2GWLA

Crystal structure of the salmonella spvb atr domain in complex with nadh
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
200
structure length
200
Chain Sequence
SKQIQALRYYSAQGYSVINKYLRGDDYPETQAKETLLSRDYLSTNEPSDEEFKNAMSVYINDIAEGLSSLPETDHRVVYRGLKLDKPALSDVLKEYTTIGNIIIDKAFMSTSPDKAWINDTILNIYLEKGHKGRILGDVAHFKGEAEMLFPPNTKLKIESIVNCGSQDFASQLSKLRLSDDATADTNRIKRIINMRVLNS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
source organism Salmonella typhimurium
publication title A steric antagonism of actin polymerization by a salmonella virulence protein.
pubmed doi rcsb
molecule keywords 65 kDa virulence protein
total genus 61
structure length 200
sequence length 200
ec nomenclature ec 2.4.2.31: NAD(+)--protein-arginine ADP-ribosyltransferase.
pdb deposition date 2006-05-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 2gwlA00
1PWWA 4PKSA 1OJQA 2A9KB 1R4BA 2BOVB 1J7NA 1GZEA 1G24A 2J3XA 1PWQA 4GF1A 1GY0A 5DZQA 1GXYA 2C8CA 5D1UA 1UZIA 4PKTA 4FK7A 4PKUA 2J3VA 4ELNA 2J3ZA 3BUZA 1YQYA 1ZXVA 2WN7A 4XSGB 1OG1A 4H0YA 4PKVA 4FXQA 4XM8A 1JKYA 2GWMA 2WN8A 2GWLA 2C8HA 4PKQA 5GTTA 2C8FE 5H04A 2C89A 3NTSA 1OG4A 3BW8A 1GZFA 2A78B 4PKRA 1PWUA 1PWVA 1PWPA 2C8DA 1OJZA 2C8GA 2C8BX 2C8EE 2WN4A 4XM7A 2C8AA 1R45A 4H03A 2WN5A 1QS1A 4GY2A 5D1TA 4H0XA 5BWMB 2WN6A 4TR5A 4XM6A 4XSHB 1GXZA 4PKWA 1GIQA 5H03A 1OG3A 1QS2A 3U0JA 4H0VA 4H0TA 4DV8A 4WF6A 1GIRA 4FMLA 5D1SA
chains in the Genus database with same CATH superfamily
1PWWA 4PKSA 1OJQA 2A9KB 1R4BA 2BOVB 1J7NA 1GZEA 1G24A 2J3XA 1PWQA 4GF1A 1GY0A 5DZQA 1GXYA 2C8CA 5D1UA 1UZIA 4PKTA 4FK7A 4PKUA 2J3VA 4ELNA 2J3ZA 3BUZA 1YQYA 1ZXVA 2WN7A 4XSGB 1OG1A 4H0YA 4PKVA 4FXQA 4XM8A 1JKYA 2GWMA 2WN8A 2GWLA 2C8HA 4PKQA 5GTTA 2C8FE 5H04A 2C89A 3NTSA 1OG4A 3BW8A 1GZFA 2A78B 4PKRA 1PWUA 1PWVA 1PWPA 2C8DA 1OJZA 2C8GA 2C8BX 2C8EE 2WN4A 4XM7A 2C8AA 1R45A 4H03A 2WN5A 1QS1A 4GY2A 5D1TA 4H0XA 5BWMB 2WN6A 4TR5A 4XM6A 4XSHB 1GXZA 4PKWA 1GIQA 5H03A 1OG3A 1QS2A 3U0JA 4H0VA 4H0TA 4DV8A 4WF6A 1GIRA 4FMLA 5D1SA
chains in the Genus database with same CATH topology
1PWWA 4PKSA 1OJQA 2A9KB 1R4BA 2BOVB 1J7NA 1GZEA 1G24A 2J3XA 1PWQA 4GF1A 1GY0A 5DZQA 1GXYA 2C8CA 5D1UA 1UZIA 4PKTA 4FK7A 4PKUA 2J3VA 4ELNA 2J3ZA 3BUZA 1YQYA 1ZXVA 2WN7A 4XSGB 1OG1A 4H0YA 4PKVA 4FXQA 4XM8A 1JKYA 2GWMA 2WN8A 2GWLA 2C8HA 4PKQA 5GTTA 2C8FE 5H04A 2C89A 3NTSA 1OG4A 3BW8A 1GZFA 2A78B 4PKRA 1PWUA 1PWVA 1PWPA 2C8DA 1OJZA 2C8GA 2C8BX 2C8EE 2WN4A 4XM7A 2C8AA 1R45A 4H03A 2WN5A 1QS1A 4GY2A 5D1TA 4H0XA 5BWMB 2WN6A 4TR5A 4XM6A 4XSHB 1GXZA 4PKWA 1GIQA 5H03A 1OG3A 1QS2A 3U0JA 4H0VA 4H0TA 4DV8A 4WF6A 1GIRA 4FMLA 5D1SA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PWW