2GYKA

Crystal structure of the complex of the colicin e9 dnase domain with a mutant immunity protein, imme9 (d51a)
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
83
structure length
83
Chain Sequence
LKHSISDYTEAEFLQLVTTICNADTSSEEELVKLVTHFEEMTEHPSGSALIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antibiotic/antibiotic inhibitor
molecule keywords Colicin-E9 immunity protein
publication title Crystal structures of the complexes of the Colicin E9 DNase domain with mutant immunity proteins
rcsb
source organism Escherichia coli k12
total genus 29
structure length 83
sequence length 83
chains with identical sequence E
ec nomenclature
pdb deposition date 2006-05-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01320 Colicin_Pyocin Colicin immunity protein / pyocin immunity protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.20 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Colicin E immunity protein 2gykA00
7CEIA 1AYIA 2JBGA 1MZ8A 1GXHA 1GXGA 1CEIA 2GZFA 1FR2A 3GJNA 4QKOA 1EMVA 1UNKA 2NO8A 2GZEA 5EW5E 2VLNA 1IMPA 2VLOA 1IMQA 2GZJA 1ZNVA 2K0DX 2WPTA 4F37A 2ERHA 2JAZA 4UHPB 1BXIA 1UJZA 2GZGA 2GZIA 3GKLC 1E0HA 3U43A 2JB0A 2K5XA 2GYKA 2VLPA 2VLQA
chains in the Genus database with same CATH superfamily
1NJIQ 1KC8Q 2JBGA 2PNGA 1MZ8A 2LL8A 1GXGA 4BPHA 1N8RQ 1UNKA 3Q20A 2L4BA 3WBHA 2OTLP 4F37A 3G28A 2N98A 2GZIA 2PEIA 4NEOA 2FQ1A 3CXCO 4PH1A 1M90Q 3CCMP 4PXHB 3DS4A 3G4SP 1BAJA 3CCVP 3GJNA 2OTJP 4QKOA 5EW5E 4XRQA 3G1GA 5HGNA 3CCRP 4XFZA 2BHVA 1YI2P 4GR2A 4U0BA 1M1KQ 1T8KA 2EHTA 3G1IA 2EHSA 2M8LA 3CMEP 1AF8A 2PENA 3CD6P 2CNRA 3DS3A 3G71P 3I55P 4XFYA 2KG9A 1A8OA 3CCUP 1BXIA 2FADA 3B4QA 2FVFA 2VLQA 3HZQA 2FVEA 3CC7P 2K0XA 2K93A 3DS5A 1W2BO 1ACPA 1K73Q 2KGCA 4U0DA 2FQ0A 3NY7B 2L6EA 1YJNP 3DS2A 5JPAA 3E2DA 1VQ4P 2Z45A 3U43A 1VQLP 1Q7YQ 2JU2A 3GZMA 2P9XA 3G21A 3P05A 2VSQA 2PEKA 2KORA 2N6YA 2EG5A 1HY8A 2KR5A 3LMOA 5HGOA 2GDXA 2MVUA 1IUQA 4PH0A 2CG5B 2LIUA 2N50A 2K94A 1EIAA 1VQNP 2L9FA 1M6NA 3HYBA 1AUMA 4H2WC 2XT1A 