2GJUA

Crystal structure of hypothetical protein ph1004 from pyrococcus horikoshii ot3
Total Genus 84
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
252
structure length
252
Chain Sequence
MVYVAVLANIAGNFPALTAALEKIEELKEEGYEIEKYYILGNIVGLFPYPREVIEAIKNLAKTSNVKVIRGKYDQLIAMSDPHAGDPKYIDKLEIPDHLKATLKYTWEKLGHEGREYLRDLPIYLVDKIGKNEIFGVYGSPVNPFDGEILPDQPTSYYEAIMRPVKEYEMLLVASPRYPLDAMTMYGRVVCPGSIGFPPAREHKATFALVDAETLKVKFIEVEYDKKIIEDRIKLEKLPEEVIKILYHGGKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 252aa long hypothetical protein
publication title Crystal structure of hypothetical protein PH1004 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Structural genomics, unknown function
total genus 84
structure length 252
sequence length 252
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2006-03-31
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 2gjuA00
4YKEA 2DFJA 1V73A 3PSOA 4ZVZA 4MOYA 5HPEA 1NNWA 4DT2A 1UTEA 1U32A 1HP1A 3IVDA 4TUIA 3QFOA 1W24A 3FGAC 5IOHA 3DSDA 4ORCA 3K7WC 4I5NC 3ZU0A 5JJTA 1G5BA 3CK2A 3H63A 3PSNA 2NYLC 2CV9A 4J6OA 3IVEA 4FBWA 3E7BA 4IYPC 1MF8A 1JK7A 2BCDA 4V0WA 1SU1A 3EGGA 4LU9A 2NYMC 2IE4C 5EQVA 2Q8UA 3P71C 3AUZA 2QFRA 2IAEC 2YVTA 2HYOA 3H67A 2GJUA 4I5LC 2IE3C 3EGHA 2HYPA 1KBPA 2NXFA 2A22A 4O5GA 3JYFA 2O8AA 4WWLA 2WDFA 4H2FA 3H68A 4JA7A 4UWQA 3QFKA 4XPNA 4LACC 4ZX2A 5B8IA 1S8EA 2Z1AA 4NZVA 4MP0A 4UT3B 3E7AA 1TCOA 4V0VA 5F3WA 2JOGA 4IL1A 4DHLA 2AHDA 1USHA 2BDXA 3RL3A 3QFNA 4FBQA 3GVEA 3AV0A 4TUGA 1OIEA 5JPFA 5DNYA 3RQZA 4O43A 1Z2WA 2P6BA 4H2BA 1S70A 5INBA 4F0ZA 3THOB 3V4YA 3THNA 2WDCA 2WDDA 4Q7FA 1QFCA 1WAO1 4FBKA 3DSCA 1HPUA 2QJCA 3IB8A 1S95A 4O4KA 3QFMA 3RL4A 2O8GA 1IT6A 2NPPC 4ORAA 3HVQA 1S3NA 1T71A 3C9FA 3K7VC 5J28A 4H1SA 3RL5A 3IB7A 3ZTVA 3LL8A 3C5WC 3H64A 3T1IA 2HY1A 1QHWA 2QFPA 4UT3A 5JPEA 4M0VA 1T70A 3N5UA 4OR9A 2Z72A 4FCXA 3H66A 1WARA 1S3LA 2BQ8X 4H1YP 4V0XA 2ZBMA 1AUIA 1M63A 1II7A 3H62B 4H2IA 2R17A 2WDEA 4B2OA 3H69A 4H2GA 5C1VA 1XZWA 2Z06A 5GTUA 1Z2XA 4JA9A 2KKNA 1OI8A 1S3MA 1HO5A 4HD0A 3QG5C 4KKZA 4DSYA 4LTYA 1FJMA 2USHA 4MOVA 3TGHA 1XM7A 4KBPA 4O24A 1OIDA 2XMOA 4G9JA 4ORBA 3KBPA 1UF3A 3ICFA 4UT2A 3H61A 3DW8C 3H60A
chains in the Genus database with same CATH superfamily
