2H8CA

Structure of rusa d70n in complex with dna
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
117
structure length
117
Chain Sequence
NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRNLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*GP*T)-3'
publication title RusA Holliday junction resolvase: DNA complex structure--insights into selectivity and specificity.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Hydrolase/dna
total genus 31
structure length 117
sequence length 117
chains with identical sequence B, C, D
ec nomenclature ec 3.1.22.4: Crossover junction endodeoxyribonuclease.
pdb deposition date 2006-06-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05866 RusA Endodeoxyribonuclease RusA
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1330.70 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; Holliday junction resolvase RusA 2h8cA00
2H8CA 2H8EA 1Q8RA
chains in the Genus database with same CATH superfamily
1X7OA 3FD6A 3S0WA 2N48A 2L26A 3JALB 1W2BF 5GANK 2RHJA 1SA0B 1W41A 3N2GB 3CCRF 2ZOVA 4YJ3A 3KJJA 3CCUF 5CA1B 4TUYA 1RQ2A 5GONA 3RYCA 3N4ZA 1K8AH 4LNUB 2QI2A 2BTQB 3QUWA 3K12A 4NQ3A 1W55A 2AMTA 2IQQA 3LMEA 3S02A 4ERHA 3RA6A 1DT9A 3CD6F 3Q8HA 2H6LA 4BT3A 2OHWA 3E22A 1JY8A 2I6RA 4B5CA 1GX1A 1U3LA 2YYEA 3HKDB 2RB9A 5EB0A 4IIJB 3OBYA 3LWRC 1W5EA 3I56F 5KMGB 3WGNA 4BT5A 5GIPC 5EZYB 3WGKA 2OTMA 4ZOLB 3JARB 1W5AA 3UT5B 2LCAA 4PWTA 5JVDB 3RYHA 1YI2F 3IEQA 4WBNB 1YIJF 1IV1A 1YJNF 3P0ZA 1ODEA 4KWEA 5KX5A 2CW4A 3O85A 3V7EA 4M8IA 3F0DA 3TD5A 1Z5VA 4IHJB 2K1SA 3LWQC 4G4YA 2OTJF 3ESJA 1QU9A 5A2QM 1TUBB 1NJIH 4R40B 3HKBB 2CZWA 5MN4A 3ZO8A 2EWCA 4EB6A 5JH7A 4O4LB 5HWEA 4O4HB 3RYFB 1K9MH 3SIUA 3OBWA 4X1YB 3VYUC 3CB2A 1CK2A 1SDSA 3ZP4A 1S72F 3C9UA 2UYNB 1ZWZA 5EWRA 1VH8A 3PAFA 3CCVF 1TVKB 4G4WA 1IV2A 1VQPF 2V9YA 4YJ2A 2ALEA 5IJ9B 5HY2A 3IEWA 4X1IA 1VQOF 2CHSA 1YJ9F 4TZZA 2AIZP 4C8GA 2ZODA 3CCMF 4I55A 5BMVB 2P6YA 1M90H 4ZHYB 4TV9A 4FFBA 3WGLA 1JFFA 2JNBA 4I4TB 2Z1FA 3IKEA 1NQ3A 1Z5WA 3NK6A 3IKFA 2GVIA 2MQEA 4TUYB 2YXZA 1VQ8F 4X3MA 3HTNA 4BVQA 2KTVA 5G4UC 3CCQF 3FD5A 1U3PA 5MN5A 3MBMA 2G9IA 1VQVA 4O4IA 4X1KB 3JAKA 3E22B 5J2UB 5LXTB 1VHAA 2HX0A 2R6R1 3N2KA 4ZHQA 1FNKA 3JVHA 3TD4A 3P4EA 3RE3A 1W581 5CB4B 5G4VC 3V4DA 2VAPA 3CG6A 3CCEF 1JJ2F 1GO1A 4TV8A 3J81M 1W57A 