2GPIA

Crystal structure of a protein of unknown function from duf1488 family (shew_3726) from shewanella loihica pv-4 at 1.60 a resolution
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
91
structure length
91
Chain Sequence
GMNQSIIFTEQLTWDVQLSAIHFTAQQQGMVIDCYIGQKVLEHLAAEKINNSEQALSLFEQFRFDIEEQAEKLIEQEAFDVQGHIQVERVD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords conserved hypothetical protein
publication title Crystal structure of conserved hypothetical protein (ZP_00837230.1) from Shewanella sp. PV-4 at 1.60 A resolution
rcsb
source organism Shewanella loihica
total genus 24
structure length 91
sequence length 91
ec nomenclature
pdb deposition date 2006-04-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07369 DUF1488 Protein of unknown function (DUF1488)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.140 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Shew3726-like 2gpiA00
2GPIA
chains in the Genus database with same CATH superfamily
2LTSA 1N36E 2VF1A 2EN7A 5DNYA 5IT9C 1PJTA 1KJKA 3BIDA 1UHZA 1T39A 4I8OA 3HQ1A 2BB8A 1HNZE 2V87A 3MHSC 2UXBE 1EKZA 3VK6A 2WZOA 2HC5A 1ZU1A 4R2RA 2EWLA 2EMBA 2YTJA 2VRDA 4DR2E 4RHBB 2JWOA 3QG5C 1JK2A 5IWAE 1DQ3A 1NEIA 1PDAA 2GPIA 2R1FA 2RPCA 2V88A 3P1XA 2EE8A 2LBSB 2EOFA 2V85A 3ZOQB 1UILA 2CPNA 2LMZA 3HXLA 4L8NA 4LF9E 2MC5A 2UXDE 3RMPA 2EOJA 4IS1C 3KZYA 4R2PA 2UUCE 3AV0A 4ZYHA 2EQ1A 3IWBA 4JYAE 1N34E 4JI0E 2NUEA 2KOUA 2EOYA 1SR9A 1P47A 1AAYA 5A6JA 2G7HA 1IBLE 2ELYA 4NXNE 2EJ4A 4OX9E 2JP9A 4DUZE 2CSHA 4JI3E 1X47A 3IWDA 2EPNA 4OOGC 4LF8E 1FJGE 2ELZA 4JI8E 2EMLA 3MSWA 1STUA 4DV0E 1WHQA 5KL3A 3M99B 2YTQA 4WSPA 4LU9A 3ECRA 1ZBTA 2B7VA 2YTNA 5A69A 1BBOA 4HEIA 4DV5E 4R03A 3T1HE 4P78A 4MLVA 1MEYC 4F54A 2JOBA 1BBGA 5KL6A 2EOSA 5KL5A 4M9VC 2EPRA 5AC4A 4GKKE 1T4OA 2EM4A 2EN2A 4F2JC 1HNWE 2DLKA 2L3JA 3J80C 2HHHE 2UXCE 2E72A 1X48A 2EPXA 3OMLA 3JAMC 4ZYDA 5IXMB 2EM2A 1X6FA 2JYAA 4AQYE 4LF7E 2EM9A 2EMYA 2RSIA 5A6KA 4MLQA 2EQ3A 4DUYE 2GHFA 4NHRA 2HJJA 1YZ9A 1A1IA 2EN1A 3TQMA 2UUBE 2Q8UA 1GQEA 2LO3A 4R2AA 1RQ0A 2EMHA 4X65E 