2GPRA

Glucose permease iia from mycoplasma capricolum
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
154
structure length
154
Chain Sequence
MWFFNKNLKVLAPCDGTIITLDEVEDEVFKERMLGDGFAINPKSNDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTNNGGKTLEIVKMGEVKQGDVVAILK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Phosphotransferase
molecule keywords GLUCOSE-PERMEASE IIA COMPONENT
publication title A promiscuous binding surface: crystal structure of the IIA domain of the glucose-specific permease from Mycoplasma capricolum.
pubmed doi rcsb
source organism Mycoplasma capricolum
total genus 36
structure length 154
sequence length 154
ec nomenclature ec 2.7.1.69: Transferred entry: 2.7.1.191, 2.7.1.192, 2.7.1.193, 2.7.1.194, 2.7.1.195,
pdb deposition date 1998-05-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00358 PTS_EIIA_1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.70.10 Mainly Beta Distorted Sandwich Glucose Permease (Domain IIA) Glucose Permease (Domain IIA) 2gprA00
1QWYA 2B44A 2MP0B 4QP5A 1GLCF 3TUFB 4RNYA 4ZYBA 1GLEF 2GU1A 1AX3A 4QPBA 1GGRA 1GLDF 2F3GA 5B0HA 3OURB 4BH5A 1O2FA 3IT7A 3CSQA 2B13A 2B0PA 3SLUA 5KVPA 3UZ0B 4JBWM 1F3GA 1GLBF 3NYYA 2GPRA 1F3ZA 1GPRA 3IT5A 4LXCA 2HSIA 4RNZA 1GLAF
chains in the Genus database with same CATH superfamily
1QWYA 2B44A 2MP0B 4QP5A 1GLCF 3TUFB 4RNYA 4ZYBA 1GLEF 2GU1A 1AX3A 4QPBA 1GGRA 1GLDF 2F3GA 5B0HA 3OURB 4BH5A 1O2FA 3IT7A 3CSQA 2B13A 2B0PA 3SLUA 5KVPA 3UZ0B 4JBWM 1F3GA 1GLBF 3NYYA 2GPRA 1F3ZA 1GPRA 3IT5A 4LXCA 2HSIA 4RNZA 1GLAF
chains in the Genus database with same CATH topology
1QWYA 2B44A 2MP0B 4QP5A 1GLCF 3TUFB 4RNYA 4ZYBA 1GLEF 2GU1A 1AX3A 4QPBA 1GGRA 1GLDF 2F3GA 5B0HA 3OURB 4BH5A 1O2FA 3IT7A 3CSQA 2B13A 2B0PA 3SLUA 5KVPA 3UZ0B 4JBWM 1F3GA 1GLBF 3NYYA 2GPRA 1F3ZA 1GPRA 3IT5A 4LXCA 2HSIA 4RNZA 1GLAF
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QWY A;  2B44 A;  2MP0 B;  4QP5 A;  1GLC F;  3TUF B;  4RNY A;  4ZYB A;  1GLE F;  2GU1 A;  1AX3 A;  4QPB A;  1GGR A;  1GLD F;  2F3G A;  5B0H A;  3OUR B;  4BH5 A;  1O2F A;  3IT7 A;  3CSQ A;  2B13 A;  2B0P A;  3SLU A;  5KVP A;  3UZ0 B;  4JBW M;  1F3G A;  1GLB F;  3NYY A;  2GPR A;  1F3Z A;  1GPR A;  3IT5 A;  4LXC A;  2HSI A;  4RNZ A;  1GLA F; 
#chains in the Genus database with same CATH topology
 1QWY A;  2B44 A;  2MP0 B;  4QP5 A;  1GLC F;  3TUF B;  4RNY A;  4ZYB A;  1GLE F;  2GU1 A;  1AX3 A;  4QPB A;  1GGR A;  1GLD F;  2F3G A;  5B0H A;  3OUR B;  4BH5 A;  1O2F A;  3IT7 A;  3CSQ A;  2B13 A;  2B0P A;  3SLU A;  5KVP A;  3UZ0 B;  4JBW M;  1F3G A;  1GLB F;  3NYY A;  2GPR A;  1F3Z A;  1GPR A;  3IT5 A;  4LXC A;  2HSI A;  4RNZ A;  1GLA F; 
#chains in the Genus database with same CATH homology
 1QWY A;  2B44 A;  2MP0 B;  4QP5 A;  1GLC F;  3TUF B;  4RNY A;  4ZYB A;  1GLE F;  2GU1 A;  1AX3 A;  4QPB A;  1GGR A;  1GLD F;  2F3G A;  5B0H A;  3OUR B;  4BH5 A;  1O2F A;  3IT7 A;  3CSQ A;  2B13 A;  2B0P A;  3SLU A;  5KVP A;  3UZ0 B;  4JBW M;  1F3G A;  1GLB F;  3NYY A;  2GPR A;  1F3Z A;  1GPR A;  3IT5 A;  4LXC A;  2HSI A;  4RNZ A;  1GLA F; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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