4YKEA 2DFJA 1V73A 3PSOA 4ZVZA 4MOYA 5HPEA 1NNWA 4DT2A 1UTEA 1U32A 1HP1A 3IVDA 4TUIA 3QFOA 1W24A 3FGAC 5IOHA 3DSDA 4ORCA 3K7WC 4I5NC 3ZU0A 5JJTA 1G5BA 3CK2A 3H63A 3PSNA 2NYLC 2CV9A 4J6OA 3FLOA 3IVEA 4FBWA 3E7BA 4IYPC 1MF8A 1JK7A 2BCDA 2YEQA 4V0WA 1SU1A 3EGGA 4LU9A 2NYMC 2IE4C 5EQVA 2Q8UA 3P71C 3AUZA 2QFRA 2IAEC 2YVTA 2HYOA 3H67A 2GJUA 4I5LC 2IE3C 3EGHA 2HYPA 1KBPA 2NXFA 2A22A 4O5GA 3JYFA 2O8AA 4WWLA 2WDFA 4H2FA 3H68A 4JA7A 4UWQA 3QFKA 4XPNA 4LACC 3E0JA 4ZX2A 1S8EA 2Z1AA 4NZVA 5B8IA 4MP0A 4UT3B 3E7AA 1TCOA 4V0VA 5F3WA 2JOGA 4IL1A 4DHLA 2AHDA 1USHA 2BDXA 3RL3A 3QFNA 4FBQA 3GVEA 3AV0A 4TUGA 1OIEA 5JPFA 5DNYA 3RQZA 4O43A 1Z2WA 2P6BA 4H2BA 1S70A 5INBA 4F0ZA 3THOB 3V4YA 3THNA 2WDCA 2WDDA 4Q7FA 1QFCA 1WAO1 4FBKA 2ZO9B 3DSCA 1HPUA 2QJCA 3IB8A 1S95A 4O4KA 3QFMA 3RL4A 2O8GA 1IT6A 2NPPC 4ORAA 3HVQA 1S3NA 1T71A 3C9FA 3K7VC 5J28A 4H1SA 3RL5A 3IB7A 3ZTVA 3LL8A 3C5WC 3H64A 3T1IA 2HY1A 1QHWA 2QFPA 4UT3A 5JPEA 4M0VA 1T70A 3N5UA 4OR9A 2Z72A 4FCXA 2DXNA 3H66A 1WARA 1S3LA 2BQ8X 4H1YP 4V0XA 2ZBMA 1AUIA 1M63A 1II7A 3H62B 4H2IA 2R17A 2WDEA 2DXLA 3H69A 4B2OA 4H2GA 5C1VA 1XZWA 2Z06A 5GTUA 1Z2XA 4JA9A 2KKNA 1OI8A 1S3MA 2ZOAA 3D03A 1HO5A 4HD0A 3QG5C 4KKZA 4DSYA 4LTYA 1FJMA 2USHA 4MOVA 3TGHA 1XM7A 4KBPA 4O24A 1OIDA 2XMOA 4G9JA 4ORBA 3KBPA 1UF3A 3ICFA 4UT2A 3H61A 3DW8C 3H60A
chains in the Genus database with same CATH topology
4YKEA 2DFJA 1V73A 3PSOA 4ZVZA 4MOYA 5HPEA 1NNWA 4DT2A 1UTEA 1U32A 1HP1A 3IVDA 4TUIA 3QFOA 1W24A 3FGAC 5IOHA 3DSDA 4ORCA 3K7WC 4I5NC 3ZU0A 5JJTA 1G5BA 3CK2A 3H63A 3PSNA 2NYLC 2CV9A 4J6OA 3FLOA 3IVEA 4FBWA 3E7BA 4IYPC 1MF8A 1JK7A 2BCDA 2YEQA 4V0WA 1SU1A 3EGGA 4LU9A 2NYMC 2IE4C 5EQVA 2Q8UA 3P71C 3AUZA 2QFRA 2IAEC 2YVTA 2HYOA 3H67A 2GJUA 4I5LC 2IE3C 3EGHA 2HYPA 1KBPA 2NXFA 2A22A 4O5GA 3JYFA 2O8AA 4WWLA 2WDFA 4H2FA 3H68A 4JA7A 4UWQA 3QFKA 4XPNA 4LACC 3E0JA 4ZX2A 1S8EA 2Z1AA 4NZVA 5B8IA 4MP0A 4UT3B 3E7AA 1TCOA 4V0VA 5F3WA 2JOGA 4IL1A 4DHLA 2AHDA 1USHA 2BDXA 3RL3A 3QFNA 4FBQA 3GVEA 3AV0A 4TUGA 1OIEA 5JPFA 5DNYA 3RQZA 4O43A 1Z2WA 2P6BA 4H2BA 1S70A 5INBA 4F0ZA 3THOB 3V4YA 3THNA 2WDCA 2WDDA 4Q7FA 1QFCA 1WAO1 4FBKA 2ZO9B 3DSCA 1HPUA 2QJCA 3IB8A 1S95A 4O4KA 3QFMA 3RL4A 2O8GA 1IT6A 