2KTUA 5LA6A 3WGMA 4BT2A 1IPAA 4O2BA 1U40A 4F6RA 3LDTA 3JASA 3V3TA 2VAWA 3FPIA 3IR9A 3C9RA 4B62A 5KX5B 2CSLA 3E20B 4NWOB 4BVRA 2Z01A 3SIVA 2OZBA 3C9TA 2UZHA 4HNAA 2ZVZA 2H8CA 2Q1XA 3HKCB 1FFXA 2HP0B 3D54A 2FGYA 5JCOA 3LYBA 3FBAA 1W3EX 4ZK7A 2HRUA 5J2TB 4LCKA 4B45A 1YITF 3JATB 4EB6B 5LYJA 1VK3A 1M1KH 4ZI7A 3CYPB 3VYSC 3JALA 5LOVA 2HQSC 1JN1A 3GYQA 5IJ0A 1SA0A 3MQWA 3N2GA 2IG8A 3DDNA 5AVMA 3NVIB 5HXZA 4C81A 3WPWA 3F0GA 4YJ2B 3N4YA 1YQNA 3VOBA 4DRXA 1X52A 2R751 4I55B 1VQ4F 3K2XA 3JAWA 1N8RH 1E7KA 1Q81H 4DXDA 1QVGF 3C9SA 2NMUA 3VI6A 3HKDA 4TV9B 4FFBB 4IIJA 4C8EA 4RQOA 5EO3A 4O2AA 3OW2F 3EORA 3VTIC 2Z1TA 3F6MA 3R0PA 1RA4A 4NUTA 5GIOC 4O4JA 1JD1A 2Z1UA 5MN6A 3ZP7A 4O4IB 3JAKB 3GTZA 3ZOPA 4E6EA 3N2KB 5ITZB 4U3JA 4G88A 1PF5A 4ZHQB 3LFOA 1XRGA 5EIBD 2LBWA 2HVYD 1T0AA 3RYIA 4IHJA 3PLAC 3M1XA 2Z1EA 3KIZA 4TV8B 5FJ4C 1Q7YH 3T80A 4YJ3B 3WXMB 2ZAUA 3QTYA 5GONB 3RYCB 3V7QA 2HS0A 4O2BB 3WJPA 5EB1B 4F6RB 4I50A 5IYZA 3JASB 4ZHWA 3MDOA 5HY1A 2ZF8A 3G6EF 4B46A 3NVKE 1DBFA 2CHTA 3RYFA 1OAPA 1QD9A 2VGNA 2VAMA 1XHOA 1GZ0A 1ONIA 1W5FA 5C8YA 2RHHA 4HNAB 1X25A 2WALA 2UYNA 4BVTA 2AIFA 1FFXB 5GINC 2OTLF 3I55F 1KQSF 3M84A 4G4ZA 3F0FA 2PHNA 2UYPA 3HKEA 4EI7A 5EAZA 3HJWC 2VGMA 4X20A 5BMVA 3KJKA 3RYHB 1SZQA 5CA0A 5LYJB 3P10A 3ELCA 2LBXA 3GHZA 2IAFA 4ZI7B 1IV4A 5HY0A 1VQ6F 3CPWF 3K14A 3WGJA 5LP6A 5LOVB 2BTUA 3ON1A 1H7MA 3NK7A 3OONA 4I4TA 5IJ0B 5JCOC 1RLGA 2LBTA 1H47A 4X3LA 1IV3A 3KHNA 1YHQF 3VMFB 3J7AR 2PMPA 5JQGA 3IMPA 2DYYA 4BT6A 1PXWA 5EYPA 4DRXB 5FNVA 1X7PA 5GAPK 3LWOC 5HXUA 1RLUA 4EI8A 2DT4A 3CC4F 4X1KA 5LXTA 5J2UA 3J80M 2CVLA 4BY9D 3JAWB 5JH7B 1OFUA 5EIBC 1VQKF 3KE1A 3CCSF 1YJWF 3M4SA 1XBIA 2GZLA 2Q1YA 2ZVYA 1H48A 3E1YA 4BW0B 3S0HA 5CB4A 3CCJF 4O2AB 3D01A 3JCMM 1KC8H 3L7QA 2BO1A 5FLXM 3I3FA 3VYTC 5CA1A 1XV2A 3CPQA 4X1IB 4LNUA 1FSZA 1CLIA 3LWVC 1R1MA 2F9ZC 3CC2F 4O4JB 5IT9M 5DCVA 2H8EA 1Q8RA 3CXCF 3I7TA 3CC7F 2GLZA 1W40A 3VIUA 4U3JB 1U43A 2UYKA 3S0YA 3VOAA 2QA4F 4C8IA 3K0TA 3CYQA 4U39A 3LWPC 1JFFB 5HP8A 3RYIB 1W42A 3WPXA 3HKCA 3WJQA 2HP0A 5KMGA 3HAXD 5EZYA 3TD3A 3MCAB 1VQNF 4BT4A 4ZOLA 2RHLA 3JARA 3U0OA 4G4VA 5J2TA 5HP7A 3UT5A 2QTPA 4I50B 1VQ7F 5IYZB 5JVDA 3G71F 1KD1H 3JATA 1VQ9F 3AGKA 3NMUC 3BYQA 1GO0A 3RA5A 4WBNA 3VO8A 1FNJA 3C8LA 4XCQA 2CWJA 3CMEF 5C8YB 1UI9A 4BT7A 1NMUB 5HY4A 2BTOA 4EI9A 3D00A 2KGWA 2KG4A 