2H3PA

Crystal structure of murine carnitine acetyltransferase in complex with carnitine and acetyl-coa
Total Genus 218
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
218
sequence length
599
structure length
599
Chain Sequence
SHMAHQDALPRLPVPPLQQSLDYYLKALQPIVSEEEWAHTKQLVDEFQTSGGVGERLQKGLERRAKKMENWLSEWWLKTAYLQFRQPVVIYSSPGVILPKQDFVDLQGQLRFAAKLIEGVLDFKSMIDNETLPVEFLGGQPLCMNQYYQILSSCRVPGPKQDSVVNFLKSKRPPTHITVVHNYQFFELDVYHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESVNSIQKSIFTVCLDKQVPRVSDDVYRNHVAGQMLHGGGSKFNSGNRWFDKTLQFIVAEDGSCGMVYEHAAAEGPPIVALVDHVMEYTKKPELVRSPMVPLPMPKKLRFNITPEIKNDIEKAKQNLSIMIQDLDIMMLTFHHFGKDFPKSEKLSPDAFIQVALQLAYYRIYGQACATYESASLRMFHLGRTDTIRSASIDSLAFVKGMGDSTVPEQQKVELLRKAVQAHRAYTDRAIRGEAFDRHLLGLKLQAIEDLVSMPDIFMDTSYAIAMHFNLSTSQVPAKTDCVMFFGPVVPDGYGICYNPMEAHINFSVSAYNSCAETNAARMAHYLEKALLDMRTLLQNHPRAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords carnitine acetyltransferase
publication title Crystal structures of murine carnitine acetyltransferase in ternary complexes with its substrates
pubmed doi rcsb
source organism Mus musculus
molecule tags Transferase
total genus 218
structure length 599
sequence length 599
chains with identical sequence B
ec nomenclature ec 2.3.1.7: Carnitine O-acetyltransferase.
pdb deposition date 2006-05-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.40 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 2h3pA01
3.30.559.70 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 2h3pA02
2FY4A 2H3UA 2FY2A 4EP9A 4EYWA 1NDBA 1S5OA 2FYOA 2FY5A 1T7NA 2H4TA 2FY3A 4EPHA 2H3WA 1NM8A 1NDFA 2RCUA 1T1UA 1NDIA 1T7QA 2FW3A 2H3PA 1Q6XA 2DEBA 1T7OA
chains in the Genus database with same CATH superfamily
2E1TA 2H3UA 2FY2A 1L5AA 1DPBA 4KE4A 3FOTA 4EYWA 1EAAA 1EAFA 2FYOA 1NOCB 5KJSA 1EACA 4HVMA 1Q23A 2FY3A 2XR7A 1NDFA 4JN3A 1E2OA 2JGPA 1Q6XA 5T3EA 3U9FA 2CLAA 2II3A 1XL7A 5FALA 4JN5A 1QCAA 2E1UA 1XMCA 5FANA 3MAEA 4N72A 2H3WA 1NM8A 3B30A 4KECA 1T1UA 1NDIA 1T7QA 2FW3A 5DU9A 2BGHA 1C4TA 5KJWA 3U9BA 2FY4A 2XHGA 2ZBAA 2I9DA 4EP9A 1EADA 2VSQA 5KJTA 4G2MA 1NDBA 2II4A 5KJUA 2FY5A 3L60A 1EAEA 2H4TA 4G0BA 4EPHA 5KJVA 1XMDA 1DPCA 2II5A 4CLAA 2DEBA 2RKVA 3FP0A 2E1VA 3CLAA 3B2SA 2IHWA 4G22A 1S5OA 1SCZA 1EABA 1T7NA 1CLAA 1CIAA 1DPDA 1Q9JA 1XL8A 2RCUA 2H3PA 1PD5A 1T7OA 2RKTA 5DUAA
chains in the Genus database with same CATH topology
2FY4A 2H3UA 2FY2A 1L5AA 2XHGA 4EP9A 3FOTA 4JN5A 4EYWA 2VSQA 1NDBA 1S5OA 2FYOA 2FY5A 1T7NA 4HVMA 2H4TA 2FY3A 4EPHA 2H3WA 1Q9JA 1NM8A 1NDFA 2RCUA 1T1UA 1NDIA 1T7QA 2FW3A 5DU9A 2H3PA 4JN3A 2JGPA 1Q6XA 5T3EA 2DEBA 1T7OA 5DUAA 3FP0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FY4 A;  2H3U A;  2FY2 A;  4EP9 A;  4EYW A;  1NDB A;  1S5O A;  2FYO A;  2FY5 A;  1T7N A;  2H4T A;  2FY3 A;  4EPH A;  2H3W A;  1NM8 A;  1NDF A;  2RCU A;  1T1U A;  1NDI A;  1T7Q A;  2FW3 A;  2H3P A;  1Q6X A;  2DEB A;  1T7O A; 
#chains in the Genus database with same CATH topology
 2E1T A;  2H3U A;  2FY2 A;  1L5A A;  1DPB A;  4KE4 A;  3FOT A;  4EYW A;  1EAA A;  1EAF A;  2FYO A;  1NOC B;  5KJS A;  1EAC A;  4HVM A;  1Q23 A;  2FY3 A;  2XR7 A;  1NDF A;  4JN3 A;  1E2O A;  2JGP A;  1Q6X A;  5T3E A;  3U9F A;  2CLA A;  2II3 A;  1XL7 A;  5FAL A;  4JN5 A;  1QCA A;  2E1U A;  1XMC A;  5FAN A;  3MAE A;  4N72 A;  2H3W A;  1NM8 A;  3B30 A;  4KEC A;  1T1U A;  1NDI A;  1T7Q A;  2FW3 A;  5DU9 A;  2BGH A;  1C4T A;  5KJW A;  3U9B A;  2FY4 A;  2XHG A;  2ZBA A;  2I9D A;  4EP9 A;  1EAD A;  2VSQ A;  5KJT A;  4G2M A;  1NDB A;  2II4 A;  5KJU A;  2FY5 A;  3L60 A;  1EAE A;  2H4T A;  4G0B A;  4EPH A;  5KJV A;  1XMD A;  1DPC A;  2II5 A;  4CLA A;  2DEB A;  2RKV A;  3FP0 A;  2E1V A;  3CLA A;  3B2S A;  2IHW A;  4G22 A;  1S5O A;  1SCZ A;  1EAB A;  1T7N A;  1CLA A;  1CIA A;  1DPD A;  1Q9J A;  1XL8 A;  2RCU A;  2H3P A;  1PD5 A;  1T7O A;  2RKT A;  5DUA A; 
#chains in the Genus database with same CATH homology
 2FY4 A;  2H3U A;  2FY2 A;  1L5A A;  2XHG A;  4EP9 A;  3FOT A;  4JN5 A;  4EYW A;  2VSQ A;  1NDB A;  1S5O A;  2FYO A;  2FY5 A;  1T7N A;  4HVM A;  2H4T A;  2FY3 A;  4EPH A;  2H3W A;  1Q9J A;  1NM8 A;  1NDF A;  2RCU A;  1T1U A;  1NDI A;  1T7Q A;  2FW3 A;  5DU9 A;  2H3P A;  4JN3 A;  2JGP A;  1Q6X A;  5T3E A;  2DEB A;  1T7O A;  5DUA A;  3FP0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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