4B3ME 2WBTA 4DV3E 1J26A 4KHPE 2L6MA 2UU9E 4DR3E 4WYQB 3F6GA 5TSEA 2B3TB 4DKKA 5FLXC 4F6NA 2WCC3 2EOIA 2V89A 2LRSA 5KL4A 3J7Yp 2WBUA 4KWYA 2DRPA 4WSGA 5AC5A 1X6HA 2EM8A 2YT4A 4L5NC 5ADZA 1ZAAC 2EMXA 4WFTA 2B7TA 4WXCA 4DV6E 1EH8A 2M4IA 2A25A 2UUAE 2L2MA 2RS6A 1XMOE 2DGCA 4DR6E 2ENAA 4BBYA 1UN6B 2M9AA 3MHHC 4ZYGA 2YTOA 4DR7E 2YTEA 1DGCA 2YTDA 1A1KA 1LLMC 3HPSA 4M2ZA 2LTRA 2LJUA 4R2QA 2JXPA 2ZM6E 3F6HA 3ADLA 1G2FC 2YU5A 1G2DC 1F2IG 2EMGA 2YU8A 3J81C 1FKAE 4NZVA 2LUQA 4R2DA 2EN3A 2PRTA 2ODRC 4R2SA 2RSMA 4DV4E 2YSOA 2EMIA 2M7QA 2L92A 2J7JA 3THOB 3DJWA 1XMQE 2EOOA 3C4TA 1SFEA 3THNA 2EPMX 2EMAA 1PKPA 2YRHA 4F9BB 4WX9A 4JI1E 4TUGA 5AE3A 5LL6R 2DIXA 1IBKE 2EL6A 1YUIA 2JVAA 1J5EE 3UK3C 5A6BD 2I13A 1HNXE 3EPHA 1ZR9A 4JI6E 1ZBQA 2MC6A 2K7IA 3C6KA 3KWRA 5A6AA 2EP3A 2D9HA 4B3TE 3K6QA 4DV1E 2L2NA 1IQSA 4O24A 3LMLA 1A1GA 4R2CA 1O0WA 2EL5A 2EN4A 2V86A 3VYXA 1L4SA 2HGHA 1WRJA 4BHCA 3VYYA 4LFCE 2LJHA 2EPOA 2EPZA 1X6EA 4DR4E 1RC7A 2LCEA 3C6MA 1PJQA 4LF6E 4LFBE 3JU0A 1AH5A 2EOXA 3DF6A 1KYQA 4BCAA 1NCSA 3EPJA 1EH7A 4X62E 2YRMA 5AASA 1QU6A 2LV2A 2RS7A 4X64E 2L8TA 4R2EA 4Q35B 1Z1BA 3EQ1A 2N8XA 5KL7A 4ZYEA 2E1MA 2VQEE 2ENHA 4BMJA 3HPZA 2EORA 2JR1A 3H09A 2EPUA 4DMIA 1GZ6A 2VQFE 2EM5A 1XNQE 2WBSA 4JI2E 2YTPA 2EMFA 2EMCA 2RQLA 3BF2A 4IJDA 2VE7C 2NA2A 2EN8A 1WJPA 4X8WA 4JV5E 5T6JA 2EPPA 3VHTB 5F3WA 2YWQA 4F9CB 1B69A 1BB8A 2L33A 4M30A 4BC9A 4X9JA 2EN6A 2F4VE 2YPNA 2KHXA 4GKJE 1TN9A 4JI7E 2LT7A 1WXRA 2EPKX 1UBDC 2EM6A 2E5LE 2YTIA 3AUZA 1JK1A 3L00A 2N3GA 4B3SE 2RTXA 2ENCA 2KONA 3BGHA 4TUIA 3EPLA 1N33E 2YRKA 1EH6A 2EZ6A 1TF3A 2EOHA 1TF6A 2M1SA 1A1LA 3ADGA 4P7DA 2MDGA 2NUFA 2EM7A 4NXME 4F6MA 2N3HA 1WHNA 3LLHA 3OTOE 2R76A 1HR0E 4LTYA 5LLQA 1YPNA 2DLQA 2K4VA 2EM3A 5A6BA 2NUGA 1T38A 1YSAC 2ODRD 3FIGA 4YHHE 4JI4E 2EOMA 3T1YE 5CFFE 2EPLX 4LF4E 2EOQA 2JOXA 1YUJA 4WXDA 4RH8A 4N4RB 4M0VA 1T4NA 1GTKA 2B9DA 3HTXA 1IQOA 5A2QC 2DMYA 2F8BA 4R8OA 4DV7E 2EL4A 2I9IA 4LFAE 2V8QB 2EM0A 1A1HA 5AE1A 2YTFA 1IBME 1PJSA 4KZSA 1YFHA 3C4BA 2ADRA 4YY3E 5BR8E 5AE2A 4DR5E 2EOEA 2NABA 5KL2A 4JI5E 2L2KB 4Q28A 2GLIA 4HTGA 5LMUE 1DI2A 