2H8CA

Structure of rusa d70n in complex with dna
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
117
structure length
117
Chain Sequence
NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRNLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title RusA Holliday junction resolvase: DNA complex structure--insights into selectivity and specificity.
pubmed doi rcsb
molecule keywords 5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*GP*T)-3'
source organism Escherichia coli
molecule tags Hydrolase/dna
total genus 31
structure length 117
sequence length 117
chains with identical sequence B, C, D
ec nomenclature ec 3.1.22.4: Crossover junction endodeoxyribonuclease.
pdb deposition date 2006-06-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05866 RusA Endodeoxyribonuclease RusA
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1330.70 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; Holliday junction resolvase RusA 2h8cA00
2H8CA 1Q8RA 2H8EA
chains in the Genus database with same CATH superfamily
4O2BA 3TD3A 3QUWA 3V4DA 1JY8A 3KE1A 3G71F 3Q8HA 1DBFA 4IIJB 3LWPC 2GVIA 4X1IA 4O4LA 2OZBA 3K12A 3QTYA 3FD6A 1VQ4F 3KIZA 1QAHA 2RB9A 3CMEF 1JJ2F 5G4VC 1X25A 1W57A 1JFFA 3HKCB 5IYZA 1TVKA 3CC2F 2UYKA 4BT7A 1R1MA 4R40B 3JARB 5J2TB 3VMFB 3LDTA 5MN6A 1UFYA 3CCRF 1ODEA 2CHTA 2GLZA 3LMEA 4G4WA 3CPWF 2UZHA 4BVTA 1IPAA 4BVRA 1XV2A 2HP0B 1KNJA 3CCEF 4I50B 3JAMM 3IKFA 1YI2F 3V7EA 5IJ9A 2YXZA 5FNVB 3NVKE 3JALB 5HP8A 2FGYA 1SA0B 5GAPK 3IMPA 3JVHA 3UT5A 3AGKA 5CA1B 1T0KB 4X1KA 1U3PA 4EI7A 1Q82H 3NK7A 5GINC 2QEXF 3ELCA 3HWUA 4BT4A 5JQGA 1COMA 4IHJA 3JAKB 3K2XA 3ON1A 3I3FA 3V3TA 2ZOVA 3LWOC 5EYPA 5HXUA 3CCMF 5LXTB 5FLXM 4NWOB 3N2KA 5JH7B 1RQ2A 1PXWA 3RYIB 3JATB 5JCOA 2AIZP 4YJ3A 1Q8RA 2Z01A 3DC2A 3F6MA 2HRUA 3VCZA 3WGJA 4B62A 4RQOA 4WBNA 1FFXA 3E20B 2LBWA 4U3JB 4DRXA 1W5FA 4EI9A 2VAWA 3RYFA 1K9MH 5HWEA 2Z1FA 4LCKA 1VQMF 4KWEA 5LOVA 3NMUC 3ZP7A 1VQ5F 3M84A 3F0GA 1T0AA 1S72F 2KGWA 5IT9M 1DT9A 2CVLA 1W5EA 3OW2F 4O4HB 3RA6A 4EB6B 5LP6A 3F0DA 5B8FA 3K14A 3OBYA 4TZZA 3E22A 4X1YB 5EAZA 4ZHQB 3CCJF 4DXDA 1H48A 2CZWA 3FPIA 4O4JB 3S0HA 3V7QA 3WJRA 4O2BB 3RYHB 1YGYA 4BY9D 3HJWC 3F0FA 5C8YB 3ERNA 2HQSC 2I6DA 2H8EA 2QTPA 3S02A 4X1IB 1ZWZA 4B46A 4LNUA 1CN7A 3RA5A 2BTOA 1VQKF 4F6RA 2LBXA 2OHWA 1SZQA 5KMGB 3KJJA 