2GUTA

Solution structure of the trans-activation domain of the human co-activator arc105
Total Genus 21
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
77
structure length
77
Chain Sequence
GAMGQETDWRSTAFRQKLVSQIEDAMRKAGVAHSKSSKDMESHVFLKAKTRDEYLSLVARLIIHFRDIHNKKSQASV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transcription
molecule keywords ARC/MEDIATOR, Positive cofactor 2 glutamine/Q-rich-associate
publication title An ARC/Mediator subunit required for SREBP control of cholesterol and lipid homeostasis.
pubmed doi rcsb
source organism Homo sapiens
total genus 21
structure length 77
sequence length 77
ec nomenclature
pdb deposition date 2006-05-01
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.20 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Coactivator CBP, KIX domain 2gutA00
2KWFA 2GUTA 4D7XA 1SB0A 2LXSA 2LQIA 1KDXA 2AGHB 4I9OA 2LQHA 2LXTA 2K0NA
chains in the Genus database with same CATH superfamily
3MHHB 2KBZA 3V08A 4C31B 4OTTA 2XMOA 1BM0A 4GDLB 4JK4A 4K71A 4ZC6A 4ZBRA 3SQJA 3FWBC 2XVQA 3UIVA 4F5VA 2BXKA 1HK5A 5DQFA 2BXCA 5ID9A 3FNMA 4LUHA 3VQIA 2LXTA 5GIOA 3PLAA 1E7GA 1HA2A 2ROHA 1VFIA 4OT2A 2YDFA 3FWCC 3GQXA 4I9OA 1BJ5A 1E7CA 2XW1A 4DHXB 2OZBB 3G9KD 5IIHA 3H3AA 4IW2A 1MIWA 2BXIA 4LUFA 4E99A 4Z69A 3NMUA 2BXPA 3TDLA 2BXDA 4GDXA 5IJEA 2EFDA 2QM6A 2Z8JA 1E78A 3MHSB 4L9QA 1N5UA 1MUSA 2I2ZA 2BXEA 4GG2A 2EFCA 2NNWA 3KJLA 2BXQA 2XVVA 1SB0A 2I30A 2LQIA 4K2CA 1KW2A 2AGHB 4J2VA 4BKEA 1J7EA 2LQHA 4FJCB 4M70B 1E7IA 4Z9OA 4L8UA 4F5UA 1H5WA 1LNSA 5B5TA 2DBWA 2BXMA 2DYOA 2BXFA 1E7AA 1MIVA 2AJEA 2E0XA 4D7XA 1E7BA 1E7HA 4OTUA 3WHQA 5IIXA 1VZSA 2BXBA 4G03A 1TF0A 2QHBA 3NVKA 3V03A 3SIVB 5ID7A 5IFOA 5IIUA 2DBXA 2GUTA 1MIYA 3SIUB 1JNBA 2QMCA 1IJGA 5GHKA 1H9ZA 4LB2A 4FK5B 1TXUA 2BXOA 4MBEC 1GNIA 4NAWB 2OT3A 2VUEA 1UORA 2XW0A 2VDBA 3JRYA 3V09A 1BKEA 4N0UD 4G04A 3CX9A 1GNJA 3WHRA 4ZUXV 2BXLA 2V36A 1MM8A 1HK2A 4PO0A 2XVWA 4N3ZA 4HGKA 2JUHA 3GQUA 3LU7A 2Z8KA 4HGMB 3GA9L 3JQZA 3LU6A 4LB9A 2VUFA 1HK3A 4EMXA 2DG5A 2CKXA 1MUHA 2EFEA 2K0NA 2E0YA 4OR0A 2BX8A 2XSIA 2Z8IA 4ZCGA 4TQ0A 4WA6B 5GINA 4F5TA 2LOQA 4L9KA 2DBUA 3A75A 1NT2B 3WHSA 2BXGA 2BXNA 1O9XA 3A73A 3ICXA 4ZBKA 1AO6A 4G01A 4ZBQA 3H37A 5IJFA 3BPJA 2DYMA 3ECPA 5FUOA 4W4UB 2XVUA 2BXAA 1FOUA 4TQ1A 3W1SA 2NQOA 4FIPB 4GDKB 1KXPD 1KDXA 5DBYA 3B9MA 5HOZA 1MA9A 2BXHA 2KWFA 4S1YA 5D7GA 4F5SA 3KIKA 5IJ5A 2LXSA 1J78A 1LOTA 1HK1A 5GIPA 4N0FD 4DM0A 1E7EA 1HK4A 4IW1A 1E7FA 3NVMA 4LA0A 3NVIA 3LU8A 2EFHA 4BY9C 3B9LA 3M99C 5BPKA
chains in the Genus database with same CATH topology
2KWFA 2GUTA 4D7XA 1SB0A 2LXSA 2LQIA 1KDXA 2AGHB 4I9OA 2LQHA 2LXTA 2K0NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KWF A;  2GUT A;  4D7X A;  1SB0 A;  2LXS A;  2LQI A;  1KDX A;  2AGH B;  4I9O A;  2LQH A;  2LXT A;  2K0N A; 
