2H8CA

Structure of rusa d70n in complex with dna
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
117
structure length
117
Chain Sequence
NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRNLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords 5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*GP*T)-3'
publication title RusA Holliday junction resolvase: DNA complex structure--insights into selectivity and specificity.
pubmed doi rcsb
source organism Escherichia coli
total genus 31
structure length 117
sequence length 117
chains with identical sequence B, C, D
ec nomenclature ec 3.1.22.4: Crossover junction endodeoxyribonuclease.
pdb deposition date 2006-06-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05866 RusA Endodeoxyribonuclease RusA
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1330.70 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; Holliday junction resolvase RusA 2h8cA00
2H8EA 1Q8RA 2H8CA
chains in the Genus database with same CATH superfamily
3J80M 3HAXD 4TV8B 3NK7A 2KG4A 3KE1A 2UYKA 3TD4A 2WALA 3CPWF 2G9IA 2Z1FA 2HS0A 4F6RA 1S72F 1VQNF 4BY9D 2JNBA 3FBAA 2VAPA 3FPIA 2UYNB 3RYHA 1KC8H 3F6MA 4IHJB 1K9MH 2Q1XA 4B62A 4R40B 1SDSA 5IJ9B 4YJ3A 3N2GA 3S0WA 5FLXM 2KTVA 5KMGB 1VQLF 4G4VA 4BVSA 2B33A 3LWPC 3JARA 3CC4F 5CA0A 4ZHVA 4KWEA 5CA1B 4HNAB 4G4YA 4I55B 3CG6A 1W5EA 2FGYA 3ON1A 3S02A 3S06A 3WJQA 1K8AH 4C8EA 1YI2F 2W8BC 1KQSF 4FFBA 3VI6A 2L26A 3K14A 5CB4A 1VK3A 3D54A 2HS4A 3JATA 3B6NA 3GHZA 3WGKA 4M8IA 3KIZA 3K2XA 1KNJA 1GO0A 4G4WA 2Z01A 3R0PA 3E1YA 2CHTA 4TV9A 2OTJF 2HX0A 3FFMA 5BMVB 1K73H 5AVMA 5JH7B 1TVKA 4BVQA 5LXTA 3HKCA 3CCLF 1OAPA 4C8IA 1VQ4F 4DRXA 3V3TA 3RYCB 3N2KB 1FFXB 2YYEA 4ZHYB 2NMUA 1Z5VA 3I56F 3JASA 1XV2A 4ZI7B 2RHHA 3NMUC 3P10A 3EORA 3NVIB 1VQOF 1CK2A 1IV4A 1YJ9F 2ALEA 3RYFB 5LP6A 5J2UA 1IV3A 3JAKB 3DDNA 3P0ZA 5ITZB 5FNVA 1YJWF 3I3FA 5IYZA 4YJ2A 3F0DA 1VQVA 1M1KH 4X1IA 1H48A 2RHLA 3CCEF 1YJNF 2AIFA 2H8EA 3RA6A 5C8YB 5DCVA 2HRUA 2BTUA 3ELCA 4X1KA 3WPWA 1X52A 2EWCA 3JVHA 4B45A 3CPQA 1YGYA 4BW0B 2CWJA 1PXWA 3CCRF 5MN5A 2AMTA 3L7QA 2V9YA 5LOVB 2RHJA 5GIOC 3SIUA 1FNKA 3N2GB 2ZOVA 1T0AA 3LFOA 4B5CA 3VOBA 4NUTA 4ZHQB 2GZLA 4X3MA 5LYJA 3KJJA 4TUYB 3ERNA 3FD6A 3ZO8A 3G71F 1W55A 2K1SA 5B8FA 1XRGA 3HWUA 1W581 1VQPF 2MQEA 2KGWA 3UT5A 3CC7F 4O4HB 