2H7ZA

Crystal structure of irditoxin
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
75
structure length
75
Chain Sequence
QAVGPPYTLCFECNRMTSSDCSTALRCYRGSCYTLYRPDENCELKWAVKGCAETCPTAGPNERVKCCRSPRCNDD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Irditoxin subunit A
publication title Irditoxin, a novel covalently linked heterodimeric three-finger toxin with high taxon-specific neurotoxicity.
pubmed doi rcsb
total genus 12
structure length 75
sequence length 75
ec nomenclature
pdb deposition date 2006-06-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 2h7zA00
1LXGA 3VTSA 1ERAA 3NEQA 2L03A 1TXAA 2H8UA 3FEVA 5DZ5A 3ERAA 3NDSA 1ES7B 3U73U 1FF4A 1HC9B 1IDIA 1UG4A 3EVSC 2HLRA 4OM4A 1COEA 2GOOC 1CXNA 2CTXA 4RUDA 1BTEA 2MJ0A 2QJBC 1NXBA 2UWRA 4FAOE 1F8UB 4AEAA 5IMTD 1FSSB 1IJCA 1CRFA 1W6BA 4BDTB 4EY8B 2MJ4A 3BT1U 1CTXA 1KBAA 1CDTA 1YWHA 1KC4A 1CDSA 6EBXA 1CVOA 4BIKB 1H0JA 1IDHA 2QJAC 1F94A 1QKEA 2H7ZB 5EBXA 3QB4B 1JE9A 2H64B 1DRSA 1IK8A 2PJYC 2MJYA 1CXOA 2H62C 1ABTA 1L4WA 3KFDI 4XJJA 1KL8A 1KBTA 2H62D 2H5FA 2K3GA 2CCXA 1CHVS 1ONJA 1RGJA 3KFDE 1CDQA 2QJ9C 1XT3A 1I02A 2LA1A 3EBXA 4UY2C 2I9BE 4DO8A 5IMYC 3HH7A 1LJZA 1M9ZA 4IYEA 3PLCA 1NEAA 4P7UA 2GOOB 1REWC 2N99A 1QM7A 2MUOA 3LAQU 1HC9A 1JGKA 1TGXA 2BHIA 1V6PA 2LCRA 1IDGA 1FASA 1G6MA 4ZQYA 1KS6A 2MFAA 2OFSA 5DU1A 1TXBA 1LX5B 1TFSA 2PJYB 1CDRA 1HOYA 4QTIU 1MR6A 4FAOC 3BT2U 2JQPA 2QC1A 4LFTA 1PLOA 2J8BA 1KFHA 2UX2A 1CODA 1ZADA 1KU6B 1B41B 2ABXA 2H64C 1KXIA 2H7ZA 1FFJA 1IQ9A 1NTNA 1KTZB 2CRTA 1ERGA 1IKCA 2ERAA 1CCQA 1S4YA 2JVEA 1FSCA 1HAAA 2CDXA 1NYUA 1CREA 1JBDA 2BTXA 5DO6A 1HAJA 2MHYA 3NH7A 1IDLA 2NBTA 1KBSA 2X8BB 2MUPA 4OM5A 1VB0A 1MAHF 2CRSA 3U74U 1NORA 2HLQA 4HQPF 1RL5A 2L5SA 1NTXA 1LSIA 1QKDA 1FRAA 2VLWA 1BXPA 1NYSA 1CB9A 1LXHA 2FD6U
chains in the Genus database with same CATH superfamily
