3Q9KA 4PH9A 4Z0LA 4O1ZA 2PT3A 1DNWC 3R4XA 4RRZA 1MYPC 3NAKA 3NTBA 3NYHA 3NTGA 2OYEP 5IKQA 3N8YB 1HT8A 5FF1A 5GH0A 1HT5A 1FE2A 3R55A 1U67A 3UBAA 3OGWA 4KVLA 5COXA 3GCJA 3PGHA 4E1GA 1D2VC 3ERHA 3HS6A 4IG5A 2AYLA 4OTJA 1DIYA 3ZS1C 6COXA 3QH0A 5JVYA 1CQEA 4M10A 5GLSA 4RRWA 4QJQA 3KRQA 2IPSA 3RKEA 2EHAA 3S4FA 5FIWC 5B72A 3N8WA 1CXPC 3NT1A 3OLTA 4NT3A 4PNXA 5F19A 5IKVA 4HHRA 2IKCA 1CVUA 3N8XA 5JW1A 4RRYA 1DDXA 3MQEA 2R5LA 3MDLA 3Q7DA 3TZIA 3HS7A 3LN1A 4HHSA 1IGZA 3R5OA 3TGYA 3HS5A 1IGXA 1MHLC 3NIUA 3GC1A 4KSZA 5KIRA 3FNLA 3LN0A 3I6NA 3GCLA 4N7AA 4C1MC 4QYQA 1DNUC 2NQXA
chains in the Genus database with same CATH topology
3QMOA 4FM5A 3F9PC 5IKRA 1PXXA 4OEKA 1PGEA 3N8YA 2QRBA 3ZS0C 5HPWA 1PTHA 3FAQA 3GCKA 3KK6A 3V6QA 1Q4GA 1PRHA 2Z5ZA 2QPKA 3OLUA 4GN6A 3SXVA 4RRXA 2O86A 1EQHA 2QQTA 3N8WB 3N8ZA 2OJVA 2OYUP 1D7WC 1CX2A 3ERIA 3RR3A 5JVZA 4KVJA 4RS0A 3KRKA 4KVKA 3BXIA 4M11A 4LJJA 1EQGA 2EFBA 3QL6A 5F1AA 4Y55A 1D5LC 4COXA 3N8VA 3N8FA 4GM7A 2E9EA 3QF1A 4OTYA 4NJBA 4RUTA 1EBVA 5FDQA 2PUMA 2GJMA 4MSFA 5IKTA 3PY4A 3R5QA 4DL1C 3Q9KA 4PH9A 4Z0LA 4O1ZA 2PT3A 1DNWC 3R4XA 4RRZA 1MYPC 3NAKA 3NTBA 3NYHA 3NTGA 2OYEP 5IKQA 3N8YB 1HT8A 5FF1A 5GH0A 1HT5A 1FE2A 3R55A 1U67A 3UBAA 3OGWA 4KVLA 5COXA 3GCJA 3PGHA 4E1GA 1D2VC 3ERHA 3HS6A 4IG5A 2AYLA 4OTJA 1DIYA 3ZS1C 6COXA 3QH0A 5JVYA 1CQEA 4M10A 5GLSA 4RRWA 4QJQA 3KRQA 2IPSA 3RKEA 2EHAA 3S4FA 5FIWC 5B72A 3N8WA 1CXPC 3NT1A 3OLTA 4NT3A 4PNXA 5F19A 5IKVA 4HHRA 2IKCA 1CVUA 3N8XA 5JW1A 4RRYA 1DDXA 3MQEA 2R5LA 3MDLA 3Q7DA 3TZIA 3HS7A 3LN1A 4HHSA 1IGZA 3R5OA 3TGYA 3HS5A 1IGXA 1MHLC 3NIUA 3GC1A 4KSZA 5KIRA 3FNLA 3LN0A 3I6NA 3GCLA 4N7AA 4C1MC 4QYQA 1DNUC 2NQXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QMO A;  4FM5 A;  3F9P C;  5IKR A;  1PXX A;  4OEK A;  1PGE A;  3N8Y A;  2QRB A;  3ZS0 C;  5HPW A;  1PTH A;  3FAQ A;  3GCK A;  3KK6 A;  3V6Q A;  1Q4G A;  1PRH A;  2Z5Z A;  2QPK A;  3OLU A;  4GN6 A;  3SXV A;  4RRX A;  2O86 A;  1EQH A;  2QQT A;  3N8W B;  3N8Z A;  2OJV A;  2OYU P;  1D7W C;  1CX2 A;  3ERI A;  3RR3 A;  5JVZ A;  4KVJ A;  4RS0 A;  3KRK A;  4KVK A;  3BXI A;  4M11 A;  4LJJ A;  1EQG A;  2EFB A;  3QL6 A;  5F1A A;  4Y55 A;  