2GWLA

Crystal structure of the salmonella spvb atr domain in complex with nadh
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
200
structure length
200
Chain Sequence
b'SKQIQALRYYSAQGYSVINKYLRGDDYPETQAKETLLSRDYLSTNEPSDEEFKNAMSVYINDIAEGLSSLPETDHRVVYRGLKLDKPALSDVLKEYTTIGNIIIDKAFMSTSPDKAWINDTILNIYLEKGHKGRILGDVAHFKGEAEMLFPPNTKLKIESIVNCGSQDFASQLSKLRLSDDATADTNRIKRIINMRVLNS'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title A steric antagonism of actin polymerization by a salmonella virulence protein.
pubmed doi rcsb
molecule keywords 65 kDa virulence protein
source organism Salmonella typhimurium
molecule tags Transferase
total genus 61
structure length 200
sequence length 200
ec nomenclature ec 2.4.2.31: NAD(+)--protein-arginine ADP-ribosyltransferase.
pdb deposition date 2006-05-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 2gwlA00
1PWPA 2WN6A 1G24A 4H0YA 1OJQA 5GTTA 2WN7A 1GZEA 2BOVB 1QS2A 1GXZA 4H03A 2GWMA 4WF6A 1QS1A 1ZXVA 3NTSA 4ELNA 4XM7A 2C8AA 1PWQA 1GXYA 1GY0A 4XSHB 2J3VA 2C8FE 4TR5A 4XM6A 2C8GA 1PWVA 2A9KB 4H0TA 1OG1A 4DV8A 1R4BA 4XM8A 3U0JA 4PKSA 1PWUA 4XSGB 5D1TA 4PKVA 2J3ZA 4GY2A 2C8BX 2C8CA 4PKTA 5BWMB 2C89A 4PKRA 1UZIA 1JKYA 1OG3A 4FMLA 2WN8A 4H0XA 1YQYA 5D1UA 1R45A 2A78B 1GIRA 3BW8A 1OG4A 5D1SA 1PWWA 1GZFA 4PKUA 4GF1A 2C8EE 5H03A 4FXQA 1J7NA 2WN4A 2C8HA 3BUZA 1OJZA 2J3XA 5H04A 2WN5A 2C8DA 4FK7A 2GWLA 4H0VA 1GIQA 4PKQA 5DZQA 4PKWA
chains in the Genus database with same CATH superfamily
1PWPA 2WN6A 1G24A 4H0YA 1OJQA 5GTTA 2WN7A 1GZEA 2BOVB 1QS2A 1GXZA 4H03A 2GWMA 4WF6A 1QS1A 1ZXVA 3NTSA 4ELNA 4XM7A 2C8AA 1PWQA 1GXYA 1GY0A 4XSHB 2J3VA 2C8FE 4TR5A 4XM6A 2C8GA 1PWVA 2A9KB 4H0TA 1OG1A 4DV8A 1R4BA 4XM8A 3U0JA 4PKSA 1PWUA 4XSGB 5D1TA 4PKVA 2J3ZA 4GY2A 2C8BX 2C8CA 4PKTA 5BWMB 2C89A 4PKRA 1UZIA 1JKYA 1OG3A 4FMLA 2WN8A 4H0XA 1YQYA 5D1UA 1R45A 2A78B 1GIRA 3BW8A 1OG4A 5D1SA 1PWWA 1GZFA 4PKUA 4GF1A 2C8EE 5H03A 4FXQA 1J7NA 2WN4A 2C8HA 3BUZA 1OJZA 2J3XA 5H04A 2WN5A 2C8DA 4FK7A 2GWLA 4H0VA 1GIQA 4PKQA 5DZQA 4PKWA
chains in the Genus database with same CATH topology
1PWPA 2WN6A 1G24A 4H0YA 1OJQA 5GTTA 2WN7A 1GZEA 2BOVB 1QS2A 1GXZA 4H03A 2GWMA 4WF6A 1QS1A 1ZXVA 3NTSA 4ELNA 4XM7A 2C8AA 1PWQA 1GXYA 1GY0A 4XSHB 2J3VA 2C8FE 4TR5A 4XM6A 2C8GA 1PWVA 2A9KB 4H0TA 1OG1A 4DV8A 1R4BA 4XM8A 3U0JA 4PKSA 1PWUA 4XSGB 5D1TA 4PKVA 2J3ZA 4GY2A 2C8BX 2C8CA 4PKTA 5BWMB 2C89A 4PKRA 1UZIA 1JKYA 1OG3A 4FMLA 2WN8A 4H0XA 1YQYA 5D1UA 1R45A 2A78B 1GIRA 3BW8A 1OG4A 5D1SA 1PWWA 1GZFA 4PKUA 4GF1A 2C8EE 5H03A 4FXQA 1J7NA 2WN4A 2C8HA 3BUZA 1OJZA 2J3XA 5H04A 2WN5A 2C8DA 4FK7A 2GWLA 4H0VA 1GIQA 4PKQA 5DZQA 4PKWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PWP