4IIJB 4X1YA 3CCUF 4FFBB 2OHWA 4LNUA 5EYPB 3E20B 5JVDB 3F0GA 4EB6B 3JATB 1FNJA 5GONA 4RQOA 4ZOLB 2LBXA 2HP0B 3TD3A 2GVIA 4O2AA 5G4UC 3MCQA 1VHAA 3M84A 4X20A 1VH8A 3CCMF 5GIPC 2RB9A 1OFUA 1RLUA 5J2TB 5G4VC 1KNKA 2R751 3HKBA 1TUBB 5MN4A 5LXTB 3C9SA 1R1MA 3C9RA 2UZHA 3LDTA 1RA4A 3HKDA 3CCJF 3IMPA 5EIBC 5JQGA 1SA0A 4U3JB 1FSZA 4U39A 3LYBA 3RE3A 2HS3A 4NQ3A 4WBNA 1ODEA 4O4IA 3E22A 1X7PA 3M4SA 4ZK7A 3I55F 3CCVF 3CYQA 5HWEA 4O4LA 5FJ4C 1W41A 3HKEB 2QI2A 3MQWA 1T0KB 1RQ2A 2UYJA 5J2UB 3GTZA 5HXUA 3JALA 2PHNA 5IJ0B 3RYIB 2VAWA 3LWVC 3K12A 1YIJF 1IV2A 1CLIA 2BO1A 3CB2A 3QHDA 2CW4A 4O4JA 4DXDA 1XBIA 3IR9A 4XCQA 3U0OA 5GANK 2CSLA 3CCQF 4O2BA 1U40A 4TV8A 4NWOB 3JAWB 4X1KB 2UYPA 3N4YA 1Z5WA 3IEQA 3WPXA 2RHOA 3S0YA 5LA6B 5IJ9A 2OTLF 3CC2F 2HRYA 2Q1YA 2LCAA 4I4TA 3WJPA 3CYPB 3VYTC 3KJKA 4HNAA 5CA1A 4I55A 3FD5A 1NMUB 4C82A 3WGLA 5KX5B 2CZWA 2HVYD 2IG8A 1SZQA 1YITF 3VCZA 1DT9A 1VQ8F 3CMAF 4I50A 1Q7YH 5HY4A 3CMEF 1H47A 4F6RB 4G4XA 2F9ZC 4BT5A 2AIZP 3RYHB 5BMVA 3LWOC 2ZF8A 5JH7A 4ERHA 2I6DA 1QVFF 4YJ3B 3PAFA 3VTIC 3N2KA 2KTUA 1FFXA 2ZODA 1H7MA 3HKDB 3JARB 5CA0B 2DYYA 4BT6A 3VIUA 4ZI7A 2VXYA 2QA4F 4WBNB 1W3EX 4O4IB 3E22B 1ZWZA 5GAPK 1CN7A 1U43A 2R6R1 2OTMA 3RYFA 3NVKE 4BVRA 3OBWA 4TZZA 5CB4B 1GO1A 4EI9A 3GYQA 3V7QA 5EIBD 5ITZA 2IQQA 2ZVYA 1JFFA 4C8GA 2Z1EA 3NK6A 3VOAA 1U3PA 2HP3A 4TV9B 3D01A 1VQ7F 2BTQB 1VQ5F 3J7AR 5EZYA 4BT4A 1TVKB 5HY1A 3HKCB 2CHSA 3WJRA 5C8YA 2IAFA 2PMPA 3CXCF 3LMEA 3IEWA 3JCMM 5JCOC 4O2BB 1UFYA 4BVTA 1VQMF 4BT2A 3QTYA 3SIVA 2OZBA 2YXZA 4DRXB 1JY8A 3IKEA 3N4ZA 1NJIH 5MN6A 3JASB 3MDOA 2I6RA 1X7OA 3VYSC 3ZOPA 3J81M 1W5AA 5LOVA 3G6EF 1GX1A 1GZ0A 5LP6B 2ZAUA 3C8LA 2BTOA 1QU9A 2VAMA 3QUWA 4I4TB 3T80A 3WXMB 4ZHQA 3D00A 1W2BF 3VMFB 3VYUC 5FNVB 3WGNA 4C4WC 5IYZB 4TUYA 4YJ2B 1Q82H 1E7KA 4X1IB 2DT4A 1J7HA 1QAHA 4O4HA 3G4SF 3I7TA 4IIJA 5HY0A 5EYPA 4G88A 5JVDA 4I50B 4EB6A 4C81A 1IPAA 1W59A 4ZOLA 1VQ9F 1QVGF 2HP0A 3KHNA 3F0FA 2UYNA 2HQSC 1W42A 3ESJA 4IHJA 5J2TA 1PF5A 3DC2A 3RA5A 5HY2A 1JJ2F 1VQ6F 1Q86H 1TUBA 3MBMA 1YQNA 5KMGA 3VO8A 3MCAB 3LWQC 4G4ZA 5HP8A 3V7EA 1X25A 3PLAC 1QD9A 1JD1A 4U3JA 2LBWA 5IT9M 1W57A 1W40A 3BYQA 1N8RH 1RLGA 4B46A 5LYJB 4LCKA 5EAZA 4ZHWA 2QEXF 5EWRA 1ONIA 2VGMA 1M90H 3TD5A 2VGNA 3HKEA 1JN1A 3UT5B 2H6LA 3WGMA 1Q81H 4BT3A 3C9UA 4X1YB 3WGJA 4LNUB 3OONA 5HXZA 5IJ0A 3RYIA 2CVLA 5HP7A 5GONB 