1RO0A 5DCKA 4COCA 2FACA 4BPFA 3DPHA 4UHPB 3CCQP 2EFJA 1YJ9P 2X2BA 2XZ0D 1DNYA 1K30A 2ONTA 2KG8A 1IMPA 2VLOA 5BS1A 1NQ4A 2WPTA 3LRYA 4PWVB 2XZ1C 3H0DA 3RG6C 2KOPA 1KD1Q 4U0EA 2LMLA 2KWLA 4U0AA 5BS2A 4H2YC 1L0HA 2VLNA 2GDYA 1IMQA 2OARA 2JQ4A 2K0DX 2KODA 1VQ7P 2M5RA 2JAZA 2PEOA 1F80D 4R0MA 4COPA 2K5XA 4IPYA 2L0QA 2GDWA 7CEIA 2N5HA 2CQ8A 2K2QA 5HV8A 3CC4P 1KQSO 2KGAA 4XROA 2QNWA 5HGLA 2MY5A 1M74A 1VQMP 2CWOA 5I4TG 5EJDA 3OW2O 2LIWA 4WYMA 1VQ8P 1D1DA 2PEJA 1RNIA 2E1MA 3G29A 2FVAA 1VKUA 1E6JP 1FR2A 2KOOA 1EMVA 4XFXA 2PY8A 1Q81Q 2MF4A 3MGEA 2QA4P 2LKIA 1KLPA 3NTEA 3DS1A 5KP8B 3CE7A 2BUOA 1E0HA 3B5IA 1VQ5P 1DV5A 2KOSA 4MRTC 4CA3A 3CCEP 2KGEA 1HQBA 1OR5A 2Z46A 2CGQA 4HKGA 2JO0A 3GZLA 1VQ9P 2MR7A 1Q82Q 1K9MQ 1AYIA 5F2KA 3EJEA 2K92A 2QEXP 1RO2A 2M8NA 2FQ2A 4M0IA 1VQOP 2DNWA 2PEQA 2N6ZA 2FHSC 2MR8A 3EJBA 1JJ2O 5HVCA 2N5IA 2GZGA 2LPKA 2KOQA 2MD9A 1YIJP 2KGDA 1QVGO 1GXHA 1YITP 2DGYA 3I56P 3G6EP 2GZEA 4DG9A 5HGMA 1X3OA 2XXMA 2GZJA 2Z44A 2ROQA 3CCJP 2JYLA 2JB0A 2KG6A 2JGPA 2AFDA 2AVAA 2L22A 5CZDB 1CEIA 2GZFA 1Q86Q 3G0VA 1S72P 1M6EX 2JU1A 2NO8A 2LOLA 1GPJA 1VQPP 1Z6MA 2PEMA 3CCSP 2M8PA 3EJDA 1EOQA 3H47A 1YHQP 5KP6B 2GYKA 2LTEA 1VQKP 3CCLP 2AF8A 4QNBA 3RG2A 3DS0A 1A43A 1YJWP 5F2OA 3CMAP 1VQ6P 3CPWO 1ZMBA 2FAEA 4H2XC 4BPGA 2EIAA 2ERHA 2JYGA 2MVVA 1UJZA 2LF4A 3DTJA 4U0FA 1L0IA 5F2NA 2XV6A 1K8AQ 1QRJA 3M1MA 1VHNA 3G26A 3H4EA 1QVFO 2KW2A 5KP7B 2AFEA 3CC2P 2K0YA 4U0CA 1ZNVA 4IZ6A 4GR6A 3VRLC 3GKLC 2VLPA
chains in the Genus database with same CATH topology
7CEIA 1AYIA 2JBGA 1MZ8A 1GXHA 1GXGA 1CEIA 2GZFA 1FR2A 3GJNA 4QKOA 1EMVA 1UNKA 2NO8A 2GZEA 5EW5E 2VLNA 1IMPA 2VLOA 1IMQA 2GZJA 1ZNVA 2K0DX 2WPTA 4F37A 2ERHA 2JAZA 4UHPB 1BXIA 1UJZA 2GZGA 2GZIA 3GKLC 1E0HA 3U43A 2JB0A 2K5XA 2GYKA 2VLPA 2VLQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 7CEI A;  1AYI A;  2JBG A;  1MZ8 A;  1GXH A;  1GXG A;  1CEI A;  2GZF A;  1FR2 A;  3GJN A;  4QKO A;  1EMV A;  1UNK A;  2NO8 A;  2GZE A;  5EW5 E;  2VLN A;  1IMP A;  2VLO A;  1IMQ A;  2GZJ A;  1ZNV A;  2K0D X;  2WPT A;  4F37 A;  2ERH A;  2JAZ A;  4UHP B;  1BXI A;  1UJZ A;  2GZG A;  2GZI A;  3GKL C;  1E0H A;  3U43 A;  2JB0 A;  2K5X A;  2GYK A;  2VLP A;  2VLQ A; 
