2GMYA

Crystal structure of a protein of unknown function atu0492 from agrobacterium tumefaciens, putative antioxidant defence protein ahpd
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
147
structure length
147
Chain Sequence
b'KTRINYAKASPEAFKAVMALENYVQSSGLEHRFIHLIKLRASIINGCAFCVDMHVKESRHDGLSEQWINLMSVWRESPVYTEQERALLGWVDAVTKIAETGAPDDAFETLRAHFSDEEIVKITVAIGAINTWNRIAVGFRSQHPVEA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Hypothetical protein Atu0492
publication title The crystal structure of a hypothetical protein Atu0492 from Agrobacterium tumefaciens
rcsb
source organism Agrobacterium tumefaciens str.
molecule tags Structural genomics, unknown function
total genus 61
structure length 147
sequence length 147
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2006-04-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02627 CMD Carboxymuconolactone decarboxylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 2gmyA00
2GMYA 2IJCA 1ME5A 3C1LA 1P8CA 2PRRA 2QEUA 3BEYA 5DIKA 2Q0TA 3D7IA 2PFXA 5DIPA 1VKEA 1LW1A 1KNCA 4G9QA 3LVYA 2CWQA 1GU9A 2AF7A 2OYOA 2O4DA 2OUWA
chains in the Genus database with same CATH superfamily
2GMYA 2IJCA 1ME5A 3C1LA 1P8CA 3AA6A 2ES9A 2PRRA 1IZNA 2QEUA 3BEYA 5DIKA 4AKRA 5ADXK 2Q0TA 3D7IA 2PFXA 2KZ7A 3LK41 5DIPA 1VKEA 1LW1A 1KNCA 4G9QA 3LVYA 2CWQA 2JN8A 3AA7A 1GU9A 2AF7A 2OYOA 3LK3A 3AAEA 5AFUK 3AAAA 2O4DA 3LK2A 2KXPA 2OUWA 3AA1A 3AA0A
chains in the Genus database with same CATH topology
2GMYA 2IJCA 1ME5A 3C1LA 1P8CA 3AA6A 2ES9A 2PRRA 1IZNA 2QEUA 3BEYA 5DIKA 4AKRA 5ADXK 2Q0TA 3D7IA 2PFXA 2KZ7A 3LK41 5DIPA 1VKEA 1LW1A 1KNCA 4G9QA 3LVYA 2CWQA 2JN8A 3AA7A 1GU9A 2AF7A 2OYOA 3LK3A 3AAEA 5AFUK 3AAAA 2O4DA 3LK2A 2KXPA 2OUWA 3AA1A 3AA0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GMY A;  2IJC A;  1ME5 A;  3C1L A;  1P8C A;  2PRR A;  2QEU A;  3BEY A;  5DIK A;  2Q0T A;  3D7I A;  2PFX A;  5DIP A;  1VKE A;  1LW1 A;  1KNC A;  4G9Q A;  3LVY A;  2CWQ A;  1GU9 A;  2AF7 A;  2OYO A;  2O4D A;  2OUW A; 
#chains in the Genus database with same CATH topology
 2GMY A;  2IJC A;  1ME5 A;  3C1L A;  1P8C A;  3AA6 A;  2ES9 A;  2PRR A;  1IZN A;  2QEU A;  3BEY A;  5DIK A;  4AKR A;  5ADX K;  2Q0T A;  3D7I A;  2PFX A;  2KZ7 A;  3LK4 1;  5DIP A;  1VKE A;  1LW1 A;  1KNC A;  4G9Q A;  3LVY A;  2CWQ A;  2JN8 A;  3AA7 A;  1GU9 A;  2AF7 A;  2OYO A;  3LK3 A;  3AAE A;  5AFU K;  3AAA A;  2O4D A;  3LK2 A;  2KXP A;  2OUW A;  3AA1 A;  3AA0 A; 
#chains in the Genus database with same CATH homology
 2GMY A;  2IJC A;  1ME5 A;  3C1L A;  1P8C A;  3AA6 A;  2ES9 A;  2PRR A;  1IZN A;  2QEU A;  3BEY A;  5DIK A;  4AKR A;  5ADX K;  2Q0T A;  3D7I A;  2PFX A;  2KZ7 A;  3LK4 1;  5DIP A;  1VKE A;  1LW1 A;  1KNC A;  4G9Q A;  3LVY A;  2CWQ A;  2JN8 A;  3AA7 A;  1GU9 A;  2AF7 A;  2OYO A;  3LK3 A;  3AAE A;  5AFU K;  3AAA A;  2O4D A;  3LK2 A;  2KXP A;  2OUW A;  3AA1 A;  3AA0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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