2NPPC 4ORAA 3HVQA 1S3NA 1T71A 3C9FA 3K7VC 5J28A 4H1SA 3RL5A 3IB7A 3ZTVA 3LL8A 3C5WC 3H64A 3T1IA 2HY1A 1QHWA 2QFPA 4UT3A 5JPEA 4M0VA 1T70A 3N5UA 4OR9A 2Z72A 4FCXA 2DXNA 3H66A 1WARA 1S3LA 2BQ8X 4H1YP 4V0XA 2ZBMA 1AUIA 1M63A 1II7A 3H62B 4H2IA 2R17A 2WDEA 2DXLA 3H69A 4B2OA 4H2GA 5C1VA 1XZWA 2Z06A 5GTUA 1Z2XA 4JA9A 2KKNA 1OI8A 1S3MA 2ZOAA 3D03A 1HO5A 4HD0A 3QG5C 4KKZA 4DSYA 4LTYA 1FJMA 2USHA 4MOVA 3TGHA 1XM7A 4KBPA 4O24A 1OIDA 2XMOA 4G9JA 4ORBA 3KBPA 1UF3A 3ICFA 4UT2A 3H61A 3DW8C 3H60A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YKE A;  2DFJ A;  1V73 A;  3PSO A;  4ZVZ A;  4MOY A;  5HPE A;  1NNW A;  4DT2 A;  1UTE A;  1U32 A;  1HP1 A;  3IVD A;  4TUI A;  3QFO A;  1W24 A;  3FGA C;  5IOH A;  3DSD A;  4ORC A;  3K7W C;  4I5N C;  3ZU0 A;  5JJT A;  1G5B A;  3CK2 A;  3H63 A;  3PSN A;  2NYL C;  2CV9 A;  4J6O A;  3IVE A;  4FBW A;  3E7B A;  4IYP C;  1MF8 A;  1JK7 A;  2BCD A;  4V0W A;  1SU1 A;  3EGG A;  4LU9 A;  2NYM C;  2IE4 C;  5EQV A;  2Q8U A;  3P71 C;  3AUZ A;  2QFR A;  2IAE C;  2YVT A;  2HYO A;  3H67 A;  2GJU A;  4I5L C;  2IE3 C;  3EGH A;  2HYP A;  1KBP A;  2NXF A;  2A22 A;  4O5G A;  3JYF A;  2O8A A;  4WWL A;  2WDF A;  4H2F A;  3H68 A;  4JA7 A;  4UWQ A;  3QFK A;  4XPN A;  4LAC C;  4ZX2 A;  5B8I A;  1S8E A;  2Z1A A;  4NZV A;  4MP0 A;  4UT3 B;  3E7A A;  1TCO A;  4V0V A;  5F3W A;  2JOG A;  4IL1 A;  4DHL A;  2AHD A;  1USH A;  2BDX A;  3RL3 A;  3QFN A;  4FBQ A;  3GVE A;  3AV0 A;  4TUG A;  1OIE A;  5JPF A;  5DNY A;  3RQZ A;  4O43 A;  1Z2W A;  2P6B A;  4H2B A;  1S70 A;  5INB A;  4F0Z A;  3THO B;  3V4Y A;  3THN A;  2WDC A;  2WDD A;  4Q7F A;  1QFC A;  1WAO 1;  4FBK A;  3DSC A;  1HPU A;  2QJC A;  3IB8 A;  1S95 A;  4O4K A;  3QFM A;  3RL4 A;  2O8G A;  1IT6 A;  2NPP C;  4ORA A;  3HVQ A;  1S3N A;  1T71 A;  3C9F A;  3K7V C;  5J28 A;  4H1S A;  3RL5 A;  3IB7 A;  3ZTV A;  3LL8 A;  3C5W C;  3H64 A;  3T1I A;  2HY1 A;  1QHW A;  2QFP A;  4UT3 A;  5JPE A;  4M0V A;  1T70 A;  3N5U A;  4OR9 A;  2Z72 A;  4FCX A;  3H66 A;  1WAR A;  1S3L A;  2BQ8 X;  4H1Y P;  4V0X A;  2ZBM A;  1AUI A;  1M63 A;  1II7 A;  3H62 B;  4H2I A;  2R17 A;  2WDE A;  4B2O A;  3H69 A;  4H2G A;  5C1V A;  1XZW A;  2Z06 A;  5GTU A;  1Z2X A;  4JA9 A;  2KKN A;  1OI8 A;  1S3M A;  1HO5 A;  4HD0 A;  3QG5 C;  4KKZ A;  4DSY A;  4LTY A;  1FJM A;  2USH A;  4MOV A;  3TGH A;  1XM7 A;  4KBP A;  4O24 A;  1OID A;  2XMO A;  4G9J A;  4ORB A;  3KBP A;  1UF3 A;  3ICF A;  4UT2 A;  3H61 A;  3DW8 C;  3H60 A; 
