2GMYA

Crystal structure of a protein of unknown function atu0492 from agrobacterium tumefaciens, putative antioxidant defence protein ahpd
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
147
structure length
147
Chain Sequence
KTRINYAKASPEAFKAVMALENYVQSSGLEHRFIHLIKLRASIINGCAFCVDMHVKESRHDGLSEQWINLMSVWRESPVYTEQERALLGWVDAVTKIAETGAPDDAFETLRAHFSDEEIVKITVAIGAINTWNRIAVGFRSQHPVEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The crystal structure of a hypothetical protein Atu0492 from Agrobacterium tumefaciens
rcsb
molecule tags Structural genomics, unknown function
source organism Agrobacterium tumefaciens str.
molecule keywords Hypothetical protein Atu0492
total genus 61
structure length 147
sequence length 147
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2006-04-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02627 CMD Carboxymuconolactone decarboxylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 2gmyA00
1LW1A 1GU9A 2QEUA 2OYOA 2GMYA 5DIKA 3LVYA 2PFXA 1P8CA 2AF7A 2Q0TA 2CWQA 2IJCA 1VKEA 2O4DA 3D7IA 2OUWA 1ME5A 2PRRA 4G9QA 3C1LA 3BEYA 1KNCA 5DIPA
chains in the Genus database with same CATH superfamily
4AKRA 1LW1A 1GU9A 2QEUA 2OYOA 1IZNA 2ES9A 3LK2A 2GMYA 5DIKA 3AAAA 3LVYA 2PFXA 3LK3A 1P8CA 3LK41 2AF7A 5AFUK 2KXPA 2Q0TA 3AA6A 2CWQA 2IJCA 1VKEA 2O4DA 3D7IA 2OUWA 1ME5A 3AA1A 3AA7A 5ADXK 2JN8A 2PRRA 3AAEA 4G9QA 3C1LA 2KZ7A 3BEYA 1KNCA 3AA0A 5DIPA
chains in the Genus database with same CATH topology
4AKRA 1LW1A 1GU9A 2QEUA 2OYOA 1IZNA 2ES9A 3LK2A 2GMYA 5DIKA 3AAAA 3LVYA 2PFXA 3LK3A 1P8CA 3LK41 2AF7A 5AFUK 2KXPA 2Q0TA 3AA6A 2CWQA 2IJCA 1VKEA 2O4DA 3D7IA 2OUWA 1ME5A 3AA1A 3AA7A 5ADXK 2JN8A 2PRRA 3AAEA 4G9QA 3C1LA 2KZ7A 3BEYA 1KNCA 3AA0A 5DIPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LW1 A;  1GU9 A;  2QEU A;  2OYO A;  2GMY A;  5DIK A;  3LVY A;  2PFX A;  1P8C A;  2AF7 A;  2Q0T A;  2CWQ A;  2IJC A;  1VKE A;  2O4D A;  3D7I A;  2OUW A;  1ME5 A;  2PRR A;  4G9Q A;  3C1L A;  3BEY A;  1KNC A;  5DIP A; 
#chains in the Genus database with same CATH topology
 4AKR A;  1LW1 A;  1GU9 A;  2QEU A;  2OYO A;  1IZN A;  2ES9 A;  3LK2 A;  2GMY A;  5DIK A;  3AAA A;  3LVY A;  2PFX A;  3LK3 A;  1P8C A;  3LK4 1;  2AF7 A;  5AFU K;  2KXP A;  2Q0T A;  3AA6 A;  2CWQ A;  2IJC A;  1VKE A;  2O4D A;  3D7I A;  2OUW A;  1ME5 A;  3AA1 A;  3AA7 A;  5ADX K;  2JN8 A;  2PRR A;  3AAE A;  4G9Q A;  3C1L A;  2KZ7 A;  3BEY A;  1KNC A;  3AA0 A;  5DIP A; 
#chains in the Genus database with same CATH homology
 4AKR A;  1LW1 A;  1GU9 A;  2QEU A;  2OYO A;  1IZN A;  2ES9 A;  3LK2 A;  2GMY A;  5DIK A;  3AAA A;  3LVY A;  2PFX A;  3LK3 A;  1P8C A;  3LK4 1;  2AF7 A;  5AFU K;  2KXP A;  2Q0T A;  3AA6 A;  2CWQ A;  2IJC A;  1VKE A;  2O4D A;  3D7I A;  2OUW A;  1ME5 A;  3AA1 A;  3AA7 A;  5ADX K;  2JN8 A;  2PRR A;  3AAE A;  4G9Q A;  3C1L A;  2KZ7 A;  3BEY A;  1KNC A;  3AA0 A;  5DIP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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