#chains in the Genus database with same CATH topology
 3MHH B;  2KBZ A;  3V08 A;  4C31 B;  4OTT A;  2XMO A;  1BM0 A;  4GDL B;  4JK4 A;  4K71 A;  4ZC6 A;  4ZBR A;  3SQJ A;  3FWB C;  2XVQ A;  3UIV A;  4F5V A;  2BXK A;  1HK5 A;  5DQF A;  2BXC A;  5ID9 A;  3FNM A;  4LUH A;  3VQI A;  2LXT A;  5GIO A;  3PLA A;  1E7G A;  1HA2 A;  2ROH A;  1VFI A;  4OT2 A;  2YDF A;  3FWC C;  3GQX A;  4I9O A;  1BJ5 A;  1E7C A;  2XW1 A;  4DHX B;  2OZB B;  3G9K D;  5IIH A;  3H3A A;  4IW2 A;  1MIW A;  2BXI A;  4LUF A;  4E99 A;  4Z69 A;  3NMU A;  2BXP A;  3TDL A;  2BXD A;  4GDX A;  5IJE A;  2EFD A;  2QM6 A;  2Z8J A;  1E78 A;  3MHS B;  4L9Q A;  1N5U A;  1MUS A;  2I2Z A;  2BXE A;  4GG2 A;  2EFC A;  2NNW A;  3KJL A;  2BXQ A;  2XVV A;  1SB0 A;  2I30 A;  2LQI A;  4K2C A;  1KW2 A;  2AGH B;  4J2V A;  4BKE A;  1J7E A;  2LQH A;  4FJC B;  4M70 B;  1E7I A;  4Z9O A;  4L8U A;  4F5U A;  1H5W A;  1LNS A;  5B5T A;  2DBW A;  2BXM A;  2DYO A;  2BXF A;  1E7A A;  1MIV A;  2AJE A;  2E0X A;  4D7X A;  1E7B A;  1E7H A;  4OTU A;  3WHQ A;  5IIX A;  1VZS A;  2BXB A;  4G03 A;  1TF0 A;  2QHB A;  3NVK A;  3V03 A;  3SIV B;  5ID7 A;  5IFO A;  5IIU A;  2DBX A;  2GUT A;  1MIY A;  3SIU B;  1JNB A;  2QMC A;  1IJG A;  5GHK A;  1H9Z A;  4LB2 A;  4FK5 B;  1TXU A;  2BXO A;  4MBE C;  1GNI A;  4NAW B;  2OT3 A;  2VUE A;  1UOR A;  2XW0 A;  2VDB A;  3JRY A;  3V09 A;  1BKE A;  4N0U D;  4G04 A;  3CX9 A;  1GNJ A;  3WHR A;  4ZUX V;  2BXL A;  2V36 A;  1MM8 A;  1HK2 A;  4PO0 A;  2XVW A;  4N3Z A;  4HGK A;  2JUH A;  3GQU A;  3LU7 A;  2Z8K A;  4HGM B;  3GA9 L;  3JQZ A;  3LU6 A;  4LB9 A;  2VUF A;  1HK3 A;  4EMX A;  2DG5 A;  2CKX A;  1MUH A;  2EFE A;  2K0N A;  2E0Y A;  4OR0 A;  2BX8 A;  2XSI A;  2Z8I A;  4ZCG A;  4TQ0 A;  4WA6 B;  5GIN A;  4F5T A;  2LOQ A;  4L9K A;  2DBU A;  3A75 A;  1NT2 B;  3WHS A;  2BXG A;  2BXN A;  1O9X A;  3A73 A;  3ICX A;  4ZBK A;  1AO6 A;  4G01 A;  4ZBQ A;  3H37 A;  5IJF A;  3BPJ A;  2DYM A;  3ECP A;  5FUO A;  4W4U B;  2XVU A;  2BXA A;  1FOU A;  4TQ1 A;  3W1S A;  2NQO A;  4FIP B;  4GDK B;  1KXP D;  1KDX A;  5DBY A;  3B9M A;  5HOZ A;  1MA9 A;  2BXH A;  2KWF A;  4S1Y A;  5D7G A;  4F5S A;  3KIK A;  5IJ5 A;  2LXS A;  1J78 A;  1LOT A;  1HK1 A;  5GIP A;  4N0F D;  4DM0 A;  1E7E A;  1HK4 A;  4IW1 A;  1E7F A;  3NVM A;  4LA0 A;  3NVI A;  3LU8 A;  2EFH A;  4BY9 C;  3B9L A;  3M99 C;  5BPK A; 
#chains in the Genus database with same CATH homology
 2KWF A;  2GUT A;  4D7X A;  1SB0 A;  2LXS A;  2LQI A;  1KDX A;  2AGH B;  4I9O A;  2LQH A;  2LXT A;  2K0N A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...