1LXGA 3VTSA 1ERAA 3NEQA 2L03A 1TXAA 2H8UA 3FEVA 5DZ5A 3ERAA 3NDSA 1ES7B 3U73U 1FF4A 1HC9B 1IDIA 1UG4A 3EVSC 2HLRA 4OM4A 1COEA 2GOOC 1CXNA 2CTXA 4RUDA 1BTEA 2MJ0A 2QJBC 1NXBA 2UWRA 4FAOE 1F8UB 4AEAA 5IMTD 1FSSB 1IJCA 1CRFA 1W6BA 4BDTB 4EY8B 2MJ4A 3BT1U 1CTXA 1KBAA 1CDTA 1YWHA 1KC4A 1CDSA 6EBXA 1CVOA 4BIKB 1H0JA 1IDHA 2QJAC 1F94A 1QKEA 2H7ZB 5EBXA 3QB4B 1JE9A 2H64B 1DRSA 1IK8A 2PJYC 2MJYA 1CXOA 2H62C 1ABTA 1L4WA 3KFDI 4XJJA 1KL8A 1KBTA 2H62D 2H5FA 2K3GA 2CCXA 1CHVS 1ONJA 1RGJA 3KFDE 1CDQA 2QJ9C 1XT3A 1I02A 2LA1A 3EBXA 4UY2C 2I9BE 4DO8A 5IMYC 3HH7A 1LJZA 1M9ZA 4IYEA 3PLCA 1NEAA 4P7UA 2GOOB 1REWC 2N99A 1QM7A 2MUOA 3LAQU 1HC9A 1JGKA 1TGXA 2BHIA 1V6PA 2LCRA 1IDGA 1FASA 1G6MA 4ZQYA 1KS6A 2MFAA 2OFSA 5DU1A 1TXBA 1LX5B 1TFSA 2PJYB 1CDRA 1HOYA 4QTIU 1MR6A 4FAOC 3BT2U 2JQPA 2QC1A 4LFTA 1PLOA 2J8BA 1KFHA 2UX2A 1CODA 1ZADA 1KU6B 1B41B 2ABXA 2H64C 1KXIA 2H7ZA 1FFJA 1IQ9A 1NTNA 1KTZB 2CRTA 1ERGA 1IKCA 2ERAA 1CCQA 1S4YA 2JVEA 1FSCA 1HAAA 2CDXA 1NYUA 1CREA 1JBDA 2BTXA 5DO6A 1HAJA 2MHYA 3NH7A 1IDLA 2NBTA 1KBSA 2X8BB 2MUPA 4OM5A 1VB0A 1MAHF 2CRSA 3U74U 1NORA 2HLQA 4HQPF 1RL5A 2L5SA 1NTXA 1LSIA 1QKDA 1FRAA 2VLWA 1BXPA 4KSNA 1NYSA 1CB9A 1LXHA 2FD6U
chains in the Genus database with same CATH topology
1LXGA 3VTSA 1ERAA 3NEQA 2L03A 1TXAA 2H8UA 3FEVA 5DZ5A 3ERAA 3NDSA 1ES7B 3U73U 1FF4A 1HC9B 1IDIA 1UG4A 3EVSC 2HLRA 4OM4A 1COEA 2GOOC 1CXNA 2CTXA 4RUDA 1BTEA 2MJ0A 2QJBC 1NXBA 2UWRA 4FAOE 1F8UB 4AEAA 5IMTD 1FSSB 1IJCA 1CRFA 1W6BA 4BDTB 4EY8B 2MJ4A 3BT1U 1CTXA 1KBAA 1CDTA 1YWHA 1KC4A 1CDSA 6EBXA 1CVOA 4BIKB 1H0JA 1IDHA 2QJAC 1F94A 1QKEA 2H7ZB 5EBXA 3QB4B 1JE9A 2H64B 1DRSA 1IK8A 2PJYC 2MJYA 1CXOA 2H62C 1ABTA 1L4WA 3KFDI 4XJJA 1KL8A 1KBTA 2H62D 2H5FA 2K3GA 2CCXA 1CHVS 1ONJA 1RGJA 3KFDE 1CDQA 2QJ9C 1XT3A 1I02A 2LA1A 3EBXA 4UY2C 2I9BE 4DO8A 5IMYC 3HH7A 1LJZA 1M9ZA 4IYEA 3PLCA 1NEAA 4P7UA 2GOOB 1REWC 2N99A 1QM7A 2MUOA 3LAQU 1HC9A 1JGKA 1TGXA 2BHIA 1V6PA 2LCRA 1IDGA 1FASA 1G6MA 4ZQYA 1KS6A 2MFAA 2OFSA 5DU1A 1TXBA 1LX5B 1TFSA 2PJYB 1CDRA 1HOYA 4QTIU 1MR6A 4FAOC 3BT2U 2JQPA 2QC1A 4LFTA 1PLOA 2J8BA 1KFHA 2UX2A 1CODA 1ZADA 1KU6B 1B41B 2ABXA 