A;  4PKS A;  1OJQ A;  2A9K B;  1R4B A;  2BOV B;  1J7N A;  1GZE A;  1G24 A;  2J3X A;  1PWQ A;  4GF1 A;  1GY0 A;  5DZQ A;  1GXY A;  2C8C A;  5D1U A;  1UZI A;  4PKT A;  4FK7 A;  4PKU A;  2J3V A;  4ELN A;  2J3Z A;  3BUZ A;  1YQY A;  1ZXV A;  2WN7 A;  4XSG B;  1OG1 A;  4H0Y A;  4PKV A;  4FXQ A;  4XM8 A;  1JKY A;  2GWM A;  2WN8 A;  2GWL A;  2C8H A;  4PKQ A;  5GTT A;  2C8F E;  5H04 A;  2C89 A;  3NTS A;  1OG4 A;  3BW8 A;  1GZF A;  2A78 B;  4PKR A;  1PWU A;  1PWV A;  1PWP A;  2C8D A;  1OJZ A;  2C8G A;  2C8B X;  2C8E E;  2WN4 A;  4XM7 A;  2C8A A;  1R45 A;  4H03 A;  2WN5 A;  1QS1 A;  4GY2 A;  5D1T A;  4H0X A;  5BWM B;  2WN6 A;  4TR5 A;  4XM6 A;  4XSH B;  1GXZ A;  4PKW A;  1GIQ A;  5H03 A;  1OG3 A;  1QS2 A;  3U0J A;  4H0V A;  4H0T A;  4DV8 A;  4WF6 A;  1GIR A;  4FML A;  5D1S A; 
#chains in the Genus database with same CATH topology
 1PWW A;  4PKS A;  1OJQ A;  2A9K B;  1R4B A;  2BOV B;  1J7N A;  1GZE A;  1G24 A;  2J3X A;  1PWQ A;  4GF1 A;  1GY0 A;  5DZQ A;  1GXY A;  2C8C A;  5D1U A;  1UZI A;  4PKT A;  4FK7 A;  4PKU A;  2J3V A;  4ELN A;  2J3Z A;  3BUZ A;  1YQY A;  1ZXV A;  2WN7 A;  4XSG B;  1OG1 A;  4H0Y A;  4PKV A;  4FXQ A;  4XM8 A;  1JKY A;  2GWM A;  2WN8 A;  2GWL A;  2C8H A;  4PKQ A;  5GTT A;  2C8F E;  5H04 A;  2C89 A;  3NTS A;  1OG4 A;  3BW8 A;  1GZF A;  2A78 B;  4PKR A;  1PWU A;  1PWV A;  1PWP A;  2C8D A;  1OJZ A;  2C8G A;  2C8B X;  2C8E E;  2WN4 A;  4XM7 A;  2C8A A;  1R45 A;  4H03 A;  2WN5 A;  1QS1 A;  4GY2 A;  5D1T A;  4H0X A;  5BWM B;  2WN6 A;  4TR5 A;  4XM6 A;  4XSH B;  1GXZ A;  4PKW A;  1GIQ A;  5H03 A;  1OG3 A;  1QS2 A;  3U0J A;  4H0V A;  4H0T A;  4DV8 A;  4WF6 A;  1GIR A;  4FML A;  5D1S A; 
#chains in the Genus database with same CATH homology
 1PWW A;  4PKS A;  1OJQ A;  2A9K B;  1R4B A;  2BOV B;  1J7N A;  1GZE A;  1G24 A;  2J3X A;  1PWQ A;  4GF1 A;  1GY0 A;  5DZQ A;  1GXY A;  2C8C A;  5D1U A;  1UZI A;  4PKT A;  4FK7 A;  4PKU A;  2J3V A;  4ELN A;  2J3Z A;  3BUZ A;  1YQY A;  1ZXV A;  2WN7 A;  4XSG B;  1OG1 A;  4H0Y A;  4PKV A;  4FXQ A;  4XM8 A;  1JKY A;  2GWM A;  2WN8 A;  2GWL A;  2C8H A;  4PKQ A;  5GTT A;  2C8F E;  5H04 A;  2C89 A;  3NTS A;  1OG4 A;  3BW8 A;  1GZF A;  2A78 B;  4PKR A;  1PWU A;  1PWV A;  1PWP A;  2C8D A;  1OJZ A;  2C8G A;  2C8B X;  2C8E E;  2WN4 A;  4XM7 A;  2C8A A;  1R45 A;  4H03 A;  2WN5 A;  1QS1 A;  4GY2 A;  5D1T A;  4H0X A;  5BWM B;  2WN6 A;  4TR5 A;  4XM6 A;  4XSH B;  1GXZ A;  4PKW A;  1GIQ A;  5H03 A;  1OG3 A;  1QS2 A;  3U0J A;  4H0V A;  4H0T A;  4DV8 A;  4WF6 A;  1GIR A;  4FML A;  5D1S A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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