2GR8A

Hia 1022-1098
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
78
structure length
78
Chain Sequence
SKRADAGTASALAASQLPQATMPGKSMVAIAGSSYQGQNGLAIGVSRISDNGKVIIRLSGTTNSQGKTGVAAGVGYQW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Membrane protein
molecule keywords Adhesin
publication title Structure of the outer membrane translocator domain of the Haemophilus influenzae Hia trimeric autotransporter.
pubmed doi rcsb
source organism Haemophilus influenzae
total genus 19
structure length 78
sequence length 78
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2006-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03895 YadA_anchor YadA-like membrane anchor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1300.30 Alpha Beta 2-Layer Sandwich Pantoate--beta-alanine Ligase; Chain: A,domain 2 GSPII I/J protein-like 2gr8A00
2GR7A 3CI0K 2RETA 2GR8A 5BW0B 2LMEA 3EMOA 3CI0I 3CFIA
chains in the Genus database with same CATH superfamily
4DDMA 3AG6A 2RETA 3IOCA 4MUNA 1MOPA 3UK2A 4EF6A 1UFVA 2A52A 3QTTA 4FZJA 3ISJA 3UY4A 1N2HA 2A84A 3IUEA 3COVA 4G5FA 2A56A 4MUHA 3IUBA 3IMEA 4EFKA 3IVCA 2G16A 3CI0I 3Q12A 5G2FA 3AG5A 2G5ZA 3INNA 4DDHA 4MULA 2A54A 3CFHL 3CFAL 1N2BA 5HG0A 3EMOA 3IOBA 5EXCA 3COWA 2A50A 3IMGA 2G2SA 2G3DA 3CFIA 2GW4A 3Q10A 2GR8A 2A7XA 1IHOA 3LE8A 3IMCA 4G5YA 2A86A 3CI0K 3IVXA 2A53A 2OGFA 2X3FA 3UA0A 2A88A 4MUEA 3MUEA 3IOEA 3COZA 2I52A 3HL6A 1V8FA 4MUKA 3IVGA 4DE5A 1N2IA 4MUJA 3N8HA 3CFFL 4MQ6A 3IODA 3LF4A 5KWVA 1N2OA 1N2EA 4MUIA 5BW0B 2EJCA 4DDKA 4MUFA 4MUGA 2GR7A 4IXJA 3COYA 2LMEA 3MXTA 2IECA 4BHRA 1N2GA 1N2JA
chains in the Genus database with same CATH topology
2GR7A 3CI0K 2RETA 2GR8A 5BW0B 2LMEA 3EMOA 3CI0I 3CFIA 3CI0J
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GR7 A;  3CI0 K;  2RET A;  2GR8 A;  5BW0 B;  2LME A;  3EMO A;  3CI0 I;  3CFI A; 
#chains in the Genus database with same CATH topology
 4DDM A;  3AG6 A;  2RET A;  3IOC A;  4MUN A;  1MOP A;  3UK2 A;  4EF6 A;  1UFV A;  2A52 A;  3QTT A;  4FZJ A;  3ISJ A;  3UY4 A;  1N2H A;  2A84 A;  3IUE A;  3COV A;  4G5F A;  2A56 A;  4MUH A;  3IUB A;  3IME A;  4EFK A;  3IVC A;  2G16 A;  3CI0 I;  3Q12 A;  5G2F A;  3AG5 A;  2G5Z A;  3INN A;  4DDH A;  4MUL A;  2A54 A;  3CFH L;  3CFA L;  1N2B A;  5HG0 A;  3EMO A;  3IOB A;  5EXC A;  3COW A;  2A50 A;  3IMG A;  2G2S A;  2G3D A;  3CFI A;  2GW4 A;  3Q10 A;  2GR8 A;  2A7X A;  1IHO A;  3LE8 A;  3IMC A;  4G5Y A;  2A86 A;  3CI0 K;  3IVX A;  2A53 A;  2OGF A;  2X3F A;  3UA0 A;  2A88 A;  4MUE A;  3MUE A;  3IOE A;  3COZ A;  2I52 A;  3HL6 A;  1V8F A;  4MUK A;  3IVG A;  4DE5 A;  1N2I A;  4MUJ A;  3N8H A;  3CFF L;  4MQ6 A;  3IOD A;  3LF4 A;  5KWV A;  1N2O A;  1N2E A;  4MUI A;  5BW0 B;  2EJC A;  4DDK A;  4MUF A;  4MUG A;  2GR7 A;  4IXJ A;  3COY A;  2LME A;  3MXT A;  2IEC A;  4BHR A;  1N2G A;  1N2J A; 
#chains in the Genus database with same CATH homology
 2GR7 A;  3CI0 K;  2RET A;  2GR8 A;  5BW0 B;  2LME A;  3EMO A;  3CI0 I;  3CFI A;  3CI0 J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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