2H64C 1KXIA 2H7ZA 1FFJA 1IQ9A 1NTNA 1KTZB 2CRTA 1ERGA 1IKCA 2ERAA 1CCQA 1S4YA 2JVEA 1FSCA 1HAAA 2CDXA 1NYUA 1CREA 1JBDA 2BTXA 5DO6A 1HAJA 2MHYA 3NH7A 1IDLA 2NBTA 1KBSA 2X8BB 2MUPA 4OM5A 1VB0A 1MAHF 2CRSA 3U74U 1NORA 2HLQA 4HQPF 1RL5A 2L5SA 1NTXA 1LSIA 1QKDA 1FRAA 2VLWA 1BXPA 4KSNA 1NYSA 1CB9A 1LXHA 2FD6U
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LXG A;  3VTS A;  1ERA A;  3NEQ A;  2L03 A;  1TXA A;  2H8U A;  3FEV A;  5DZ5 A;  3ERA A;  3NDS A;  1ES7 B;  3U73 U;  1FF4 A;  1HC9 B;  1IDI A;  1UG4 A;  3EVS C;  2HLR A;  4OM4 A;  1COE A;  2GOO C;  1CXN A;  2CTX A;  4RUD A;  1BTE A;  2MJ0 A;  2QJB C;  1NXB A;  2UWR A;  4FAO E;  1F8U B;  4AEA A;  5IMT D;  1FSS B;  1IJC A;  1CRF A;  1W6B A;  4BDT B;  4EY8 B;  2MJ4 A;  3BT1 U;  1CTX A;  1KBA A;  1CDT A;  1YWH A;  1KC4 A;  1CDS A;  6EBX A;  1CVO A;  4BIK B;  1H0J A;  1IDH A;  2QJA C;  1F94 A;  1QKE A;  2H7Z B;  5EBX A;  3QB4 B;  1JE9 A;  2H64 B;  1DRS A;  1IK8 A;  2PJY C;  2MJY A;  1CXO A;  2H62 C;  1ABT A;  1L4W A;  3KFD I;  4XJJ A;  1KL8 A;  1KBT A;  2H62 D;  2H5F A;  2K3G A;  2CCX A;  1CHV S;  1ONJ A;  1RGJ A;  3KFD E;  1CDQ A;  2QJ9 C;  1XT3 A;  1I02 A;  2LA1 A;  3EBX A;  4UY2 C;  2I9B E;  4DO8 A;  5IMY C;  3HH7 A;  1LJZ A;  1M9Z A;  4IYE A;  3PLC A;  1NEA A;  4P7U A;  2GOO B;  1REW C;  2N99 A;  1QM7 A;  2MUO A;  3LAQ U;  1HC9 A;  1JGK A;  1TGX A;  2BHI A;  1V6P A;  2LCR A;  1IDG A;  1FAS A;  1G6M A;  4ZQY A;  1KS6 A;  2MFA A;  2OFS A;  5DU1 A;  1TXB A;  1LX5 B;  1TFS A;  2PJY B;  1CDR A;  1HOY A;  4QTI U;  1MR6 A;  4FAO C;  3BT2 U;  2JQP A;  2QC1 A;  4LFT A;  1PLO A;  2J8B A;  1KFH A;  2UX2 A;  1COD A;  1ZAD A;  1KU6 B;  1B41 B;  2ABX A;  2H64 C;  1KXI A;  2H7Z A;  1FFJ A;  1IQ9 A;  1NTN A;  1KTZ B;  2CRT A;  1ERG A;  1IKC A;  2ERA A;  1CCQ A;  1S4Y A;  2JVE A;  1FSC A;  1HAA A;  2CDX A;  1NYU A;  1CRE A;  1JBD A;  2BTX A;  5DO6 A;  1HAJ A;  2MHY A;  3NH7 A;  1IDL A;  2NBT A;  1KBS A;  2X8B B;  2MUP A;  4OM5 A;  1VB0 A;  1MAH F;  2CRS A;  3U74 U;  1NOR A;  2HLQ A;  4HQP F;  1RL5 A;  2L5S A;  1NTX A;  1LSI A;  1QKD A;  1FRA A;  2VLW A;  1BXP A;  1NYS A;  1CB9 A;  1LXH A;  2FD6 U; 
#chains in the Genus database with same CATH topology
 1LXG A;  3VTS A;  1ERA A;  3NEQ A;  2L03 A;  1TXA A;  2H8U A;  3FEV A;  5DZ5 A;  3ERA A;  3NDS A;  1ES7 B;  3U73 U;  1FF4 A;  1HC9 B;  1IDI A;  1UG4 A;  3EVS C;  2HLR A;  4OM4 A;  1COE A;  2GOO C;  1CXN A;  2CTX A;  4RUD A;  1BTE A;  2MJ0 A;  2QJB C;  1NXB A;  2UWR A;  4FAO E;  1F8U B;  4AEA A;  5IMT D;  1FSS B;  1IJC A;  1CRF A;  1W6B A;  4BDT B;  4EY8 B;  2MJ4 A;  3BT1 U;  1CTX A;  1KBA A;  1CDT A;  1YWH A;  1KC4 A;  1CDS A;  6EBX A;  1CVO A;  4BIK B;  1H0J A;  1IDH A;  2QJA C;  1F94 A;  1QKE A;  2H7Z B;  5EBX A;  3QB4 B;  1JE9 A;  2H64 B;  1DRS A;  1IK8 A;  2PJY C;  2MJY A;  1CXO A;  2H62 C;  1ABT A;  1L4W A;  3KFD I;  4XJJ A;  1KL8 A;  1KBT A;  2H62 D;  2H5F A;  2K3G A;  2CCX A;  1CHV S;  1ONJ A;  1RGJ A;  3KFD E;  1CDQ A;  2QJ9 C;  1XT3 A;  1I02 A;  2LA1 A;  3EBX A;  4UY2 C;  2I9B E;  4DO8 A;  5IMY C;  3HH7 A;  1LJZ A;  1M9Z A;  4IYE A;  3PLC A;  1NEA A;  4P7U A;  2GOO B;  1REW C;  2N99 A;  1QM7 A;  2MUO A;  3LAQ U;  1HC9 A;  1JGK A;  1TGX A;  2BHI A;  1V6P A;  2LCR A;  1IDG A;  1FAS A;  1G6M A;  4ZQY A;  1KS6 A;  2MFA A;  2OFS A;  5DU1 A;  1TXB A;  1LX5 B;  1TFS A;  2PJY B;  1CDR A;  1HOY A;  4QTI U;  1MR6 A;  4FAO C;  3BT2 U;  2JQP A;  2QC1 A;  4LFT A;  1PLO A;  2J8B A;  1KFH A;  2UX2 A;  1COD A;  1ZAD A;  1KU6 B;  1B41 B;  2ABX A;  2H64 C;  1KXI A;  2H7Z A;  1FFJ A;  1IQ9 A;  1NTN A;  1KTZ B;  2CRT A;  1ERG A;  1IKC A;  2ERA A;  1CCQ A;  1S4Y A;  2JVE A;  1FSC A;  1HAA A;  2CDX A;  1NYU A;  1CRE A;  1JBD A;  2BTX A;  5DO6 A;  1HAJ A;  2MHY A;  3NH7 A;  1IDL A;  2NBT A;  1KBS A;  2X8B B;  2MUP A;  4OM5 A;  1VB0 A;  1MAH F;  2CRS A;  3U74 U;  1NOR A;  2HLQ A;  4HQP F;  1RL5 A;  2L5S A;  1NTX A;  1LSI A;  1QKD A;  1FRA A;  2VLW A;  1BXP A;  4KSN A;  1NYS A;  1CB9 A;  1LXH A;  2FD6 U; 
