2H0KA

Crystal structure of a mutant of rat annexin a5
Total Genus 125
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
318
structure length
318
Chain Sequence
ALRGTVTDFSGFDGEADAEVLEKAMEGLGTDEDSILNLLTARSNAQRQQIAEEFETLFGRDLVNDMKSELTGKFEKLIVALMKPSRLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDVVGDTSGYYQRMLVVLLQANRDPDTAIDDAQVELDAQALFQAGELKWGTDEEEFITILGTRSVSHLRRVFDKYMTISGFQIEETIDRETSGNLENLLLAVVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVIVSRSEIDLFNIRKEFRKNFATSLYSMIKGDTSGDYKKALLLLSGGEDD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Blood clotting
molecule keywords Annexin A5
publication title Annexin-A5 assembled into two-dimensional arrays promotes cell membrane repair.
pubmed doi rcsb
source organism Rattus norvegicus
total genus 125
structure length 318
sequence length 318
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-05-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00191 Annexin Annexin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 2h0kA02
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 2h0kA04
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 2h0kA01
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 2h0kA03
2HYVA 1W45A 1M9IA 1W3WA 1HM6A 1W7BA 1YCNA 2Q4CA 1DM5A 1A8AA 2IE6A 4MDUA 1MCXA 2HYWA 1N44A 2HYUA 1AVHA 1BCWA 2ZOCA 3BRXA 1N00A 1DK5A 1HVFA 1N42A 1ANNA 1HVDA 1SAVA 1BO9A 1AXNA 1AIIA 1I4AA 1YJ0A 2H0KA 1BC0A 1N41A 2H0MA 1AVCA 1BCZA 1YIIA 2ZHIA 1HAKA 4EVFA 1ANXA 1A8BA 1G5NA 1BC1A 2IICA 2II2A 1HVEA 1AEIA 1BCYA 1ANWA 1ALAA 2RANA 4HREA 4MDVA 4EVHA 1XJLA 2XO3A 1AVRA 2XO2A 2ZHJA 2IE7A 1AOWA 4X9PA 1HVGA 1BC3A 2H0LA
chains in the Genus database with same CATH superfamily
1KU1A 2HYVA 3ABRA 1R8QE 1YCNA 1R4AE 3AO0A 3USWA 1MCXA 1N44A 3LTLA 1AVHA 1BCWA 3BRXA 1N00A 4D7QA 1YJ0A 1AIIA 4L5MA 1AVCA 1BCZA 1YIIA 1ANXA 2QEZA 4Z21A 2II2A 1BC9A 1HVEA 2OY9A 2IE7A 1BC3A 2H0LA 1QC7A 4OIYA 1M9IA 4KN7X 2Q4CA 2HSNA 2IE6A 4MDUA 1XSZA 2ZOCA 3SWVA 4KMUX 1DK5A 1HVFA 1ANNA 1LKVX 3ANYA 4C0AA 1I4AA 4C7PA 4JXHA 1N41A 1HAKA 4KN4X 4FHRB 2IICA 4JWLA 4JMOA 1S9DE 4A4PA 2RANA 3ABOA 4MDVA 1XJLA 3HJLA 1AOWA 1HVGA 3AJCA 1PBVA 1W7BA 1HM6A 1DM5A 1C1KA 2R09A 3ABQA 1N42A 1SAVA 2H0KA 2H0MA 4FQ0C 2ZHIA 4EVFA 1A8BA 1YGMA 1G5NA 3USYA 1AEIA 1BCYA 4JMIA 1ANWA 1ALAA 1R8SE 3ABSA 3TW5A 2XO3A 1AVRA 2XO2A 1W45A 1W3WA 1UPTB 1A8AA 4D7RA 1XT0B 4Q2SA 2HYWA 1RE0B 1HVDA 1BO9A 1AXNA 4JK1X 3SOHB 1BC0A 3L8NA 1Q8DA 1R8ME 2K6XA 1BC1A 4HREA 2VXGA 4EVHA 2ZHJA 4X9PA 2R0DA 2HYUA
chains in the Genus database with same CATH topology
