2GSCA

Crystal structure of the conserved hypothetical cytosolic protein xcc0516 from xanthomonas campestris
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
117
structure length
113
Chain Sequence
RPHERLDAWRDSMELVEMIYRLTEVFPDQERYGLTAQLRRAAVSIPSNIAEGAARDYSRFLSIARGSLSELDTQVQIAARLGYSRSEDDQSVRRQVDLVFAKLTALMNALRRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords Putative uncharacterized protein XCC0516
publication title Crystal structure of the conserved hypothetical cytosolic protein Xcc0516 from Xanthomonas campestris reveals a novel quaternary structure assembled by five four-helix bundles.
pubmed doi rcsb
source organism Xanthomonas campestris pv. campestris
total genus 46
structure length 113
sequence length 117
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2006-04-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05635 23S_rRNA_IVP 23S rRNA-intervening sequence protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1440.60 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) 23S rRNA-intervening sequence 2gscA00
2GSCA 2RLDA
chains in the Genus database with same CATH superfamily
2YFBA 4PL4A 4NV2A 5LNK1 1YO7A 2QSBA 3I9V1 4Q9VA 2KKMA 3DA4A 4YZDA 2FU2A 4Z7HA 3LJ1A 2BL8A 4PL3A 2A2DA 2FEFA 2ETDA 2K19A 2IP6A 3F4MA 1U5KA 3B55A 3VA9A 3JSBA 3Q8DA 3DO9A 4DWLA 4PL5A 4AS3A 3FVVA 3FBVA 3IAM1 2JB1A 2HGKA 3IAS1 1SJ8A 4OAVB 2JAEA 4G76A 2XTQA 3KP9A 4Z7GA 2V6EA 1W3SA 1JQOA 2YFAA 4GXTA 2QGMA 2BL7A 2ZW3A 4OAUC 4HEA1 4YZ9A 3FNBA 3P23A 2JBWA 3UITA 1TDPA 3LJ0A 4JCVE 2XTRA 2ZRRA 3L0IA 3AJFA 3LJ2A 4AS2A 4U6RA 2F66B 2P22B 4YZCA 2V1CC 2XMXA 4HFVA 2F6MB 2E8GA 2A2CA 2CAZB 2JB2A 2RIOA 2JB3A 3DA3A 4O1OA 2L1LB 4G75A 4NV5A 4O1PA 2GSCA 2QZGA 2MJFB 2FUG1 2RLDA 4I1TA 5HGIA 2RADA 3SDJA
chains in the Genus database with same CATH topology
2GSCA 2RLDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GSC A;  2RLD A; 
#chains in the Genus database with same CATH topology
 2YFB A;  4PL4 A;  4NV2 A;  5LNK 1;  1YO7 A;  2QSB A;  3I9V 1;  4Q9V A;  2KKM A;  3DA4 A;  4YZD A;  2FU2 A;  4Z7H A;  3LJ1 A;  2BL8 A;  4PL3 A;  2A2D A;  2FEF A;  2ETD A;  2K19 A;  2IP6 A;  3F4M A;  1U5K A;  3B55 A;  3VA9 A;  3JSB A;  3Q8D A;  3DO9 A;  4DWL A;  4PL5 A;  4AS3 A;  3FVV A;  3FBV A;  3IAM 1;  2JB1 A;  2HGK A;  3IAS 1;  1SJ8 A;  4OAV B;  2JAE A;  4G76 A;  2XTQ A;  3KP9 A;  4Z7G A;  2V6E A;  1W3S A;  1JQO A;  2YFA A;  4GXT A;  2QGM A;  2BL7 A;  2ZW3 A;  4OAU C;  4HEA 1;  4YZ9 A;  3FNB A;  3P23 A;  2JBW A;  3UIT A;  1TDP A;  3LJ0 A;  4JCV E;  2XTR A;  2ZRR A;  3L0I A;  3AJF A;  3LJ2 A;  4AS2 A;  4U6R A;  2F66 B;  2P22 B;  4YZC A;  2V1C C;  2XMX A;  4HFV A;  2F6M B;  2E8G A;  2A2C A;  2CAZ B;  2JB2 A;  2RIO A;  2JB3 A;  3DA3 A;  4O1O A;  2L1L B;  4G75 A;  4NV5 A;  4O1P A;  2GSC A;  2QZG A;  2MJF B;  2FUG 1;  2RLD A;  4I1T A;  5HGI A;  2RAD A;  3SDJ A; 
#chains in the Genus database with same CATH homology
 2GSC A;  2RLD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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