1KNJA 1VQMF 3WJRA 1TUBA 2VXYA 2QEXF 3S03A 3CMAF 5LA6B 4C4WC 2HP3A 3FFMA 1RQ7A 3JAMM 2W8BC 3HKEB 3MCQA 3QHDA 3HKBA 1CN7A 4X20B 3ERNA 2HRYA 2RHOA 4BVSA 1YGYA 2FC3A 1W5BA 5CA0B 1W59A 2HS3A 3F0EA 1K73H 4O4LA 3DC2A 4O4HA 5LP6B 4X1YA 3CCLF 3HWUA 3B6NA 2I6DA 5B8FA 1KNKA 3G4SF 1TVKA 5JQGB 5IJ9A 1Q86H 2UYJA 1COMA 1VQ5F 1QAHA 1VQLF 1T0KB 5EYPB 4ZHVA 4RHAA 1Q82H 5FNVB 3S06A 1UFYA 2B33A 5LP6C 3VCZA 1J7HA 4G4XA 4C82A 2HS4A 1QVFF 5ITZA
chains in the Genus database with same CATH topology
2H8CA 2H8EA 1Q8RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2H8C A;  2H8E A;  1Q8R A; 
#chains in the Genus database with same CATH topology
 1X7O A;  3FD6 A;  3S0W A;  2N48 A;  2L26 A;  3JAL B;  1W2B F;  5GAN K;  2RHJ A;  1SA0 B;  1W41 A;  3N2G B;  3CCR F;  2ZOV A;  4YJ3 A;  3KJJ A;  3CCU F;  5CA1 B;  4TUY A;  1RQ2 A;  5GON A;  3RYC A;  3N4Z A;  1K8A H;  4LNU B;  2QI2 A;  2BTQ B;  3QUW A;  3K12 A;  4NQ3 A;  1W55 A;  2AMT A;  2IQQ A;  3LME A;  3S02 A;  4ERH A;  3RA6 A;  1DT9 A;  3CD6 F;  3Q8H A;  2H6L A;  4BT3 A;  2OHW A;  3E22 A;  1JY8 A;  2I6R A;  4B5C A;  1GX1 A;  1U3L A;  2YYE A;  3HKD B;  2RB9 A;  5EB0 A;  4IIJ B;  3OBY A;  3LWR C;  1W5E A;  3I56 F;  5KMG B;  3WGN A;  4BT5 A;  5GIP C;  5EZY B;  3WGK A;  2OTM A;  4ZOL B;  3JAR B;  1W5A A;  3UT5 B;  2LCA A;  4PWT A;  5JVD B;  3RYH A;  1YI2 F;  3IEQ A;  4WBN B;  1YIJ F;  1IV1 A;  1YJN F;  3P0Z A;  1ODE A;  4KWE A;  5KX5 A;  2CW4 A;  3O85 A;  3V7E A;  4M8I A;  3F0D A;  3TD5 A;  1Z5V A;  4IHJ B;  2K1S A;  3LWQ C;  4G4Y A;  2OTJ F;  3ESJ A;  1QU9 A;  5A2Q M;  1TUB B;  1NJI H;  4R40 B;  3HKB B;  2CZW A;  5MN4 A;  3ZO8 A;  2EWC A;  4EB6 A;  5JH7 A;  4O4L B;  5HWE A;  4O4H B;  3RYF B;  1K9M H;  3SIU A;  3OBW A;  4X1Y B;  3VYU C;  3CB2 A;  1CK2 A;  1SDS A;  3ZP4 A;  1S72 F;  3C9U A;  2UYN B;  1ZWZ A;  5EWR A;  1VH8 A;  3PAF A;  3CCV F;  1TVK B;  4G4W A;  1IV2 A;  1VQP F;  2V9Y A;  4YJ2 A;  2ALE A;  5IJ9 B;  5HY2 A;  3IEW A;  4X1I A;  1VQO F;  2CHS A;  1YJ9 F;  4TZZ A;  2AIZ P;  4C8G A;  2ZOD A;  3CCM F;  4I55 A;  5BMV B;  2P6Y A;  1M90 H;  4ZHY B;  4TV9 A;  4FFB A;  3WGL A;  1JFF A;  2JNB A;  4I4T B;  2Z1F A;  3IKE A;  1NQ3 A;  1Z5W A;  3NK6 A;  3IKF A;  2GVI A;  2MQE A;  4TUY B;  2YXZ A;  1VQ8 F;  4X3M A;  3HTN A;  4BVQ A;  2KTV A;  5G4U C;  3CCQ F;  3FD5 A;  1U3P