2HYVA 1W45A 1M9IA 1W3WA 1HM6A 1W7BA 1YCNA 2Q4CA 1DM5A 1A8AA 2IE6A 4MDUA 1MCXA 2HYWA 1N44A 2HYUA 1AVHA 1BCWA 2ZOCA 3BRXA 1N00A 1DK5A 1HVFA 1N42A 1ANNA 1HVDA 1SAVA 1BO9A 1AXNA 1AIIA 1I4AA 1YJ0A 2H0KA 1BC0A 1N41A 2H0MA 1AVCA 1BCZA 1YIIA 2ZHIA 1HAKA 4EVFA 1ANXA 1A8BA 1G5NA 1BC1A 2IICA 2II2A 1HVEA 1AEIA 1BCYA 1ANWA 1ALAA 2RANA 4HREA 4MDVA 4EVHA 1XJLA 2XO3A 1AVRA 2XO2A 2ZHJA 2IE7A 1AOWA 4X9PA 1HVGA 1BC3A 2H0LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HYV A;  1W45 A;  1M9I A;  1W3W A;  1HM6 A;  1W7B A;  1YCN A;  2Q4C A;  1DM5 A;  1A8A A;  2IE6 A;  4MDU A;  1MCX A;  2HYW A;  1N44 A;  2HYU A;  1AVH A;  1BCW A;  2ZOC A;  3BRX A;  1N00 A;  1DK5 A;  1HVF A;  1N42 A;  1ANN A;  1HVD A;  1SAV A;  1BO9 A;  1AXN A;  1AII A;  1I4A A;  1YJ0 A;  2H0K A;  1BC0 A;  1N41 A;  2H0M A;  1AVC A;  1BCZ A;  1YII A;  2ZHI A;  1HAK A;  4EVF A;  1ANX A;  1A8B A;  1G5N A;  1BC1 A;  2IIC A;  2II2 A;  1HVE A;  1AEI A;  1BCY A;  1ANW A;  1ALA A;  2RAN A;  4HRE A;  4MDV A;  4EVH A;  1XJL A;  2XO3 A;  1AVR A;  2XO2 A;  2ZHJ A;  2IE7 A;  1AOW A;  4X9P A;  1HVG A;  1BC3 A;  2H0L A; 
#chains in the Genus database with same CATH topology
 1KU1 A;  2HYV A;  3ABR A;  1R8Q E;  1YCN A;  1R4A E;  3AO0 A;  3USW A;  1MCX A;  1N44 A;  3LTL A;  1AVH A;  1BCW A;  3BRX A;  1N00 A;  4D7Q A;  1YJ0 A;  1AII A;  4L5M A;  1AVC A;  1BCZ A;  1YII A;  1ANX A;  2QEZ A;  4Z21 A;  2II2 A;  1BC9 A;  1HVE A;  2OY9 A;  2IE7 A;  1BC3 A;  2H0L A;  1QC7 A;  4OIY A;  1M9I A;  4KN7 X;  2Q4C A;  2HSN A;  2IE6 A;  4MDU A;  1XSZ A;  2ZOC A;  3SWV A;  4KMU X;  1DK5 A;  1HVF A;  1ANN A;  1LKV X;  3ANY A;  4C0A A;  1I4A A;  4C7P A;  4JXH A;  1N41 A;  1HAK A;  4KN4 X;  4FHR B;  2IIC A;  4JWL A;  4JMO A;  1S9D E;  4A4P A;  2RAN A;  3ABO A;  4MDV A;  1XJL A;  3HJL A;  1AOW A;  1HVG A;  3AJC A;  1PBV A;  1W7B A;  1HM6 A;  1DM5 A;  1C1K A;  2R09 A;  3ABQ A;  1N42 A;  1SAV A;  2H0K A;  2H0M A;  4FQ0 C;  2ZHI A;  4EVF A;  1A8B A;  1YGM A;  1G5N A;  3USY A;  1AEI A;  1BCY A;  4JMI A;  1ANW A;  1ALA A;  1R8S E;  3ABS A;  3TW5 A;  2XO3 A;  1AVR A;  2XO2 A;  1W45 A;  1W3W A;  1UPT B;  1A8A A;  4D7R A;  1XT0 B;  4Q2S A;  2HYW A;  1RE0 B;  1HVD A;  1BO9 A;  1AXN A;  4JK1 X;  3SOH B;  1BC0 A;  3L8N A;  1Q8D A;  1R8M E;  2K6X A;  1BC1 A;  4HRE A;  2VXG A;  4EVH A;  2ZHJ A;  4X9P A;  2R0D A;  2HYU A; 
#chains in the Genus database with same CATH homology
 2HYV A;  1W45 A;  1M9I A;  1W3W A;  1HM6 A;  1W7B A;  1YCN A;  2Q4C A;  1DM5 A;  1A8A A;  2IE6 A;  4MDU A;  1MCX A;  2HYW A;  1N44 A;  2HYU A;  1AVH A;  1BCW A;  2ZOC A;  3BRX A;  1N00 A;  1DK5 A;  1HVF A;  1N42 A;  1ANN A;  1HVD A;  1SAV A;  1BO9 A;  1AXN A;  1AII A;  1I4A A;  1YJ0 A;  2H0K A;  1BC0 A;  1N41 A;  2H0M A;  1AVC A;  1BCZ A;  1YII A;  2ZHI A;  1HAK A;  4EVF A;  1ANX A;  1A8B A;  1G5N A;  1BC1 A;  2IIC A;  2II2 A;  1HVE A;  1AEI A;  1BCY A;  1ANW A;  1ALA A;  2RAN A;  4HRE A;  4MDV A;  4EVH A;  1XJL A;  2XO3 A;  1AVR A;  2XO2 A;  2ZHJ A;  2IE7 A;  1AOW A;  4X9P A;  1HVG A;  1BC3 A;  2H0L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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