4G4ZA 1KNKA 4XCQA 1TUBA 1GZ0A 3VOBA 5CA0B 1VQPF 5IYZB 3WPWA 1H47A 1JD1A 5IJ0A 4TUYA 2HVYD 3CCQF 5ITZA 5J2UB 4BT3A 2L26A 3I7TA 3S03A 5GIPC 3JCMM 4RHAA 1GO0A 3CC4F 2QA4F 4M8IA 1W3EX 3WGMA 2VXYA 3HKEA 2WALA 2V9YA 3VTIC 5IJ9B 4I4TA 3J7AR 1W5AA 3ESJA 2UYNA 5CB4B 3FBAA 4BVQA 3HKBA 2HP3A 4TV9B 5GONB 3KJKA 2Z1UA 5EO3A 2OTJF 5JVDA 3VO8A 3IEWA 2MQEA 1W40A 5G4UC 1QU9A 1Q81H 4BT6A 3LWVC 4I55A 4C82A 5LYJB 3CCUF 3K0TA 3LFOA 3VYUC 2H6LA 1W2BF 3I55F 1Q86H 2FC3A 2UYJA 4HNAA 4ZHYB 1QD9A 4ZK7A 4C8GA 2Z1EA 3LWQC 4X20B 3CCSF 1VQNF 4IIJA 1X7OA 3JASB 3VIUA 1VQLF 5KX5B 4U39A 3MDOA 2ALEA 2CSLA 2AMTA 2LBTA 5BMVB 2KTVA 1NJIH 2HRYA 5HY4A 3HKDB 3HKCA 2BTUA 5JCOC 2PHNA 4ZI7B 1E7KA 1U43A 2DT4A 3G6EF 1YIJF 2HX0A 3WGLA 3RYCB 2Q1XA 2YYEA 4TV8B 1VQ9F 1M1KH 3JARA 3C8LA 4NQ3A 1YJ9F 3D00A 4YJ2B 4B5CA 3WXMB 5J2TA 1K73H 4BT2A 4G88A 1OAPA 4C4WC 1W42A 1VQ8F 2CW4A 3QHDA 2HP0A 3P4EA 2ZVYA 3WPXA 3N4ZA 4B45A 4ZOLA 4I50A 3M1XA 3J80M 1IV3A 5FNVA 3JALA 3CCVF 3CD6F 1SA0A 3JAWB 3I56F 4BVSA 3MQWA 5HP7A 2DYYA 5LP6C 1FSZA 2R6R1 3N2GB 1JN1A 3U0OA 5CA1A 5GIOC 3S0WA 1VQ6F 1XBIA 2Q1YA 4FFBB 3D54A 3JAKA 2W8BC 5LA6B 2ZAUA 3SIUA 4O4IB 2RHHA 5LXTA 5IJ0B 4O2AB 2UYPA 5JH7A 4EI8A 3RYIA 5GANK 3RE3A 3JATA 2G9IA 3TD5A 1YITF 5HXZA 4ZHWA 4U3JA 4O4LB 1FNKA 4X3LA 4PWTA 2IG8A 1W59A 1RLUA 3GTZA 3PAFA 3ZP4A 3VI6A 2AIFA 3BYQA 1GX1A 3CXCF 1JFFB 2ZF8A 1GO1A 1TVKB 2UYNB 4E6EA 2LCAA 2P6YA 2VAPA 2BTQB 2GZLA 3G4SF 3S06A 3CYQA 3VYSC 3P0ZA 5HY2A 2IQQA 5FJ4C 5HY1A 3CCLF 2EWCA 3C9TA 2RHLA 4O4HA 4EB6A 3ZO8A 3CC7F 1X52A 1VK3A 4ERHA 2B33A 1U40A 2ZODA 2VGNA 4X1YA 2CWJA 3CYPB 5AVMA 4ZHQA 1IV1A 3GYQA 3RYHA 2RHOA 4G4XA 5C8YA 3WGKA 2PMPA 3UT5B 4ZHVA 2KG4A 3VYTC 3P10A 4X1KB 5EZYA 1VQOF 3HTNA 3LYBA 4C8IA 1ONIA 3O85A 5JQGB 1J7HA 5DCVA 1VQ7F 2N48A 4IHJB 3NVIB 5KMGA 1YHQF 2CHSA 3EORA 5EYPB 1QVGF 1W55A 5CA0A 3N2KB 3WJQA 3C9UA 1FNJA 1Z5WA 4YJ3B 2F9ZC 5J2UA 3PLAC 1QVFF 2Z1TA 4WBNB 2NMUA 1FFXB 1KC8H 1XRGA 1CLIA 3CG6A 4DRXB 3NK6A 1VQVA 3E1YA 1KD1H 1YJNF 3RYFB 1VHAA 5LOVB 4ZOLB 1OFUA 3VOAA 3T80A 3SIVA 2VGMA 1RQ7A 1IV2A 5CB4A 1Z5VA 2OTMA 3CB2A 4TV9A 5LP6B 2HS3A 5EIBD 3D01A 5GONA 1W581 3WJPA 3M4SA 3F0EA 1Q7YH 2JNBA 3L7QA 1XHOA 1VH8A 3E22B 4NUTA 5MN5A 2IAFA 2OTLF 2HS0A 3MBMA 5LYJA 1CK2A 3MCQA 5MN4A 3FFMA 3J81M 4X20A 1RA4A 3DDNA 4X3MA 4G4YA 5HY0A 1M90H 2H8CA 3IEQA 1N8RH 4LNUB 3JASA 5KX5A 5EWRA 4F6RB 3B6NA 