#chains in the Genus database with same CATH topology
 1NJI Q;  1KC8 Q;  2JBG A;  2PNG A;  1MZ8 A;  2LL8 A;  1GXG A;  4BPH A;  1N8R Q;  1UNK A;  3Q20 A;  2L4B A;  3WBH A;  2OTL P;  4F37 A;  3G28 A;  2N98 A;  2GZI A;  2PEI A;  4NEO A;  2FQ1 A;  3CXC O;  4PH1 A;  1M90 Q;  3CCM P;  4PXH B;  3DS4 A;  3G4S P;  1BAJ A;  3CCV P;  3GJN A;  2OTJ P;  4QKO A;  5EW5 E;  4XRQ A;  3G1G A;  5HGN A;  3CCR P;  4XFZ A;  2BHV A;  1YI2 P;  4GR2 A;  4U0B A;  1M1K Q;  1T8K A;  2EHT A;  3G1I A;  2EHS A;  2M8L A;  3CME P;  1AF8 A;  2PEN A;  3CD6 P;  2CNR A;  3DS3 A;  3G71 P;  3I55 P;  4XFY A;  2KG9 A;  1A8O A;  3CCU P;  1BXI A;  2FAD A;  3B4Q A;  2FVF A;  2VLQ A;  3HZQ A;  2FVE A;  3CC7 P;  2K0X A;  2K93 A;  3DS5 A;  1W2B O;  1ACP A;  1K73 Q;  2KGC A;  4U0D A;  2FQ0 A;  3NY7 B;  2L6E A;  1YJN P;  3DS2 A;  5JPA A;  3E2D A;  1VQ4 P;  2Z45 A;  3U43 A;  1VQL P;  1Q7Y Q;  2JU2 A;  3GZM A;  2P9X A;  3G21 A;  3P05 A;  2VSQ A;  2PEK A;  2KOR A;  2N6Y A;  2EG5 A;  1HY8 A;  2KR5 A;  3LMO A;  5HGO A;  2GDX A;  2MVU A;  1IUQ A;  4PH0 A;  2CG5 B;  2LIU A;  2N50 A;  2K94 A;  1EIA A;  1VQN P;  2L9F A;  1M6N A;  3HYB A;  1AUM A;  4H2W C;  2XT1 A;  1RO0 A;  5DCK A;  4COC A;  2FAC A;  4BPF A;  3DPH A;  4UHP B;  3CCQ P;  2EFJ A;  1YJ9 P;  2X2B A;  2XZ0 D;  1DNY A;  1K30 A;  2ONT A;  2KG8 A;  1IMP A;  2VLO A;  5BS1 A;  1NQ4 A;  2WPT A;  3LRY A;  4PWV B;  2XZ1 C;  3H0D A;  3RG6 C;  2KOP A;  1KD1 Q;  4U0E A;  2LML A;  2KWL A;  4U0A A;  5BS2 A;  4H2Y C;  1L0H A;  2VLN A;  2GDY A;  1IMQ A;  2OAR A;  2JQ4 A;  2K0D X;  2KOD A;  1VQ7 P;  2M5R A;  2JAZ A;  2PEO A;  1F80 D;  4R0M A;  4COP A;  2K5X A;  4IPY A;  2L0Q A;  2GDW A;  7CEI A;  2N5H A;  2CQ8 A;  2K2Q A;  5HV8 A;  3CC4 P;  1KQS O;  2KGA A;  4XRO A;  2QNW A;  5HGL A;  2MY5 A;  1M74 A;  1VQM P;  2CWO A;  5I4T G;  5EJD A;  3OW2 O;  2LIW A;  4WYM A;  1VQ8 P;  1D1D