2H3PA

Crystal structure of murine carnitine acetyltransferase in complex with carnitine and acetyl-coa
Total Genus 218
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
218
sequence length
599
structure length
599
Chain Sequence
b'SHMAHQDALPRLPVPPLQQSLDYYLKALQPIVSEEEWAHTKQLVDEFQTSGGVGERLQKGLERRAKKMENWLSEWWLKTAYLQFRQPVVIYSSPGVILPKQDFVDLQGQLRFAAKLIEGVLDFKSMIDNETLPVEFLGGQPLCMNQYYQILSSCRVPGPKQDSVVNFLKSKRPPTHITVVHNYQFFELDVYHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESVNSIQKSIFTVCLDKQVPRVSDDVYRNHVAGQMLHGGGSKFNSGNRWFDKTLQFIVAEDGSCGMVYEHAAAEGPPIVALVDHVMEYTKKPELVRSPMVPLPMPKKLRFNITPEIKNDIEKAKQNLSIMIQDLDIMMLTFHHFGKDFPKSEKLSPDAFIQVALQLAYYRIYGQACATYESASLRMFHLGRTDTIRSASIDSLAFVKGMGDSTVPEQQKVELLRKAVQAHRAYTDRAIRGEAFDRHLLGLKLQAIEDLVSMPDIFMDTSYAIAMHFNLSTSQVPAKTDCVMFFGPVVPDGYGICYNPMEAHINFSVSAYNSCAETNAARMAHYLEKALLDMRTLLQNHPRAK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords carnitine acetyltransferase
publication title Crystal structures of murine carnitine acetyltransferase in ternary complexes with its substrates
pubmed doi rcsb
source organism Mus musculus
molecule tags Transferase
total genus 218
structure length 599
sequence length 599
chains with identical sequence B
ec nomenclature ec 2.3.1.7: Carnitine O-acetyltransferase.
pdb deposition date 2006-05-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.40 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 2h3pA01
3.30.559.70 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 2h3pA02
2FYOA 1T1UA 2H4TA 2FY2A 4EP9A 2FY4A 2FY3A 2H3WA 2H3UA 4EPHA 1NDBA 1T7OA 1NDIA 2DEBA 2RCUA 1Q6XA 1T7NA 4EYWA 2H3PA 1NM8A 2FW3A 1T7QA 2FY5A 1S5OA 1NDFA
chains in the Genus database with same CATH superfamily
3CLAA 4JN3A 1DPBA 4KECA 2E1UA 1NDIA 2DEBA 5DUAA 1QCAA 2RCUA 2VSQA 1CLAA 4G22A 4EYWA 4G0BA 1DPDA 1NOCB 2XHGA 1E2OA 1NM8A 5KJUA 2I9DA 2FW3A 1S5OA 1Q9JA 3FP0A 1XMDA 5T3EA 1XL8A 2FYOA 2H4TA 2FY2A 4EP9A 2FY4A 2XR7A 2FY3A 2CLAA 4HVMA 1Q23A 4JN5A 1DPCA 5KJVA 1XMCA 3MAEA 2H3PA 1PD5A 2RKVA 2BGHA 3B2SA 3U9BA 1T7QA 2E1TA 2II5A 4CLAA 2II4A 2H3UA 2RKTA 4EPHA 1NDBA 1T7OA 1EABA 1L5AA 5KJTA 2E1VA 4N72A 5FANA 1Q6XA 2ZBAA 1XL7A 1EACA 3B30A 1CIAA 2FY5A 5KJSA 1EAFA 2II3A 1SCZA 2JGPA 2IHWA 1NDFA 1C4TA 1T1UA 5FALA 3L60A 2H3WA 4KE4A 3FOTA 3U9FA 5KJWA 1T7NA 1EAAA 1EAEA 5DU9A 1EADA 4G2MA
chains in the Genus database with same CATH topology
2FYOA 1T1UA 4JN3A 2H4TA 2FY2A 4EP9A 2FY4A 2FY3A 2H3WA 2H3UA 4EPHA 1NDBA 3FOTA 1T7OA 4HVMA 4JN5A 1L5AA 1NDIA 1S5OA 2DEBA 5DUAA 2RCUA 1Q6XA 2VSQA 1T7NA 4EYWA 2XHGA 5DU9A 2H3PA 1NM8A 2FW3A 1T7QA 2FY5A 2JGPA 1Q9JA 3FP0A 1NDFA 5T3EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FYO A;  1T1U A;  2H4T A;  2FY2 A;  4EP9 A;  2FY4 A;  2FY3 A;  2H3W A;  2H3U A;  4EPH A;  1NDB A;  1T7O A;  1NDI A;  2DEB A;  2RCU A;  1Q6X A;  1T7N A;  4EYW A;  2H3P A;  1NM8 A;  2FW3 A;  1T7Q A;  2FY5 A;  1S5O A;  1NDF A; 
#chains in the Genus database with same CATH topology
 3CLA A;  4JN3 A;  1DPB A;  4KEC A;  2E1U A;  1NDI A;  2DEB A;  5DUA A;  1QCA A;  2RCU A;  2VSQ A;  1CLA A;  4G22 A;  4EYW A;  4G0B A;  1DPD A;  1NOC B;  2XHG A;  1E2O A;  1NM8 A;  5KJU A;  2I9D A;  2FW3 A;  1S5O A;  1Q9J A;  3FP0 A;  1XMD A;  5T3E A;  1XL8 A;  2FYO A;  2H4T A;  2FY2 A;  4EP9 A;  2FY4 A;  2XR7 A;  2FY3 A;  2CLA A;  4HVM A;  1Q23 A;  4JN5 A;  1DPC A;  5KJV A;  1XMC A;  3MAE A;  2H3P A;  1PD5 A;  2RKV A;  2BGH A;  3B2S A;  3U9B A;  1T7Q A;  2E1T A;  2II5 A;  4CLA A;  2II4 A;  2H3U A;  2RKT A;  4EPH A;  1NDB A;  1T7O A;  1EAB A;  1L5A A;  5KJT A;  2E1V A;  4N72 A;  5FAN A;  1Q6X A;  2ZBA A;  1XL7 A;  1EAC A;  3B30 A;  1CIA A;  2FY5 A;  5KJS A;  1EAF A;  2II3 A;  1SCZ A;  2JGP A;  2IHW A;  1NDF A;  1C4T A;  1T1U A;  5FAL A;  3L60 A;  2H3W A;  4KE4 A;  3FOT A;  3U9F A;  5KJW A;  1T7N A;  1EAA A;  1EAE A;  5DU9 A;  1EAD A;  4G2M A; 
#chains in the Genus database with same CATH homology
 2FYO A;  1T1U A;  4JN3 A;  2H4T A;  2FY2 A;  4EP9 A;  2FY4 A;  2FY3 A;  2H3W A;  2H3U A;  4EPH A;  1NDB A;  3FOT A;  1T7O A;  4HVM A;  4JN5 A;  1L5A A;  1NDI A;  1S5O A;  2DEB A;  5DUA A;  2RCU A;  1Q6X A;  2VSQ A;  1T7N A;  4EYW A;  2XHG A;  5DU9 A;  2H3P A;  1NM8 A;  2FW3 A;  1T7Q A;  2FY5 A;  2JGP A;  1Q9J A;  3FP0 A;  1NDF A;  5T3E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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