1D5L C;  4COX A;  3N8V A;  3N8F A;  4GM7 A;  2E9E A;  3QF1 A;  4OTY A;  4NJB A;  4RUT A;  1EBV A;  5FDQ A;  2PUM A;  2GJM A;  4MSF A;  5IKT A;  3PY4 A;  3R5Q A;  4DL1 C;  3Q9K A;  4PH9 A;  4Z0L A;  4O1Z A;  2PT3 A;  1DNW C;  3R4X A;  4RRZ A;  1MYP C;  3NAK A;  3NTB A;  3NYH A;  3NTG A;  2OYE P;  5IKQ A;  3N8Y B;  1HT8 A;  5FF1 A;  5GH0 A;  1HT5 A;  1FE2 A;  3R55 A;  1U67 A;  3UBA A;  3OGW A;  4KVL A;  5COX A;  3GCJ A;  3PGH A;  4E1G A;  1D2V C;  3ERH A;  3HS6 A;  4IG5 A;  2AYL A;  4OTJ A;  1DIY A;  3ZS1 C;  6COX A;  3QH0 A;  5JVY A;  1CQE A;  4M10 A;  5GLS A;  4RRW A;  4QJQ A;  3KRQ A;  2IPS A;  3RKE A;  2EHA A;  3S4F A;  5FIW C;  5B72 A;  3N8W A;  1CXP C;  3NT1 A;  3OLT A;  4NT3 A;  4PNX A;  5F19 A;  5IKV A;  4HHR A;  2IKC A;  1CVU A;  3N8X A;  5JW1 A;  4RRY A;  1DDX A;  3MQE A;  2R5L A;  3MDL A;  3Q7D A;  3TZI A;  3HS7 A;  3LN1 A;  4HHS A;  1IGZ A;  3R5O A;  3TGY A;  3HS5 A;  1IGX A;  1MHL C;  3NIU A;  3GC1 A;  4KSZ A;  5KIR A;  3FNL A;  3LN0 A;  3I6N A;  3GCL A;  4N7A A;  4C1M C;  4QYQ A;  1DNU C;  2NQX A; 
#chains in the Genus database with same CATH topology
 3QMO A;  4FM5 A;  3F9P C;  5IKR A;  1PXX A;  4OEK A;  1PGE A;  3N8Y A;  2QRB A;  3ZS0 C;  5HPW A;  1PTH A;  3FAQ A;  3GCK A;  3KK6 A;  3V6Q A;  1Q4G A;  1PRH A;  2Z5Z A;  2QPK A;  3OLU A;  4GN6 A;  3SXV A;  4RRX A;  2O86 A;  1EQH A;  2QQT A;  3N8W B;  3N8Z A;  2OJV A;  2OYU P;  1D7W C;  1CX2 A;  3ERI A;  3RR3 A;  5JVZ A;  4KVJ A;  4RS0 A;  3KRK A;  4KVK A;  3BXI A;  4M11 A;  4LJJ A;  1EQG A;  2EFB A;  3QL6 A;  5F1A A;  4Y55 A;  1D5L C;  4COX A;  3N8V A;  3N8F A;  4GM7 A;  2E9E A;  3QF1 A;  4OTY A;  4NJB A;  4RUT A;  1EBV A;  5FDQ A;  2PUM A;  2GJM A;  4MSF A;  5IKT A;  3PY4 A;  3R5Q A;  4DL1 C;  3Q9K A;  4PH9 A;  4Z0L A;  4O1Z A;  2PT3 A;  1DNW C;  3R4X A;  4RRZ A;  1MYP C;  3NAK A;  3NTB A;  3NYH A;  3NTG A;  2OYE P;  5IKQ A;  3N8Y B;  1HT8 A;  5FF1 A;  5GH0 A;  1HT5 A;  1FE2 A;  3R55 A;  1U67 A;  3UBA A;  3OGW A;  4KVL A;  5COX A;  3GCJ A;  3PGH A;  4E1G A;  1D2V C;  3ERH A;  3HS6 A;  4IG5 A;  2AYL A;  4OTJ A;  1DIY A;  3ZS1 C;  6COX A;  3QH0 A;  5JVY A;  1CQE A;  4M10 A;  5GLS