A;  5MN5 A;  3MBM A;  2G9I A;  1VQV A;  4O4I A;  4X1K B;  3JAK A;  3E22 B;  5J2U B;  5LXT B;  1VHA A;  2HX0 A;  2R6R 1;  3N2K A;  4ZHQ A;  1FNK A;  3JVH A;  3TD4 A;  3P4E A;  3RE3 A;  1W58 1;  5CB4 B;  5G4V C;  3V4D A;  2VAP A;  3CG6 A;  3CCE F;  1JJ2 F;  1GO1 A;  4TV8 A;  3J81 M;  1W57 A;  2KTU A;  5LA6 A;  3WGM A;  4BT2 A;  1IPA A;  4O2B A;  1U40 A;  4F6R A;  3LDT A;  3JAS A;  3V3T A;  2VAW A;  3FPI A;  3IR9 A;  3C9R A;  4B62 A;  5KX5 B;  2CSL A;  3E20 B;  4NWO B;  4BVR A;  2Z01 A;  3SIV A;  2OZB A;  3C9T A;  2UZH A;  4HNA A;  2ZVZ A;  2H8C A;  2Q1X A;  3HKC B;  1FFX A;  2HP0 B;  3D54 A;  2FGY A;  5JCO A;  3LYB A;  3FBA A;  1W3E X;  4ZK7 A;  2HRU A;  5J2T B;  4LCK A;  4B45 A;  1YIT F;  3JAT B;  4EB6 B;  5LYJ A;  1VK3 A;  1M1K H;  4ZI7 A;  3CYP B;  3VYS C;  3JAL A;  5LOV A;  2HQS C;  1JN1 A;  3GYQ A;  5IJ0 A;  1SA0 A;  3MQW A;  3N2G A;  2IG8 A;  3DDN A;  5AVM A;  3NVI B;  5HXZ A;  4C81 A;  3WPW A;  3F0G A;  4YJ2 B;  3N4Y A;  1YQN A;  3VOB A;  4DRX A;  1X52 A;  2R75 1;  4I55 B;  1VQ4 F;  3K2X A;  3JAW A;  1N8R H;  1E7K A;  1Q81 H;  4DXD A;  1QVG F;  3C9S A;  2NMU A;  3VI6 A;  3HKD A;  4TV9 B;  4FFB B;  4IIJ A;  4C8E A;  4RQO A;  5EO3 A;  4O2A A;  3OW2 F;  3EOR A;  3VTI C;  2Z1T A;  3F6M A;  3R0P A;  1RA4 A;  4NUT A;  5GIO C;  4O4J A;  1JD1 A;  2Z1U A;  5MN6 A;  3ZP7 A;  4O4I B;  3JAK B;  3GTZ A;  3ZOP A;  4E6E A;  3N2K B;  5ITZ B;  4U3J A;  4G88 A;  1PF5 A;  4ZHQ B;  3LFO A;  1XRG A;  5EIB D;  2LBW A;  2HVY D;  1T0A A;  3RYI A;  4IHJ A;  3PLA C;  3M1X A;  2Z1E A;  3KIZ A;  4TV8 B;  5FJ4 C;  1Q7Y H;  3T80 A;  4YJ3 B;  3WXM B;  2ZAU A;  3QTY A;  5GON B;  3RYC B;  3V7Q A;  2HS0 A;  4O2B B;  3WJP A;  5EB1 B;  4F6R B;  4I50 A;  5IYZ A;  3JAS B;  4ZHW A;  3MDO A;  5HY1 A;  2ZF8 A;  3G6E F;  4B46 A;  3NVK E;  1DBF A;  2CHT A;  3RYF A;  1OAP A;  1QD9 A;  2VGN A;  2VAM A;  1XHO A;  1GZ0 A;  1ONI A;  1W5F A;  5C8Y A;  2RHH A;  4HNA B;  1X25 A;  2WAL A;  2UYN A;  4BVT A;  2AIF A;  1FFX B;  5GIN C;  2OTL F;  3I55 F;  1KQS F;  3M84 A;  4G4Z A;  3F0F A;  2PHN A;  2UYP A;  3HKE A;  4EI7 A;  5EAZ A;  3HJW C;  2VGM A;  4X20 A;  5BMV A;  3KJK A;  3RYH B;  1SZQ A;  5CA0 A;  5LYJ B;  3P10 A;  3ELC A;  2LBX A;  3GHZ A;  2IAF A;  4ZI7 B;  1IV4 A;  5HY0 A;  1VQ6 F;  3CPW F;  3K14 A;  3WGJ A;  5LP6 A;  5LOV