1X49A 1QNTA 4F9AB 2IHR1 2BBGA 2MKNA 2V83A 1N32E 4O5GA 4GEQB 2MKDA 2EQ0A 3JTZA 2YSPA 1YYKA 1YYWA 2DB2A 5IV8B 1IMUA 1A1FA 2JY9A 1A1JA 2JPAA 3BBGA 4BC7A 2CT1A 2EPCA 4K0KE 2FTXB 4DR1E 1MGTA 4O4KA 2FGGA 2EPAA 4DV2E 2DSYA 2LE2A 3J7AG 1X3CA 4O43A 2YTGA 1YYOA 2CTDA 3ADJA 3ADIA 1N3GA 2DMIA 1I94E 4BHBA 2EMZA 4BS9A 1X5WA 1T4LB 2EMWA 4LF5E 2H36X 2MDRA 4X66E 2L3CA 3IWCA 1RMDA 4FK5C 4J8ZA 2LVHA 2YZTA 1XNRE 5LMNE 4B3RE 3KZZA 2FV4B 4WPYA 2EOZA 4GZNC 2LUPB 2EMKA 3EPKA
chains in the Genus database with same CATH topology
2GPIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GPI A; 
#chains in the Genus database with same CATH topology
 2LTS A;  1N36 E;  2VF1 A;  2EN7 A;  5DNY A;  5IT9 C;  1PJT A;  1KJK A;  3BID A;  1UHZ A;  1T39 A;  4I8O A;  3HQ1 A;  2BB8 A;  1HNZ E;  2V87 A;  3MHS C;  2UXB E;  1EKZ A;  3VK6 A;  2WZO A;  2HC5 A;  1ZU1 A;  4R2R A;  2EWL A;  2EMB A;  2YTJ A;  2VRD A;  4DR2 E;  4RHB B;  2JWO A;  3QG5 C;  1JK2 A;  5IWA E;  1DQ3 A;  1NEI A;  1PDA A;  2GPI A;  2R1F A;  2RPC A;  2V88 A;  3P1X A;  2EE8 A;  2LBS B;  2EOF A;  2V85 A;  3ZOQ B;  1UIL A;  2CPN A;  2LMZ A;  3HXL A;  4L8N A;  4LF9 E;  2MC5 A;  2UXD E;  3RMP A;  2EOJ A;  4IS1 C;  3KZY A;  4R2P A;  2UUC E;  3AV0 A;  4ZYH A;  2EQ1 A;  3IWB A;  4JYA E;  1N34 E;  4JI0 E;  2NUE A;  2KOU A;  2EOY A;  1SR9 A;  1P47 A;  1AAY A;  5A6J A;  2G7H A;  1IBL E;  2ELY A;  4NXN E;  2EJ4 A;  4OX9 E;  2JP9 A;  4DUZ E;  2CSH A;  4JI3 E;  1X47 A;  3IWD A;  2EPN A;  4OOG C;  4LF8 E;  1FJG E;  2ELZ A;  4JI8 E;  2EML A;  3MSW A;  1STU A;  4DV0 E;  1WHQ A;  5KL3 A;  3M99 B;  2YTQ A;  4WSP A;  4LU9 A;  3ECR A;  1ZBT A;  2B7V A;  2YTN A;  5A69 A;  1BBO A;  4HEI A;  4DV5 E;  4R03 A;  3T1H E;  4P78 A;  4MLV A;  1MEY C;  4F54 A;  2JOB A;  1BBG A;  5KL6 A;  2EOS A;  5KL5 A;  4M9V C;  2EPR A;  5AC4 A;  4GKK E;  1T4O A;  2EM4 A;  2EN2 A;  4F2J C;  1HNW E;  2DLK A;  2L3J A;  3J80 C;  2HHH E;  2UXC E;  2E72 A;  1X48 A;  2EPX A;  3OML A;  3JAM C;  4ZYD A;  5IXM B;  2EM2 A;  1X6F A;  2JYA A;  4AQY E;  4LF7 E;  2EM9 A;  2EMY A;  2RSI A;  5A6K A;  4MLQ A;  