#chains in the Genus database with same CATH homology
 1LXG A;  3VTS A;  1ERA A;  3NEQ A;  2L03 A;  1TXA A;  2H8U A;  3FEV A;  5DZ5 A;  3ERA A;  3NDS A;  1ES7 B;  3U73 U;  1FF4 A;  1HC9 B;  1IDI A;  1UG4 A;  3EVS C;  2HLR A;  4OM4 A;  1COE A;  2GOO C;  1CXN A;  2CTX A;  4RUD A;  1BTE A;  2MJ0 A;  2QJB C;  1NXB A;  2UWR A;  4FAO E;  1F8U B;  4AEA A;  5IMT D;  1FSS B;  1IJC A;  1CRF A;  1W6B A;  4BDT B;  4EY8 B;  2MJ4 A;  3BT1 U;  1CTX A;  1KBA A;  1CDT A;  1YWH A;  1KC4 A;  1CDS A;  6EBX A;  1CVO A;  4BIK B;  1H0J A;  1IDH A;  2QJA C;  1F94 A;  1QKE A;  2H7Z B;  5EBX A;  3QB4 B;  1JE9 A;  2H64 B;  1DRS A;  1IK8 A;  2PJY C;  2MJY A;  1CXO A;  2H62 C;  1ABT A;  1L4W A;  3KFD I;  4XJJ A;  1KL8 A;  1KBT A;  2H62 D;  2H5F A;  2K3G A;  2CCX A;  1CHV S;  1ONJ A;  1RGJ A;  3KFD E;  1CDQ A;  2QJ9 C;  1XT3 A;  1I02 A;  2LA1 A;  3EBX A;  4UY2 C;  2I9B E;  4DO8 A;  5IMY C;  3HH7 A;  1LJZ A;  1M9Z A;  4IYE A;  3PLC A;  1NEA A;  4P7U A;  2GOO B;  1REW C;  2N99 A;  1QM7 A;  2MUO A;  3LAQ U;  1HC9 A;  1JGK A;  1TGX A;  2BHI A;  1V6P A;  2LCR A;  1IDG A;  1FAS A;  1G6M A;  4ZQY A;  1KS6 A;  2MFA A;  2OFS A;  5DU1 A;  1TXB A;  1LX5 B;  1TFS A;  2PJY B;  1CDR A;  1HOY A;  4QTI U;  1MR6 A;  4FAO C;  3BT2 U;  2JQP A;  2QC1 A;  4LFT A;  1PLO A;  2J8B A;  1KFH A;  2UX2 A;  1COD A;  1ZAD A;  1KU6 B;  1B41 B;  2ABX A;  2H64 C;  1KXI A;  2H7Z A;  1FFJ A;  1IQ9 A;  1NTN A;  1KTZ B;  2CRT A;  1ERG A;  1IKC A;  2ERA A;  1CCQ A;  1S4Y A;  2JVE A;  1FSC A;  1HAA A;  2CDX A;  1NYU A;  1CRE A;  1JBD A;  2BTX A;  5DO6 A;  1HAJ A;  2MHY A;  3NH7 A;  1IDL A;  2NBT A;  1KBS A;  2X8B B;  2MUP A;  4OM5 A;  1VB0 A;  1MAH F;  2CRS A;  3U74 U;  1NOR A;  2HLQ A;  4HQP F;  1RL5 A;  2L5S A;  1NTX A;  1LSI A;  1QKD A;  1FRA A;  2VLW A;  1BXP A;  4KSN A;  1NYS A;  1CB9 A;  1LXH A;  2FD6 U; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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