A;  4RRW A;  4QJQ A;  3KRQ A;  2IPS A;  3RKE A;  2EHA A;  3S4F A;  5FIW C;  5B72 A;  3N8W A;  1CXP C;  3NT1 A;  3OLT A;  4NT3 A;  4PNX A;  5F19 A;  5IKV A;  4HHR A;  2IKC A;  1CVU A;  3N8X A;  5JW1 A;  4RRY A;  1DDX A;  3MQE A;  2R5L A;  3MDL A;  3Q7D A;  3TZI A;  3HS7 A;  3LN1 A;  4HHS A;  1IGZ A;  3R5O A;  3TGY A;  3HS5 A;  1IGX A;  1MHL C;  3NIU A;  3GC1 A;  4KSZ A;  5KIR A;  3FNL A;  3LN0 A;  3I6N A;  3GCL A;  4N7A A;  4C1M C;  4QYQ A;  1DNU C;  2NQX A; 
#chains in the Genus database with same CATH homology
 3QMO A;  4FM5 A;  3F9P C;  5IKR A;  1PXX A;  4OEK A;  1PGE A;  3N8Y A;  2QRB A;  3ZS0 C;  5HPW A;  1PTH A;  3FAQ A;  3GCK A;  3KK6 A;  3V6Q A;  1Q4G A;  1PRH A;  2Z5Z A;  2QPK A;  3OLU A;  4GN6 A;  3SXV A;  4RRX A;  2O86 A;  1EQH A;  2QQT A;  3N8W B;  3N8Z A;  2OJV A;  2OYU P;  1D7W C;  1CX2 A;  3ERI A;  3RR3 A;  5JVZ A;  4KVJ A;  4RS0 A;  3KRK A;  4KVK A;  3BXI A;  4M11 A;  4LJJ A;  1EQG A;  2EFB A;  3QL6 A;  5F1A A;  4Y55 A;  1D5L C;  4COX A;  3N8V A;  3N8F A;  4GM7 A;  2E9E A;  3QF1 A;  4OTY A;  4NJB A;  4RUT A;  1EBV A;  5FDQ A;  2PUM A;  2GJM A;  4MSF A;  5IKT A;  3PY4 A;  3R5Q A;  4DL1 C;  3Q9K A;  4PH9 A;  4Z0L A;  4O1Z A;  2PT3 A;  1DNW C;  3R4X A;  4RRZ A;  1MYP C;  3NAK A;  3NTB A;  3NYH A;  3NTG A;  2OYE P;  5IKQ A;  3N8Y B;  1HT8 A;  5FF1 A;  5GH0 A;  1HT5 A;  1FE2 A;  3R55 A;  1U67 A;  3UBA A;  3OGW A;  4KVL A;  5COX A;  3GCJ A;  3PGH A;  4E1G A;  1D2V C;  3ERH A;  3HS6 A;  4IG5 A;  2AYL A;  4OTJ A;  1DIY A;  3ZS1 C;  6COX A;  3QH0 A;  5JVY A;  1CQE A;  4M10 A;  5GLS A;  4RRW A;  4QJQ A;  3KRQ A;  2IPS A;  3RKE A;  2EHA A;  3S4F A;  5FIW C;  5B72 A;  3N8W A;  1CXP C;  3NT1 A;  3OLT A;  4NT3 A;  4PNX A;  5F19 A;  5IKV A;  4HHR A;  2IKC A;  1CVU A;  3N8X A;  5JW1 A;  4RRY A;  1DDX A;  3MQE A;  2R5L A;  3MDL A;  3Q7D A;  3TZI A;  3HS7 A;  3LN1 A;  4HHS A;  1IGZ A;  3R5O A;  3TGY A;  3HS5 A;  1IGX A;  1MHL C;  3NIU A;  3GC1 A;  4KSZ A;  5KIR A;  3FNL A;  3LN0 A;  3I6N A;  3GCL A;  4N7A A;  4C1M C;  4QYQ A;  1DNU C;  2NQX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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