3V4DA 5JCOA 3HTNA 3S0HA 1JFFB 4O2AB 4EI7A 1W5BA 3HJWC 2Z1UA 4X20B 3AGKA 3Q8HA 3JAMM 3HKBB 5EZYB 1VQKF 2P6YA 4PWTA 3IKFA 1U3LA 3RYCA 1KD1H 2Z1TA 5GINC 1UI9A 4EI8A 1RQ7A 3JAWA 3C9TA 5EB1B 3OBYA 3K0TA 5JQGB 1SA0B 3CD6F 3LWRC 3ZP4A 4X3LA 5LA6A 1DBFA 4O4LB 1YHQF 1NQ3A 3P4EA 2ZVZA 1COMA 3JAKA 1IV1A 5EO3A 2FC3A 4E6EA 2QTPA 1W5FA 2LBTA 3S03A 3JALB 2H8CA 4BT7A 3O85A 3OW2F 5A2QM 5LP6C 5KX5A 2N48A 4O4JB 1XHOA 4RHAA 3ZP7A 3F0EA 3M1XA 5EB0A 2GLZA 3CCSF 1Q8RA
chains in the Genus database with same CATH topology
2H8EA 1Q8RA 2H8CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2H8E A;  1Q8R A;  2H8C A; 
#chains in the Genus database with same CATH topology
 3J80 M;  3HAX D;  4TV8 B;  3NK7 A;  2KG4 A;  3KE1 A;  2UYK A;  3TD4 A;  2WAL A;  3CPW F;  2G9I A;  2Z1F A;  2HS0 A;  4F6R A;  1S72 F;  1VQN F;  4BY9 D;  2JNB A;  3FBA A;  2VAP A;  3FPI A;  2UYN B;  3RYH A;  1KC8 H;  3F6M A;  4IHJ B;  1K9M H;  2Q1X A;  4B62 A;  4R40 B;  1SDS A;  5IJ9 B;  4YJ3 A;  3N2G A;  3S0W A;  5FLX M;  2KTV A;  5KMG B;  1VQL F;  4G4V A;  4BVS A;  2B33 A;  3LWP C;  3JAR A;  3CC4 F;  5CA0 A;  4ZHV A;  4KWE A;  5CA1 B;  4HNA B;  4G4Y A;  4I55 B;  3CG6 A;  1W5E A;  2FGY A;  3ON1 A;  3S02 A;  3S06 A;  3WJQ A;  1K8A H;  4C8E A;  1YI2 F;  2W8B C;  1KQS F;  4FFB A;  3VI6 A;  2L26 A;  3K14 A;  5CB4 A;  1VK3 A;  3D54 A;  2HS4 A;  3JAT A;  3B6N A;  3GHZ A;  3WGK A;  4M8I A;  3KIZ A;  3K2X A;  1KNJ A;  1GO0 A;  4G4W A;  2Z01 A;  3R0P A;  3E1Y A;  2CHT A;  4TV9 A;  2OTJ F;  2HX0 A;  3FFM A;  5BMV B;  1K73 H;  5AVM A;  5JH7 B;  1TVK A;  4BVQ A;  5LXT A;  3HKC A;  3CCL F;  1OAP A;  4C8I A;  1VQ4 F;  4DRX A;  3V3T A;  3RYC B;  3N2K B;  1FFX B;  2YYE A;  4ZHY B;  2NMU A;  1Z5V A;  3I56 F;  3JAS A;  1XV2 A;  4ZI7 B;  2RHH A;  3NMU C;  3P10 A;  3EOR A;  3NVI B;  1VQO F;  1CK2 A;  1IV4 A;  1YJ9 F;  2ALE A;  3RYF B;  5LP6 A;  5J2U A;  1IV3 A;  3JAK B;  3DDN A;  3P0Z A;  5ITZ B;  5FNV A;  1YJW F;  3I3F A;  5IYZ A;  4YJ2 A;  3F0D A;  1VQV A;  1M1K H;  4X1I A;  1H48 A;  2RHL A;  3CCE F;  1YJN F;  2AIF A;  2H8E A;  3RA6 A;  5C8Y B;  5DCV A;  2HRU A;  2BTU A;  3ELC A;  4X1K A;  3WPW A;  1X52 A;  2EWC A;  3JVH A;  4B45 A;  3CPQ A;  1YGY A;  4BW0 B;  2CWJ A;  1PXW A;  3CCR F;  5MN5 A;  2AMT A;  3L7Q A;  2V9Y A;  5LOV B;  2RHJ A;  5GIO C;  3SIU A;  1FNK A;  3N2G