#chains in the Genus database with same CATH topology
 4YKE A;  2DFJ A;  1V73 A;  3PSO A;  4ZVZ A;  4MOY A;  5HPE A;  1NNW A;  4DT2 A;  1UTE A;  1U32 A;  1HP1 A;  3IVD A;  4TUI A;  3QFO A;  1W24 A;  3FGA C;  5IOH A;  3DSD A;  4ORC A;  3K7W C;  4I5N C;  3ZU0 A;  5JJT A;  1G5B A;  3CK2 A;  3H63 A;  3PSN A;  2NYL C;  2CV9 A;  4J6O A;  3FLO A;  3IVE A;  4FBW A;  3E7B A;  4IYP C;  1MF8 A;  1JK7 A;  2BCD A;  2YEQ A;  4V0W A;  1SU1 A;  3EGG A;  4LU9 A;  2NYM C;  2IE4 C;  5EQV A;  2Q8U A;  3P71 C;  3AUZ A;  2QFR A;  2IAE C;  2YVT A;  2HYO A;  3H67 A;  2GJU A;  4I5L C;  2IE3 C;  3EGH A;  2HYP A;  1KBP A;  2NXF A;  2A22 A;  4O5G A;  3JYF A;  2O8A A;  4WWL A;  2WDF A;  4H2F A;  3H68 A;  4JA7 A;  4UWQ A;  3QFK A;  4XPN A;  4LAC C;  3E0J A;  4ZX2 A;  1S8E A;  2Z1A A;  4NZV A;  5B8I A;  4MP0 A;  4UT3 B;  3E7A A;  1TCO A;  4V0V A;  5F3W A;  2JOG A;  4IL1 A;  4DHL A;  2AHD A;  1USH A;  2BDX A;  3RL3 A;  3QFN A;  4FBQ A;  3GVE A;  3AV0 A;  4TUG A;  1OIE A;  5JPF A;  5DNY A;  3RQZ A;  4O43 A;  1Z2W A;  2P6B A;  4H2B A;  1S70 A;  5INB A;  4F0Z A;  3THO B;  3V4Y A;  3THN A;  2WDC A;  2WDD A;  4Q7F A;  1QFC A;  1WAO 1;  4FBK A;  2ZO9 B;  3DSC A;  1HPU A;  2QJC A;  3IB8 A;  1S95 A;  4O4K A;  3QFM A;  3RL4 A;  2O8G A;  1IT6 A;  2NPP C;  4ORA A;  3HVQ A;  1S3N A;  1T71 A;  3C9F A;  3K7V C;  5J28 A;  4H1S A;  3RL5 A;  3IB7 A;  3ZTV A;  3LL8 A;  3C5W C;  3H64 A;  3T1I A;  2HY1 A;  1QHW A;  2QFP A;  4UT3 A;  5JPE A;  4M0V A;  1T70 A;  3N5U A;  4OR9 A;  2Z72 A;  4FCX A;  2DXN A;  3H66 A;  1WAR A;  1S3L A;  2BQ8 X;  4H1Y P;  4V0X A;  2ZBM A;  1AUI A;  1M63 A;  1II7 A;  3H62 B;  4H2I A;  2R17 A;  2WDE A;  2DXL A;  3H69 A;  4B2O A;  4H2G A;  5C1V A;  1XZW A;  2Z06 A;  5GTU A;  1Z2X A;  4JA9 A;  2KKN A;  1OI8 A;  1S3M A;  2ZOA A;  3D03 A;  1HO5 A;  4HD0 A;  3QG5 C;  4KKZ A;  4DSY A;  4LTY A;  1FJM A;  2USH A;  4MOV A;  3TGH A;  1XM7 A;  4KBP A;  4O24 A;  1OID A;  2XMO A;  4G9J A;  4ORB A;  3KBP A;  1UF3 A;  3ICF A;  4UT2 A;  3H61 A;  3DW8 C;  3H60 A; 