2EQ3 A;  4DUY E;  2GHF A;  4NHR A;  2HJJ A;  1YZ9 A;  1A1I A;  2EN1 A;  3TQM A;  2UUB E;  2Q8U A;  1GQE A;  2LO3 A;  4R2A A;  1RQ0 A;  2EMH A;  4X65 E;  4B3M E;  2WBT A;  4DV3 E;  1J26 A;  4KHP E;  2L6M A;  2UU9 E;  4DR3 E;  4WYQ B;  3F6G A;  5TSE A;  2B3T B;  4DKK A;  5FLX C;  4F6N A;  2WCC 3;  2EOI A;  2V89 A;  2LRS A;  5KL4 A;  3J7Y p;  2WBU A;  4KWY A;  2DRP A;  4WSG A;  5AC5 A;  1X6H A;  2EM8 A;  2YT4 A;  4L5N C;  5ADZ A;  1ZAA C;  2EMX A;  4WFT A;  2B7T A;  4WXC A;  4DV6 E;  1EH8 A;  2M4I A;  2A25 A;  2UUA E;  2L2M A;  2RS6 A;  1XMO E;  2DGC A;  4DR6 E;  2ENA A;  4BBY A;  1UN6 B;  2M9A A;  3MHH C;  4ZYG A;  2YTO A;  4DR7 E;  2YTE A;  1DGC A;  2YTD A;  1A1K A;  1LLM C;  3HPS A;  4M2Z A;  2LTR A;  2LJU A;  4R2Q A;  2JXP A;  2ZM6 E;  3F6H A;  3ADL A;  1G2F C;  2YU5 A;  1G2D C;  1F2I G;  2EMG A;  2YU8 A;  3J81 C;  1FKA E;  4NZV A;  2LUQ A;  4R2D A;  2EN3 A;  2PRT A;  2ODR C;  4R2S A;  2RSM A;  4DV4 E;  2YSO A;  2EMI A;  2M7Q A;  2L92 A;  2J7J A;  3THO B;  3DJW A;  1XMQ E;  2EOO A;  3C4T A;  1SFE A;  3THN A;  2EPM X;  2EMA A;  1PKP A;  2YRH A;  4F9B B;  4WX9 A;  4JI1 E;  4TUG A;  5AE3 A;  5LL6 R;  2DIX A;  1IBK E;  2EL6 A;  1YUI A;  2JVA A;  1J5E E;  3UK3 C;  5A6B D;  2I13 A;  1HNX E;  3EPH A;  1ZR9 A;  4JI6 E;  1ZBQ A;  2MC6 A;  2K7I A;  3C6K A;  3KWR A;  5A6A A;  2EP3 A;  2D9H A;  4B3T E;  3K6Q A;  4DV1 E;  2L2N A;  1IQS A;  4O24 A;  3LML A;  1A1G A;  4R2C A;  1O0W A;  2EL5 A;  2EN4 A;  2V86 A;  3VYX A;  1L4S A;  2HGH A;  1WRJ A;  4BHC A;  3VYY A;  4LFC E;  2LJH A;  2EPO A;  2EPZ A;  1X6E A;  4DR4 E;  1RC7 A;  2LCE A;  3C6M A;  1PJQ A;  4LF6 E;  4LFB E;  3JU0 A;  1AH5 A;  2EOX A;  3DF6 A;  1KYQ A;  4BCA A;  1NCS A;  3EPJ A;  1EH7 A;  4X62 E;  2YRM A;  5AAS A;  1QU6 A;  2LV2 A;  2RS7 A;  4X64 E;  2L8T A;  4R2E A;  4Q35 B;  1Z1B A;  3EQ1 A;  2N8X A;  5KL7 A;  4ZYE A;  2E1M A;  2VQE E;  2ENH A;  4BMJ A;  3HPZ A;  2EOR A;  2JR1 A;  3H09 A;  2EPU A;  4DMI A;  1GZ6 A;  2VQF E;  2EM5 A;  1XNQ E;  2WBS A;  4JI2 E;  2YTP A;  2EMF A;  2EMC A;  2RQL A;  3BF2 A;  4IJD A;  2VE7 