A;  2PEJ A;  1RNI A;  2E1M A;  3G29 A;  2FVA A;  1VKU A;  1E6J P;  1FR2 A;  2KOO A;  1EMV A;  4XFX A;  2PY8 A;  1Q81 Q;  2MF4 A;  3MGE A;  2QA4 P;  2LKI A;  1KLP A;  3NTE A;  3DS1 A;  5KP8 B;  3CE7 A;  2BUO A;  1E0H A;  3B5I A;  1VQ5 P;  1DV5 A;  2KOS A;  4MRT C;  4CA3 A;  3CCE P;  2KGE A;  1HQB A;  1OR5 A;  2Z46 A;  2CGQ A;  4HKG A;  2JO0 A;  3GZL A;  1VQ9 P;  2MR7 A;  1Q82 Q;  1K9M Q;  1AYI A;  5F2K A;  3EJE A;  2K92 A;  2QEX P;  1RO2 A;  2M8N A;  2FQ2 A;  4M0I A;  1VQO P;  2DNW A;  2PEQ A;  2N6Z A;  2FHS C;  2MR8 A;  3EJB A;  1JJ2 O;  5HVC A;  2N5I A;  2GZG A;  2LPK A;  2KOQ A;  2MD9 A;  1YIJ P;  2KGD A;  1QVG O;  1GXH A;  1YIT P;  2DGY A;  3I56 P;  3G6E P;  2GZE A;  4DG9 A;  5HGM A;  1X3O A;  2XXM A;  2GZJ A;  2Z44 A;  2ROQ A;  3CCJ P;  2JYL A;  2JB0 A;  2KG6 A;  2JGP A;  2AFD A;  2AVA A;  2L22 A;  5CZD B;  1CEI A;  2GZF A;  1Q86 Q;  3G0V A;  1S72 P;  1M6E X;  2JU1 A;  2NO8 A;  2LOL A;  1GPJ A;  1VQP P;  1Z6M A;  2PEM A;  3CCS P;  2M8P A;  3EJD A;  1EOQ A;  3H47 A;  1YHQ P;  5KP6 B;  2GYK A;  2LTE A;  1VQK P;  3CCL P;  2AF8 A;  4QNB A;  3RG2 A;  3DS0 A;  1A43 A;  1YJW P;  5F2O A;  3CMA P;  1VQ6 P;  3CPW O;  1ZMB A;  2FAE A;  4H2X C;  4BPG A;  2EIA A;  2ERH A;  2JYG A;  2MVV A;  1UJZ A;  2LF4 A;  3DTJ A;  4U0F A;  1L0I A;  5F2N A;  2XV6 A;  1K8A Q;  1QRJ A;  3M1M A;  1VHN A;  3G26 A;  3H4E A;  1QVF O;  2KW2 A;  5KP7 B;  2AFE A;  3CC2 P;  2K0Y A;  4U0C A;  1ZNV A;  4IZ6 A;  4GR6 A;  3VRL C;  3GKL C;  2VLP A; 
#chains in the Genus database with same CATH homology
 7CEI A;  1AYI A;  2JBG A;  1MZ8 A;  1GXH A;  1GXG A;  1CEI A;  2GZF A;  1FR2 A;  3GJN A;  4QKO A;  1EMV A;  1UNK A;  2NO8 A;  2GZE A;  5EW5 E;  2VLN A;  1IMP A;  2VLO A;  1IMQ A;  2GZJ A;  1ZNV A;  2K0D X;  2WPT A;  4F37 A;  2ERH A;  2JAZ A;  4UHP B;  1BXI A;  1UJZ A;  2GZG A;  2GZI A;  3GKL C;  1E0H A;  3U43 A;  2JB0 A;  2K5X A;  2GYK A;  2VLP A;  2VLQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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