1KQSF 3WGNA 3ZOPA 5BMVA 1TUBB 2RHJA 4G4VA 3TD4A 1YJWF 2BO1A 2R751 3C9RA 3HKDA 4TUYB 4C8EA 5ITZB 1U3LA 3FD5A 3R0PA 4ZI7A 1IV4A 3C9SA 3RYCA 4TV8A 1RLGA 5A2QM 4YJ2A 2K1SA 1W41A 1W5BA 3KHNA 2KTUA 3HKEB 3CMAF 2HS4A 1NQ3A 4I4TB 3LWRC 5EB0A 1YQNA 4C81A 3HKBB 3HAXD 5EIBC 3JAWA 3GHZA 1H7MA 5EZYB 2QI2A 5JVDB 3N2GA 2VAMA 5EB1B 1K8AH 1UI9A 1PF5A 4I55B 1X7PA 4FFBA 3OONA 5LA6A 1NMUB 3IR9A 4BW0B 2ZVZA 4O4IA 1SDSA 3CPQA 3N4YA 4HNAB 4O4JA 3S0YA 4BT5A 4O2AA 3IKEA 2I6RA 3OBWA 3MCAB
chains in the Genus database with same CATH topology
2H8CA 1Q8RA 2H8EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2H8C A;  1Q8R A;  2H8E A; 
#chains in the Genus database with same CATH topology
 4O2B A;  3TD3 A;  3QUW A;  3V4D A;  1JY8 A;  3KE1 A;  3G71 F;  3Q8H A;  1DBF A;  4IIJ B;  3LWP C;  2GVI A;  4X1I A;  4O4L A;  2OZB A;  3K12 A;  3QTY A;  3FD6 A;  1VQ4 F;  3KIZ A;  1QAH A;  2RB9 A;  3CME F;  1JJ2 F;  5G4V C;  1X25 A;  1W57 A;  1JFF A;  3HKC B;  5IYZ A;  1TVK A;  3CC2 F;  2UYK A;  4BT7 A;  1R1M A;  4R40 B;  3JAR B;  5J2T B;  3VMF B;  3LDT A;  5MN6 A;  1UFY A;  3CCR F;  1ODE A;  2CHT A;  2GLZ A;  3LME A;  4G4W A;  3CPW F;  2UZH A;  4BVT A;  1IPA A;  4BVR A;  1XV2 A;  2HP0 B;  1KNJ A;  3CCE F;  4I50 B;  3JAM M;  3IKF A;  1YI2 F;  3V7E A;  5IJ9 A;  2YXZ A;  5FNV B;  3NVK E;  3JAL B;  5HP8 A;  2FGY A;  1SA0 B;  5GAP K;  3IMP A;  3JVH A;  3UT5 A;  3AGK A;  5CA1 B;  1T0K B;  4X1K A;  1U3P A;  4EI7 A;  1Q82 H;  3NK7 A;  5GIN C;  2QEX F;  3ELC A;  3HWU A;  4BT4 A;  5JQG A;  1COM A;  4IHJ A;  3JAK B;  3K2X A;  3ON1 A;  3I3F A;  3V3T A;  2ZOV A;  3LWO C;  5EYP A;  5HXU A;  3CCM F;  5LXT B;  5FLX M;  4NWO B;  3N2K A;  5JH7 B;  1RQ2 A;  1PXW A;  3RYI B;  3JAT B;  5JCO A;  2AIZ P;  4YJ3 A;  1Q8R A;  2Z01 A;  3DC2 A;  3F6M A;  2HRU A;  3VCZ A;  3WGJ A;  4B62 A;  4RQO A;  4WBN A;  1FFX A;  3E20 B;  2LBW A;  4U3J B;  4DRX A;  1W5F A;  4EI9 A;  2VAW A;  3RYF A;  1K9M H;  5HWE A;  2Z1F A;  4LCK A;  1VQM F;  4KWE A;  5LOV A;  3NMU C;  3ZP7 A;  1VQ5 F;  3M84 A;  3F0G A;  1T0A A;  1S72 F;  2KGW A;  5IT9 M;  1DT9 A;  2CVL A;  1W5E A;  3OW2 F;  4O4H B;  3RA6 A;  4EB6 B;  5LP6 A;  3F0D A;  5B8F A;  3K14 A;  3OBY A;  4TZZ A;  3E22 A;  4X1Y B;  5EAZ A;  4ZHQ B;  3CCJ F;  4DXD A;  1H48 A;  2CZW A;  3FPI A;  4O4J B;  3S0H A;  3V7Q A;  3WJR A;  4O2B B;  