C;  2NA2 A;  2EN8 A;  1WJP A;  4X8W A;  4JV5 E;  5T6J A;  2EPP A;  3VHT B;  5F3W A;  2YWQ A;  4F9C B;  1B69 A;  1BB8 A;  2L33 A;  4M30 A;  4BC9 A;  4X9J A;  2EN6 A;  2F4V E;  2YPN A;  2KHX A;  4GKJ E;  1TN9 A;  4JI7 E;  2LT7 A;  1WXR A;  2EPK X;  1UBD C;  2EM6 A;  2E5L E;  2YTI A;  3AUZ A;  1JK1 A;  3L00 A;  2N3G A;  4B3S E;  2RTX A;  2ENC A;  2KON A;  3BGH A;  4TUI A;  3EPL A;  1N33 E;  2YRK A;  1EH6 A;  2EZ6 A;  1TF3 A;  2EOH A;  1TF6 A;  2M1S A;  1A1L A;  3ADG A;  4P7D A;  2MDG A;  2NUF A;  2EM7 A;  4NXM E;  4F6M A;  2N3H A;  1WHN A;  3LLH A;  3OTO E;  2R76 A;  1HR0 E;  4LTY A;  5LLQ A;  1YPN A;  2DLQ A;  2K4V A;  2EM3 A;  5A6B A;  2NUG A;  1T38 A;  1YSA C;  2ODR D;  3FIG A;  4YHH E;  4JI4 E;  2EOM A;  3T1Y E;  5CFF E;  2EPL X;  4LF4 E;  2EOQ A;  2JOX A;  1YUJ A;  4WXD A;  4RH8 A;  4N4R B;  4M0V A;  1T4N A;  1GTK A;  2B9D A;  3HTX A;  1IQO A;  5A2Q C;  2DMY A;  2F8B A;  4R8O A;  4DV7 E;  2EL4 A;  2I9I A;  4LFA E;  2V8Q B;  2EM0 A;  1A1H A;  5AE1 A;  2YTF A;  1IBM E;  1PJS A;  4KZS A;  1YFH A;  3C4B A;  2ADR A;  4YY3 E;  5BR8 E;  5AE2 A;  4DR5 E;  2EOE A;  2NAB A;  5KL2 A;  4JI5 E;  2L2K B;  4Q28 A;  2GLI A;  4HTG A;  5LMU E;  1DI2 A;  1X49 A;  1QNT A;  4F9A B;  2IHR 1;  2BBG A;  2MKN A;  2V83 A;  1N32 E;  4O5G A;  4GEQ B;  2MKD A;  2EQ0 A;  3JTZ A;  2YSP A;  1YYK A;  1YYW A;  2DB2 A;  5IV8 B;  1IMU A;  1A1F A;  2JY9 A;  1A1J A;  2JPA A;  3BBG A;  4BC7 A;  2CT1 A;  2EPC A;  4K0K E;  2FTX B;  4DR1 E;  1MGT A;  4O4K A;  2FGG A;  2EPA A;  4DV2 E;  2DSY A;  2LE2 A;  3J7A G;  1X3C A;  4O43 A;  2YTG A;  1YYO A;  2CTD A;  3ADJ A;  3ADI A;  1N3G A;  2DMI A;  1I94 E;  4BHB A;  2EMZ A;  4BS9 A;  1X5W A;  1T4L B;  2EMW A;  4LF5 E;  2H36 X;  2MDR A;  4X66 E;  2L3C A;  3IWC A;  1RMD A;  4FK5 C;  4J8Z A;  2LVH A;  2YZT A;  1XNR E;  5LMN E;  4B3R E;  3KZZ A;  2FV4 B;  4WPY A;  2EOZ A;  4GZN C;  2LUP B;  2EMK A;  3EPK A; 
#chains in the Genus database with same CATH homology
 2GPI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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