B;  2ZOV A;  1T0A A;  3LFO A;  4B5C A;  3VOB A;  4NUT A;  4ZHQ B;  2GZL A;  4X3M A;  5LYJ A;  3KJJ A;  4TUY B;  3ERN A;  3FD6 A;  3ZO8 A;  3G71 F;  1W55 A;  2K1S A;  5B8F A;  1XRG A;  3HWU A;  1W58 1;  1VQP F;  2MQE A;  2KGW A;  3UT5 A;  3CC7 F;  4O4H B;  4IIJ B;  4X1Y A;  3CCU F;  4FFB B;  2OHW A;  4LNU A;  5EYP B;  3E20 B;  5JVD B;  3F0G A;  4EB6 B;  3JAT B;  1FNJ A;  5GON A;  4RQO A;  4ZOL B;  2LBX A;  2HP0 B;  3TD3 A;  2GVI A;  4O2A A;  5G4U C;  3MCQ A;  1VHA A;  3M84 A;  4X20 A;  1VH8 A;  3CCM F;  5GIP C;  2RB9 A;  1OFU A;  1RLU A;  5J2T B;  5G4V C;  1KNK A;  2R75 1;  3HKB A;  1TUB B;  5MN4 A;  5LXT B;  3C9S A;  1R1M A;  3C9R A;  2UZH A;  3LDT A;  1RA4 A;  3HKD A;  3CCJ F;  3IMP A;  5EIB C;  5JQG A;  1SA0 A;  4U3J B;  1FSZ A;  4U39 A;  3LYB A;  3RE3 A;  2HS3 A;  4NQ3 A;  4WBN A;  1ODE A;  4O4I A;  3E22 A;  1X7P A;  3M4S A;  4ZK7 A;  3I55 F;  3CCV F;  3CYQ A;  5HWE A;  4O4L A;  5FJ4 C;  1W41 A;  3HKE B;  2QI2 A;  3MQW A;  1T0K B;  1RQ2 A;  2UYJ A;  5J2U B;  3GTZ A;  5HXU A;  3JAL A;  2PHN A;  5IJ0 B;  3RYI B;  2VAW A;  3LWV C;  3K12 A;  1YIJ F;  1IV2 A;  1CLI A;  2BO1 A;  3CB2 A;  3QHD A;  2CW4 A;  4O4J A;  4DXD A;  1XBI A;  3IR9 A;  4XCQ A;  3U0O A;  5GAN K;  2CSL A;  3CCQ F;  4O2B A;  1U40 A;  4TV8 A;  4NWO B;  3JAW B;  4X1K B;  2UYP A;  3N4Y A;  1Z5W A;  3IEQ A;  3WPX A;  2RHO A;  3S0Y A;  5LA6 B;  5IJ9 A;  2OTL F;  3CC2 F;  2HRY A;  2Q1Y A;  2LCA A;  4I4T A;  3WJP A;  3CYP B;  3VYT C;  3KJK A;  4HNA A;  5CA1 A;  4I55 A;  3FD5 A;  1NMU B;  4C82 A;  3WGL A;  5KX5 B;  2CZW A;  2HVY D;  2IG8 A;  1SZQ A;  1YIT F;  3VCZ A;  1DT9 A;  1VQ8 F;  3CMA F;  4I50 A;  1Q7Y H;  5HY4 A;  3CME F;  1H47 A;  4F6R B;  4G4X A;  2F9Z C;  4BT5 A;  2AIZ P;  3RYH B;  5BMV A;  3LWO C;  2ZF8 A;  5JH7 A;  4ERH A;  2I6D A;  1QVF F;  4YJ3 B;  3PAF A;  3VTI C;  3N2K A;  2KTU A;  1FFX A;  2ZOD A;  1H7M A;  3HKD B;  3JAR B;  5CA0 B;  2DYY A;  4BT6 A;  3VIU A;  4ZI7 A;  2VXY A;  2QA4 F;  4WBN B;  1W3E X;  4O4I B;  3E22 B;  1ZWZ A;  5GAP K;  1CN7 A;  1U43 A;  2R6R 1;  2OTM A;  3RYF A;  3NVK E;  4BVR A;  3OBW A;  4TZZ A;  5CB4 B;  1GO1 A;  4EI9 A;  3GYQ A;  3V7Q A;  5EIB D;  5ITZ A;  2IQQ A;  2ZVY A;  1JFF A;  4C8G A;  2Z1E A;  3NK6 A;  3VOA A;  1U3P A;  2HP3 A;  4TV9 B;  3D01 A;  1VQ7 F;  2BTQ B;  1VQ5 F;  3J7A R;  5EZY