3RYH B;  1YGY A;  4BY9 D;  3HJW C;  3F0F A;  5C8Y B;  3ERN A;  2HQS C;  2I6D A;  2H8E A;  2QTP A;  3S02 A;  4X1I B;  1ZWZ A;  4B46 A;  4LNU A;  1CN7 A;  3RA5 A;  2BTO A;  1VQK F;  4F6R A;  2LBX A;  2OHW A;  1SZQ A;  5KMG B;  3KJJ A;  4G4Z A;  1KNK A;  4XCQ A;  1TUB A;  1GZ0 A;  3VOB A;  5CA0 B;  1VQP F;  5IYZ B;  3WPW A;  1H47 A;  1JD1 A;  5IJ0 A;  4TUY A;  2HVY D;  3CCQ F;  5ITZ A;  5J2U B;  4BT3 A;  2L26 A;  3I7T A;  3S03 A;  5GIP C;  3JCM M;  4RHA A;  1GO0 A;  3CC4 F;  2QA4 F;  4M8I A;  1W3E X;  3WGM A;  2VXY A;  3HKE A;  2WAL A;  2V9Y A;  3VTI C;  5IJ9 B;  4I4T A;  3J7A R;  1W5A A;  3ESJ A;  2UYN A;  5CB4 B;  3FBA A;  4BVQ A;  3HKB A;  2HP3 A;  4TV9 B;  5GON B;  3KJK A;  2Z1U A;  5EO3 A;  2OTJ F;  5JVD A;  3VO8 A;  3IEW A;  2MQE A;  1W40 A;  5G4U C;  1QU9 A;  1Q81 H;  4BT6 A;  3LWV C;  4I55 A;  4C82 A;  5LYJ B;  3CCU F;  3K0T A;  3LFO A;  3VYU C;  2H6L A;  1W2B F;  3I55 F;  1Q86 H;  2FC3 A;  2UYJ A;  4HNA A;  4ZHY B;  1QD9 A;  4ZK7 A;  4C8G A;  2Z1E A;  3LWQ C;  4X20 B;  3CCS F;  1VQN F;  4IIJ A;  1X7O A;  3JAS B;  3VIU A;  1VQL F;  5KX5 B;  4U39 A;  3MDO A;  2ALE A;  2CSL A;  2AMT A;  2LBT A;  5BMV B;  2KTV A;  1NJI H;  2HRY A;  5HY4 A;  3HKD B;  3HKC A;  2BTU A;  5JCO C;  2PHN A;  4ZI7 B;  1E7K A;  1U43 A;  2DT4 A;  3G6E F;  1YIJ F;  2HX0 A;  3WGL A;  3RYC B;  2Q1X A;  2YYE A;  4TV8 B;  1VQ9 F;  1M1K H;  3JAR A;  3C8L A;  4NQ3 A;  1YJ9 F;  3D00 A;  4YJ2 B;  4B5C A;  3WXM B;  5J2T A;  1K73 H;  4BT2 A;  4G88 A;  1OAP A;  4C4W C;  1W42 A;  1VQ8 F;  2CW4 A;  3QHD A;  2HP0 A;  3P4E A;  2ZVY A;  3WPX A;  3N4Z A;  4B45 A;  4ZOL A;  4I50 A;  3M1X A;  3J80 M;  1IV3 A;  5FNV A;  3JAL A;  3CCV F;  3CD6 F;  1SA0 A;  3JAW B;  3I56 F;  4BVS A;  3MQW A;  5HP7 A;  2DYY A;  5LP6 C;  1FSZ A;  2R6R 1;  3N2G B;  1JN1 A;  3U0O A;  5CA1 A;  5GIO C;  3S0W A;  1VQ6 F;  1XBI A;  2Q1Y A;  4FFB B;  3D54 A;  3JAK A;  2W8B C;  5LA6 B;  2ZAU A;  3SIU A;  4O4I B;  2RHH A;  5LXT A;  5IJ0 B;  4O2A B;  2UYP A;  5JH7 A;  4EI8 A;  3RYI A;  5GAN K;  3RE3 A;  3JAT A;  2G9I A;  3TD5 A;  1YIT F;  5HXZ A;  4ZHW A;  4U3J A;  4O4L B;  1FNK A;  4X3L A;  4PWT A;  2IG8 A;  1W59 A;  1RLU A;  3GTZ A;  3PAF A;  3ZP4 A;  3VI6 A;  2AIF A;  3BYQ A;  1GX1 A;  3CXC F;  1JFF B;  2ZF8 A;  1GO1 A;  1TVK B;  2UYN B;  4E6E A;  2LCA A;  2P6Y A;  2VAP