#chains in the Genus database with same CATH homology
 4YKE A;  2DFJ A;  1V73 A;  3PSO A;  4ZVZ A;  4MOY A;  5HPE A;  1NNW A;  4DT2 A;  1UTE A;  1U32 A;  1HP1 A;  3IVD A;  4TUI A;  3QFO A;  1W24 A;  3FGA C;  5IOH A;  3DSD A;  4ORC A;  3K7W C;  4I5N C;  3ZU0 A;  5JJT A;  1G5B A;  3CK2 A;  3H63 A;  3PSN A;  2NYL C;  2CV9 A;  4J6O A;  3FLO A;  3IVE A;  4FBW A;  3E7B A;  4IYP C;  1MF8 A;  1JK7 A;  2BCD A;  2YEQ A;  4V0W A;  1SU1 A;  3EGG A;  4LU9 A;  2NYM C;  2IE4 C;  5EQV A;  2Q8U A;  3P71 C;  3AUZ A;  2QFR A;  2IAE C;  2YVT A;  2HYO A;  3H67 A;  2GJU A;  4I5L C;  2IE3 C;  3EGH A;  2HYP A;  1KBP A;  2NXF A;  2A22 A;  4O5G A;  3JYF A;  2O8A A;  4WWL A;  2WDF A;  4H2F A;  3H68 A;  4JA7 A;  4UWQ A;  3QFK A;  4XPN A;  4LAC C;  3E0J A;  4ZX2 A;  1S8E A;  2Z1A A;  4NZV A;  5B8I A;  4MP0 A;  4UT3 B;  3E7A A;  1TCO A;  4V0V A;  5F3W A;  2JOG A;  4IL1 A;  4DHL A;  2AHD A;  1USH A;  2BDX A;  3RL3 A;  3QFN A;  4FBQ A;  3GVE A;  3AV0 A;  4TUG A;  1OIE A;  5JPF A;  5DNY A;  3RQZ A;  4O43 A;  1Z2W A;  2P6B A;  4H2B A;  1S70 A;  5INB A;  4F0Z A;  3THO B;  3V4Y A;  3THN A;  2WDC A;  2WDD A;  4Q7F A;  1QFC A;  1WAO 1;  4FBK A;  2ZO9 B;  3DSC A;  1HPU A;  2QJC A;  3IB8 A;  1S95 A;  4O4K A;  3QFM A;  3RL4 A;  2O8G A;  1IT6 A;  2NPP C;  4ORA A;  3HVQ A;  1S3N A;  1T71 A;  3C9F A;  3K7V C;  5J28 A;  4H1S A;  3RL5 A;  3IB7 A;  3ZTV A;  3LL8 A;  3C5W C;  3H64 A;  3T1I A;  2HY1 A;  1QHW A;  2QFP A;  4UT3 A;  5JPE A;  4M0V A;  1T70 A;  3N5U A;  4OR9 A;  2Z72 A;  4FCX A;  2DXN A;  3H66 A;  1WAR A;  1S3L A;  2BQ8 X;  4H1Y P;  4V0X A;  2ZBM A;  1AUI A;  1M63 A;  1II7 A;  3H62 B;  4H2I A;  2R17 A;  2WDE A;  2DXL A;  3H69 A;  4B2O A;  4H2G A;  5C1V A;  1XZW A;  2Z06 A;  5GTU A;  1Z2X A;  4JA9 A;  2KKN A;  1OI8 A;  1S3M A;  2ZOA A;  3D03 A;  1HO5 A;  4HD0 A;  3QG5 C;  4KKZ A;  4DSY A;  4LTY A;  1FJM A;  2USH A;  4MOV A;  3TGH A;  1XM7 A;  4KBP A;  4O24 A;  1OID A;  2XMO A;  4G9J A;  4ORB A;  3KBP A;  1UF3 A;  3ICF A;  4UT2 A;  3H61 A;  3DW8 C;  3H60 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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