2H1OE

Structure of fitab bound to ir36 dna fragment
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
68
structure length
68
Chain Sequence
ASVVIRNLSEATHNAIKFRARAAGRSTEAEIRLILDNIAKAQQTVRLGSMLASIGQEIGGVELEDVRG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Gene regulation/dna complex
molecule keywords IR36-strand 1
publication title Structure of FitAB from Neisseria gonorrhoeae bound to DNA reveals a tetramer of toxin-antitoxin heterodimers containing pin domains and ribbon-helix-helix motifs.
pubmed doi rcsb
source organism Neisseria gonorrhoeae
total genus 17
structure length 68
sequence length 68
chains with identical sequence F, G, H
ec nomenclature
pdb deposition date 2006-05-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1220.10 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Met repressor-like 2h1oE01
2BSQE 1BAZA 1MYKA 2KELA 1BDTA 1EA4A 2JXIA 2HZVA 2CADA 3GXQA 2CAXA 1Q5VA 1B28A 1PARA 1B01A 2BA3A 4FXEA 2WVEA 3H87C 3QOQA 2BNZA 1ARRA 2BJ3A 2K9IA 2JXGA 3FT7A 3LGHA 3OD2A 2K1OA 4ME7E 2GPEA 2BJ1A 2K5JA 2JXHA 1MNTA 3VEBA 2K29A 2WVDA 2K6LA 3VW4A 1ARQA 1QTGA 2BJ9A 2CA9A 2RBFA 2BJ7A 1P94A 2WVBA 2HZAA 1X93A 1IRQA 3FMTA 2AY0A 2CAJA 1MYLA 3VEAA 2WVCA 1NLAA 2CPGA 2WVFA 4D8JA 1BDVA 2BNWA 2BJ8A 2H1OE 4HV0A 1U9PA
chains in the Genus database with same CATH superfamily
1EA4A 2ADLA 4MJWA 1SH0A 2WVEA 4LQ3A 2WK4A 2K9IA 4NRTA 2UUTA 1Q16A 2K1OA 3BSOA 2JXHA 2B43A 2CA9A 2BJ7A 1X93A 4D8JA 1SH2A 4NRUA 3VEAA 1BDVA 2WVCA 3NAHA 2H1OE 2Q2KA 4HV0A 1MYKA 2KOEA 1BDTA 2H3AA 3NO7A 3UR0A 1B28A 2A2BA 1ARRA 2BJ3A 4ME7E 2GPEA 2BJ1A 3SFGA 1ARQA 2KKEA 2BJ9A 1SH3A 2WVBA 2AY0A 2BNWA 2CKWA 2WVFA 1U9PA 3IR7A 1OG7A 3UQSA 2AN7A 2CADA 2HZVA 3G5OA 2UUWA 1B01A 4O4RA 1SIWA 3QOQA 3NNEA 3QIDA 3BSNA 2K5JA 1MNTA 2K6LA 3NAIA 3SFUA 1QTGA 4AAIA 3FMTA 2CAJA 1NLAA 4LQ9A 1BAZA 2KELA 2BJ8A 2JXIA 3GXQA 2CAXA 3H5YA 2JBVA 1Q5VA 3H5XA 1PARA 3UPFA 2BA3A 4FXEA 3H87C 2BNZA 4LRVA 2JXGA 3FT7A 3LGHA 3OD2A 3VEBA 3LJPA 4QPXA 2WVDA 3VW4A 2RBFA 1P94A 2HZAA 1IRQA 2BSQE 1MYLA 2CPGA 1OHNA 2K29A
chains in the Genus database with same CATH topology
2BSQE 1BAZA 1MYKA 2KELA 1BDTA 1EA4A 2JXIA 2HZVA 2CADA 3GXQA 2CAXA 1Q5VA 1B28A 1PARA 1B01A 2BA3A 4FXEA 2WVEA 3H87C 3QOQA 2BNZA 1ARRA 2BJ3A 2K9IA 2JXGA 3FT7A 3LGHA 3OD2A 2K1OA 4ME7E 2GPEA 2BJ1A 2K5JA 2JXHA 1MNTA 3VEBA 2K29A 2WVDA 2K6LA 3VW4A 1ARQA 1QTGA 2BJ9A 2CA9A 2RBFA 2BJ7A 1P94A 2WVBA 2HZAA 1X93A 1IRQA 3FMTA 2AY0A 2CAJA 1MYLA 3VEAA 2WVCA 1NLAA 2CPGA 2WVFA 4D8JA 1BDVA 2BNWA 2BJ8A 2H1OE 4HV0A 1U9PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BSQ E;  1BAZ A;  1MYK A;  2KEL A;  1BDT A;  1EA4 A;  2JXI A;  2HZV A;  2CAD A;  3GXQ A;  2CAX A;  1Q5V A;  1B28 A;  1PAR A;  1B01 A;  2BA3 A;  4FXE A;  2WVE A;  3H87 C;  3QOQ A;  2BNZ A;  1ARR A;  2BJ3 A;  2K9I A;  2JXG A;  3FT7 A;  3LGH A;  3OD2 A;  2K1O A;  4ME7 E;  2GPE A;  2BJ1 A;  2K5J A;  2JXH A;  1MNT A;  3VEB A;  2K29 A;  2WVD A;  2K6L A;  3VW4 A;  1ARQ A;  1QTG A;  2BJ9 A;  2CA9 A;  2RBF A;  2BJ7 A;  1P94 A;  2WVB A;  2HZA A;  1X93 A;  1IRQ A;  3FMT A;  2AY0 A;  2CAJ A;  1MYL A;  3VEA A;  2WVC A;  1NLA A;  2CPG A;  2WVF A;  4D8J A;  1BDV A;  2BNW A;  2BJ8 A;  2H1O E;  4HV0 A;  1U9P A; 
#chains in the Genus database with same CATH topology
 1EA4 A;  2ADL A;  4MJW A;  1SH0 A;  2WVE A;  4LQ3 A;  2WK4 A;  2K9I A;  4NRT A;  2UUT A;  1Q16 A;  2K1O A;  3BSO A;  2JXH A;  2B43 A;  2CA9 A;  2BJ7 A;  1X93 A;  4D8J A;  1SH2 A;  4NRU A;  3VEA A;  1BDV A;  2WVC A;  3NAH A;  2H1O E;  2Q2K A;  4HV0 A;  1MYK A;  2KOE A;  1BDT A;  2H3A A;  3NO7 A;  3UR0 A;  1B28 A;  2A2B A;  1ARR A;  2BJ3 A;  4ME7 E;  2GPE A;  2BJ1 A;  3SFG A;  1ARQ A;  2KKE A;  2BJ9 A;  1SH3 A;  2WVB A;  2AY0 A;  2BNW A;  2CKW A;  2WVF A;  1U9P A;  3IR7 A;  1OG7 A;  3UQS A;  2AN7 A;  2CAD A;  2HZV A;  3G5O A;  2UUW A;  1B01 A;  4O4R A;  1SIW A;  3QOQ A;  3NNE A;  3QID A;  3BSN A;  2K5J A;  1MNT A;  2K6L A;  3NAI A;  3SFU A;  1QTG A;  4AAI A;  3FMT A;  2CAJ A;  1NLA A;  4LQ9 A;  1BAZ A;  2KEL A;  2BJ8 A;  2JXI A;  3GXQ A;  2CAX A;  3H5Y A;  2JBV A;  1Q5V A;  3H5X A;  1PAR A;  3UPF A;  2BA3 A;  4FXE A;  3H87 C;  2BNZ A;  4LRV A;  2JXG A;  3FT7 A;  3LGH A;  3OD2 A;  3VEB A;  3LJP A;  4QPX A;  2WVD A;  3VW4 A;  2RBF A;  1P94 A;  2HZA A;  1IRQ A;  2BSQ E;  1MYL A;  2CPG A;  1OHN A;  2K29 A; 
#chains in the Genus database with same CATH homology
 2BSQ E;  1BAZ A;  1MYK A;  2KEL A;  1BDT A;  1EA4 A;  2JXI A;  2HZV A;  2CAD A;  3GXQ A;  2CAX A;  1Q5V A;  1B28 A;  1PAR A;  1B01 A;  2BA3 A;  4FXE A;  2WVE A;  3H87 C;  3QOQ A;  2BNZ A;  1ARR A;  2BJ3 A;  2K9I A;  2JXG A;  3FT7 A;  3LGH A;  3OD2 A;  2K1O A;  4ME7 E;  2GPE A;  2BJ1 A;  2K5J A;  2JXH A;  1MNT A;  3VEB A;  2K29 A;  2WVD A;  2K6L A;  3VW4 A;  1ARQ A;  1QTG A;  2BJ9 A;  2CA9 A;  2RBF A;  2BJ7 A;  1P94 A;  2WVB A;  2HZA A;  1X93 A;  1IRQ A;  3FMT A;  2AY0 A;  2CAJ A;  1MYL A;  3VEA A;  2WVC A;  1NLA A;  2CPG A;  2WVF A;  4D8J A;  1BDV A;  2BNW A;  2BJ8 A;  2H1O E;  4HV0 A;  1U9P A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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