A;  4BT4 A;  1TVK B;  5HY1 A;  3HKC B;  2CHS A;  3WJR A;  5C8Y A;  2IAF A;  2PMP A;  3CXC F;  3LME A;  3IEW A;  3JCM M;  5JCO C;  4O2B B;  1UFY A;  4BVT A;  1VQM F;  4BT2 A;  3QTY A;  3SIV A;  2OZB A;  2YXZ A;  4DRX B;  1JY8 A;  3IKE A;  3N4Z A;  1NJI H;  5MN6 A;  3JAS B;  3MDO A;  2I6R A;  1X7O A;  3VYS C;  3ZOP A;  3J81 M;  1W5A A;  5LOV A;  3G6E F;  1GX1 A;  1GZ0 A;  5LP6 B;  2ZAU A;  3C8L A;  2BTO A;  1QU9 A;  2VAM A;  3QUW A;  4I4T B;  3T80 A;  3WXM B;  4ZHQ A;  3D00 A;  1W2B F;  3VMF B;  3VYU C;  5FNV B;  3WGN A;  4C4W C;  5IYZ B;  4TUY A;  4YJ2 B;  1Q82 H;  1E7K A;  4X1I B;  2DT4 A;  1J7H A;  1QAH A;  4O4H A;  3G4S F;  3I7T A;  4IIJ A;  5HY0 A;  5EYP A;  4G88 A;  5JVD A;  4I50 B;  4EB6 A;  4C81 A;  1IPA A;  1W59 A;  4ZOL A;  1VQ9 F;  1QVG F;  2HP0 A;  3KHN A;  3F0F A;  2UYN A;  2HQS C;  1W42 A;  3ESJ A;  4IHJ A;  5J2T A;  1PF5 A;  3DC2 A;  3RA5 A;  5HY2 A;  1JJ2 F;  1VQ6 F;  1Q86 H;  1TUB A;  3MBM A;  1YQN A;  5KMG A;  3VO8 A;  3MCA B;  3LWQ C;  4G4Z A;  5HP8 A;  3V7E A;  1X25 A;  3PLA C;  1QD9 A;  1JD1 A;  4U3J A;  2LBW A;  5IT9 M;  1W57 A;  1W40 A;  3BYQ A;  1N8R H;  1RLG A;  4B46 A;  5LYJ B;  4LCK A;  5EAZ A;  4ZHW A;  2QEX F;  5EWR A;  1ONI A;  2VGM A;  1M90 H;  3TD5 A;  2VGN A;  3HKE A;  1JN1 A;  3UT5 B;  2H6L A;  3WGM A;  1Q81 H;  4BT3 A;  3C9U A;  4X1Y B;  3WGJ A;  4LNU B;  3OON A;  5HXZ A;  5IJ0 A;  3RYI A;  2CVL A;  5HP7 A;  5GON B;  3V4D A;  5JCO A;  3HTN A;  3S0H A;  1JFF B;  4O2A B;  4EI7 A;  1W5B A;  3HJW C;  2Z1U A;  4X20 B;  3AGK A;  3Q8H A;  3JAM M;  3HKB B;  5EZY B;  1VQK F;  2P6Y A;  4PWT A;  3IKF A;  1U3L A;  3RYC A;  1KD1 H;  2Z1T A;  5GIN C;  1UI9 A;  4EI8 A;  1RQ7 A;  3JAW A;  3C9T A;  5EB1 B;  3OBY A;  3K0T A;  5JQG B;  1SA0 B;  3CD6 F;  3LWR C;  3ZP4 A;  4X3L A;  5LA6 A;  1DBF A;  4O4L B;  1YHQ F;  1NQ3 A;  3P4E A;  2ZVZ A;  1COM A;  3JAK A;  1IV1 A;  5EO3 A;  2FC3 A;  4E6E A;  2QTP A;  1W5F A;  2LBT A;  3S03 A;  3JAL B;  2H8C A;  4BT7 A;  3O85 A;  3OW2 F;  5A2Q M;  5LP6 C;  5KX5 A;  2N48 A;  4O4J B;  1XHO A;  4RHA A;  3ZP7 A;  3F0E A;  3M1X A;  5EB0 A;  2GLZ A;  3CCS F;  1Q8R A; 
#chains in the Genus database with same CATH homology
 2H8E A;  1Q8R A;  2H8C A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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