A;  2WN6 A;  1G24 A;  4H0Y A;  1OJQ A;  5GTT A;  2WN7 A;  1GZE A;  2BOV B;  1QS2 A;  1GXZ A;  4H03 A;  2GWM A;  4WF6 A;  1QS1 A;  1ZXV A;  3NTS A;  4ELN A;  4XM7 A;  2C8A A;  1PWQ A;  1GXY A;  1GY0 A;  4XSH B;  2J3V A;  2C8F E;  4TR5 A;  4XM6 A;  2C8G A;  1PWV A;  2A9K B;  4H0T A;  1OG1 A;  4DV8 A;  1R4B A;  4XM8 A;  3U0J A;  4PKS A;  1PWU A;  4XSG B;  5D1T A;  4PKV A;  2J3Z A;  4GY2 A;  2C8B X;  2C8C A;  4PKT A;  5BWM B;  2C89 A;  4PKR A;  1UZI A;  1JKY A;  1OG3 A;  4FML A;  2WN8 A;  4H0X A;  1YQY A;  5D1U A;  1R45 A;  2A78 B;  1GIR A;  3BW8 A;  1OG4 A;  5D1S A;  1PWW A;  1GZF A;  4PKU A;  4GF1 A;  2C8E E;  5H03 A;  4FXQ A;  1J7N A;  2WN4 A;  2C8H A;  3BUZ A;  1OJZ A;  2J3X A;  5H04 A;  2WN5 A;  2C8D A;  4FK7 A;  2GWL A;  4H0V A;  1GIQ A;  4PKQ A;  5DZQ A;  4PKW A; 
#chains in the Genus database with same CATH topology
 1PWP A;  2WN6 A;  1G24 A;  4H0Y A;  1OJQ A;  5GTT A;  2WN7 A;  1GZE A;  2BOV B;  1QS2 A;  1GXZ A;  4H03 A;  2GWM A;  4WF6 A;  1QS1 A;  1ZXV A;  3NTS A;  4ELN A;  4XM7 A;  2C8A A;  1PWQ A;  1GXY A;  1GY0 A;  4XSH B;  2J3V A;  2C8F E;  4TR5 A;  4XM6 A;  2C8G A;  1PWV A;  2A9K B;  4H0T A;  1OG1 A;  4DV8 A;  1R4B A;  4XM8 A;  3U0J A;  4PKS A;  1PWU A;  4XSG B;  5D1T A;  4PKV A;  2J3Z A;  4GY2 A;  2C8B X;  2C8C A;  4PKT A;  5BWM B;  2C89 A;  4PKR A;  1UZI A;  1JKY A;  1OG3 A;  4FML A;  2WN8 A;  4H0X A;  1YQY A;  5D1U A;  1R45 A;  2A78 B;  1GIR A;  3BW8 A;  1OG4 A;  5D1S A;  1PWW A;  1GZF A;  4PKU A;  4GF1 A;  2C8E E;  5H03 A;  4FXQ A;  1J7N A;  2WN4 A;  2C8H A;  3BUZ A;  1OJZ A;  2J3X A;  5H04 A;  2WN5 A;  2C8D A;  4FK7 A;  2GWL A;  4H0V A;  1GIQ A;  4PKQ A;  5DZQ A;  4PKW A; 
#chains in the Genus database with same CATH homology
 1PWP A;  2WN6 A;  1G24 A;  4H0Y A;  1OJQ A;  5GTT A;  2WN7 A;  1GZE A;  2BOV B;  1QS2 A;  1GXZ A;  4H03 A;  2GWM A;  4WF6 A;  1QS1 A;  1ZXV A;  3NTS A;  4ELN A;  4XM7 A;  2C8A A;  1PWQ A;  1GXY A;  1GY0 A;  4XSH B;  2J3V A;  2C8F E;  4TR5 A;  4XM6 A;  2C8G A;  1PWV A;  2A9K B;  4H0T A;  1OG1 A;  4DV8 A;  1R4B A;  4XM8 A;  3U0J A;  4PKS A;  1PWU A;  4XSG B;  5D1T A;  4PKV A;  2J3Z A;  4GY2 A;  2C8B X;  2C8C A;  4PKT A;  5BWM B;  2C89 A;  4PKR A;  1UZI A;  1JKY A;  1OG3 A;  4FML A;  2WN8 A;  4H0X A;  1YQY A;  5D1U A;  1R45 A;  2A78 B;  1GIR A;  3BW8 A;  1OG4 A;  5D1S A;  1PWW A;  1GZF A;  4PKU A;  4GF1 A;  2C8E E;  5H03 A;  4FXQ A;  1J7N A;  2WN4 A;  2C8H A;  3BUZ A;  1OJZ A;  2J3X A;  5H04 A;  2WN5 A;  2C8D A;  4FK7 A;  2GWL A;  4H0V A;  1GIQ A;  4PKQ A;  5DZQ A;  4PKW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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