A;  2BTQ B;  2GZL A;  3G4S F;  3S06 A;  3CYQ A;  3VYS C;  3P0Z A;  5HY2 A;  2IQQ A;  5FJ4 C;  5HY1 A;  3CCL F;  2EWC A;  3C9T A;  2RHL A;  4O4H A;  4EB6 A;  3ZO8 A;  3CC7 F;  1X52 A;  1VK3 A;  4ERH A;  2B33 A;  1U40 A;  2ZOD A;  2VGN A;  4X1Y A;  2CWJ A;  3CYP B;  5AVM A;  4ZHQ A;  1IV1 A;  3GYQ A;  3RYH A;  2RHO A;  4G4X A;  5C8Y A;  3WGK A;  2PMP A;  3UT5 B;  4ZHV A;  2KG4 A;  3VYT C;  3P10 A;  4X1K B;  5EZY A;  1VQO F;  3HTN A;  3LYB A;  4C8I A;  1ONI A;  3O85 A;  5JQG B;  1J7H A;  5DCV A;  1VQ7 F;  2N48 A;  4IHJ B;  3NVI B;  5KMG A;  1YHQ F;  2CHS A;  3EOR A;  5EYP B;  1QVG F;  1W55 A;  5CA0 A;  3N2K B;  3WJQ A;  3C9U A;  1FNJ A;  1Z5W A;  4YJ3 B;  2F9Z C;  5J2U A;  3PLA C;  1QVF F;  2Z1T A;  4WBN B;  2NMU A;  1FFX B;  1KC8 H;  1XRG A;  1CLI A;  3CG6 A;  4DRX B;  3NK6 A;  1VQV A;  3E1Y A;  1KD1 H;  1YJN F;  3RYF B;  1VHA A;  5LOV B;  4ZOL B;  1OFU A;  3VOA A;  3T80 A;  3SIV A;  2VGM A;  1RQ7 A;  1IV2 A;  5CB4 A;  1Z5V A;  2OTM A;  3CB2 A;  4TV9 A;  5LP6 B;  2HS3 A;  5EIB D;  3D01 A;  5GON A;  1W58 1;  3WJP A;  3M4S A;  3F0E A;  1Q7Y H;  2JNB A;  3L7Q A;  1XHO A;  1VH8 A;  3E22 B;  4NUT A;  5MN5 A;  2IAF A;  2OTL F;  2HS0 A;  3MBM A;  5LYJ A;  1CK2 A;  3MCQ A;  5MN4 A;  3FFM A;  3J81 M;  4X20 A;  1RA4 A;  3DDN A;  4X3M A;  4G4Y A;  5HY0 A;  1M90 H;  2H8C A;  3IEQ A;  1N8R H;  4LNU B;  3JAS A;  5KX5 A;  5EWR A;  4F6R B;  3B6N A;  1KQS F;  3WGN A;  3ZOP A;  5BMV A;  1TUB B;  2RHJ A;  4G4V A;  3TD4 A;  1YJW F;  2BO1 A;  2R75 1;  3C9R A;  3HKD A;  4TUY B;  4C8E A;  5ITZ B;  1U3L A;  3FD5 A;  3R0P A;  4ZI7 A;  1IV4 A;  3C9S A;  3RYC A;  4TV8 A;  1RLG A;  5A2Q M;  4YJ2 A;  2K1S A;  1W41 A;  1W5B A;  3KHN A;  2KTU A;  3HKE B;  3CMA F;  2HS4 A;  1NQ3 A;  4I4T B;  3LWR C;  5EB0 A;  1YQN A;  4C81 A;  3HKB B;  3HAX D;  5EIB C;  3JAW A;  3GHZ A;  1H7M A;  5EZY B;  2QI2 A;  5JVD B;  3N2G A;  2VAM A;  5EB1 B;  1K8A H;  1UI9 A;  1PF5 A;  4I55 B;  1X7P A;  4FFB A;  3OON A;  5LA6 A;  1NMU B;  3IR9 A;  4BW0 B;  2ZVZ A;  4O4I A;  1SDS A;  3CPQ A;  3N4Y A;  4HNA B;  4O4J A;  3S0Y A;  4BT5 A;  4O2A A;  3IKE A;  2I6R A;  3OBW A;  3MCA B; 
#chains in the Genus database with same CATH homology
 2H8C A;  1Q8R A;  2H8E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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