B;  2BTU A;  3ON1 A;  1H7M A;  3NK7 A;  3OON A;  4I4T A;  5IJ0 B;  5JCO C;  1RLG A;  2LBT A;  1H47 A;  4X3L A;  1IV3 A;  3KHN A;  1YHQ F;  3VMF B;  3J7A R;  2PMP A;  5JQG A;  3IMP A;  2DYY A;  4BT6 A;  1PXW A;  5EYP A;  4DRX B;  5FNV A;  1X7P A;  5GAP K;  3LWO C;  5HXU A;  1RLU A;  4EI8 A;  2DT4 A;  3CC4 F;  4X1K A;  5LXT A;  5J2U A;  3J80 M;  2CVL A;  4BY9 D;  3JAW B;  5JH7 B;  1OFU A;  5EIB C;  1VQK F;  3KE1 A;  3CCS F;  1YJW F;  3M4S A;  1XBI A;  2GZL A;  2Q1Y A;  2ZVY A;  1H48 A;  3E1Y A;  4BW0 B;  3S0H A;  5CB4 A;  3CCJ F;  4O2A B;  3D01 A;  3JCM M;  1KC8 H;  3L7Q A;  2BO1 A;  5FLX M;  3I3F A;  3VYT C;  5CA1 A;  1XV2 A;  3CPQ A;  4X1I B;  4LNU A;  1FSZ A;  1CLI A;  3LWV C;  1R1M A;  2F9Z C;  3CC2 F;  4O4J B;  5IT9 M;  5DCV A;  2H8E A;  1Q8R A;  3CXC F;  3I7T A;  3CC7 F;  2GLZ A;  1W40 A;  3VIU A;  4U3J B;  1U43 A;  2UYK A;  3S0Y A;  3VOA A;  2QA4 F;  4C8I A;  3K0T A;  3CYQ A;  4U39 A;  3LWP C;  1JFF B;  5HP8 A;  3RYI B;  1W42 A;  3WPX A;  3HKC A;  3WJQ A;  2HP0 A;  5KMG A;  3HAX D;  5EZY A;  3TD3 A;  3MCA B;  1VQN F;  4BT4 A;  4ZOL A;  2RHL A;  3JAR A;  3U0O A;  4G4V A;  5J2T A;  5HP7 A;  3UT5 A;  2QTP A;  4I50 B;  1VQ7 F;  5IYZ B;  5JVD A;  3G71 F;  1KD1 H;  3JAT A;  1VQ9 F;  3AGK A;  3NMU C;  3BYQ A;  1GO0 A;  3RA5 A;  4WBN A;  3VO8 A;  1FNJ A;  3C8L A;  4XCQ A;  2CWJ A;  3CME F;  5C8Y B;  1UI9 A;  4BT7 A;  1NMU B;  5HY4 A;  2BTO A;  4EI9 A;  3D00 A;  2KGW A;  2KG4 A;  1KNJ A;  1VQM F;  3WJR A;  1TUB A;  2VXY A;  2QEX F;  3S03 A;  3CMA F;  5LA6 B;  4C4W C;  2HP3 A;  3FFM A;  1RQ7 A;  3JAM M;  2W8B C;  3HKE B;  3MCQ A;  3QHD A;  3HKB A;  1CN7 A;  4X20 B;  3ERN A;  2HRY A;  2RHO A;  4BVS A;  1YGY A;  2FC3 A;  1W5B A;  5CA0 B;  1W59 A;  2HS3 A;  3F0E A;  1K73 H;  4O4L A;  3DC2 A;  4O4H A;  5LP6 B;  4X1Y A;  3CCL F;  3HWU A;  3B6N A;  2I6D A;  5B8F A;  1KNK A;  3G4S F;  1TVK A;  5JQG B;  5IJ9 A;  1Q86 H;  2UYJ A;  1COM A;  1VQ5 F;  1QAH A;  1VQL F;  1T0K B;  5EYP B;  4ZHV A;  4RHA A;  1Q82 H;  5FNV B;  3S06 A;  1UFY A;  2B33 A;  5LP6 C;  3VCZ A;  1J7H A;  4G4X A;  4C82 A;  2HS4 A;  1QVF F;  5ITZ A; 
#chains in the Genus database with same CATH homology
 2H8C A;  2H8E A;  1Q8R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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