The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
31
|
sequence length |
117
|
structure length |
117
|
Chain Sequence |
NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRNLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
RusA Holliday junction resolvase: DNA complex structure--insights into selectivity and specificity.
pubmed doi rcsb |
| source organism |
Escherichia coli
|
| molecule tags |
Hydrolase/dna
|
| molecule keywords |
5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*GP*T)-3'
|
| total genus |
31
|
| structure length |
117
|
| sequence length |
117
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature |
ec
3.1.22.4: Crossover junction endodeoxyribonuclease. |
| pdb deposition date | 2006-06-07 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF05866 | RusA | Endodeoxyribonuclease RusA |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | 60s Ribosomal Protein L30; Chain: A; | Holliday junction resolvase RusA |
#chains in the Genus database with same CATH superfamily 2H8C A; 2H8E A; 1Q8R A; #chains in the Genus database with same CATH topology 3WXM B; 3OBW A; 4C82 A; 1W5E A; 1K73 H; 3E20 B; 4O4H B; 5GIP C; 3FD6 A; 1DT9 A; 4I55 A; 4ERH A; 3UT5 B; 5J2T B; 3SIV A; 3S0W A; 3KJJ A; 3LDT A; 4DRX A; 4C8I A; 3HKE A; 4M8I A; 5LYJ A; 1KC8 H; 4EI9 A; 3JAR B; 4BT3 A; 2OHW A; 4BT4 A; 5LXT A; 1VQK F; 2UYN A; 4TV8 B; 5CB4 B; 4IIJ A; 4X3M A; 4HNA B; 2HRU A; 3HTN A; 3F6M A; 4R40 B; 4BVQ A; 4ZHY B; 1UI9 A; 3CCV F; 2DYY A; 1VHA A; 3TD3 A; 1SDS A; 3CB2 A; 4HNA A; 3JAK B; 4X1Y A; 2CZW A; 3S06 A; 4NQ3 A; 3CME F; 3S03 A; 5C8Y B; 4X20 B; 3U0O A; 5FNV A; 3CC7 F; 3FFM A; 3CPQ A; 4E6E A; 4EB6 B; 3D01 A; 5IYZ A; 3MCA B; 3T80 A; 1U3L A; 3FPI A; 5EB1 B; 3CCU F; 2HS4 A; 5JCO A; 2GVI A; 4X1Y B; 1SZQ A; 2FGY A; 3RYH B; 2OTJ F; 1W42 A; 4KWE A; 5CA0 A; 1CLI A; 3HWU A; 3O85 A; 4B62 A; 1VQP F; 4B45 A; 3K14 A; 4ZOL A; 5MN6 A; 2OTM A; 4ZOL B; 2L26 A; 2NMU A; 2K1S A; 3JAT A; 2VAM A; 3CG6 A; 3JAR A; 2KG4 A; 2Z1E A; 5ITZ A; 2EWC A; 4IHJ B; 3LWQ C; 3IMP A; 4O4J A; 3RYF A; 3J80 M; 1VQ7 F; 3HKE B; 2Z1F A; 2LBX A; 3OW2 F; 4ZHW A; 3LWV C; 5IJ0 A; 1W57 A; 5J2T A; 5EYP A; 3DC2 A; 5HXZ A; 5A2Q M; 4I55 B; 1Q86 H; 2VGM A; 2PMP A; 2VXY A; 2ALE A; 3N4Y A; 3G6E F; 5LOV B; 5FNV B; 2R6R 1; 2HS3 A; 3ELC A; 1ODE A; 4ZHQ B; 3K0T A; 1CN7 A; 4WBN A; 1IV3 A; 2Z01 A; 1PXW A; 5BMV B; 1W2B F; 1YIT F; 2HP0 A; 1RA4 A; 4TUY B; 2CW4 A; 5LP6 C; 2OTL F; 1JD1 A; 1T0A A; 4YJ2 B; 4ZI7 A; 3IR9 A; 3HJW C; 5FJ4 C; 5EYP B; 4U39 A; 1TVK A; 3CC2 F; 5IJ0 B; 5EAZ A; 5CA1 A; 2R75 1; 2P6Y A; 1RLG A; 4XCQ A; 1CK2 A; 2YXZ A; 1VQ4 F; 1COM A; 2BTQ B; 2UYJ A; 3JAT B; 3N2K B; 3R0P A; 5J2U B; 3PLA C; 1FNK A; 1H48 A; 3CCE F; 4U3J A; 3F0F A; 1W5A A; 3ON1 A; 4G4Z A; 1ONI A; 2HP0 B; 2IQQ A; 3IKE A; 4G88 A; 2Z1U A; 3NVI B; 3KE1 A; 3RYH A; 1KD1 H; 4BY9 D; 1KQS F; 1OFU A; 5GIN C; 4BVS A; 1GZ0 A; 3D54 A; 2HP3 A; 3CMA F; 4I50 A; 5IYZ B; 3JAS A; 5LOV A; 1J7H A; 3WJQ A; 1T0K B; 5HY4 A; 1OAP A; 3KHN A; 2LCA A; 3ZP4 A; 5JH7 B; 3M4S A; 2H6L A; 3WGK A; 3RYI B; 2KTV A; 5HY2 A; 3MDO A; 5KMG B; 5ITZ B; 1VK3 A; 2AMT A; 3S0Y A; 3F0E A; 1YI2 F; 4LNU A; 1M90 H; 5LP6 A; 3B6N A; 1W40 A; 3S02 A; 3P4E A; 5GAN K; 1N8R H; 1XHO A; 1NMU B; 3MCQ A; 2AIZ P; 5LYJ B; 1TUB A; 2BO1 A; 3WJP A; 5IJ9 B; 1Q81 H; 4O2B A; 3KIZ A; 3CCJ F; 4DRX B; 3JAL B; 3V7Q A; 3VTI C; 3GHZ A; 3QTY A; 2VAW A; 1YGY A; 3C9U A; 4X3L A; 3UT5 A; 1ZWZ A; 4EB6 A; 2HX0 A; 5JQG B; 2ZAU A; 2ZOD A; 2LBW A; 2DT4 A; 1VQO F; 1W5B A; 4X1I B; 4BVT A; 3WPW A; 5EZY A; 3JAW B; 4ZHV A; 2ZVZ A; 4RQO A; 3C9S A; 5GON A; 1Q8R A; 2QTP A; 3CYQ A; 1IV2 A; 1JFF A; 4G4W A; 5LP6 B; 3SIU A; 2RHL A; 3BYQ A; 3RYC A; 3CCQ F; 2CHS A; 2HRY A; 3S0H A; 3ZP7 A; 1JJ2 F; 3IEQ A; 4BT5 A; 1Z5W A; 1E7K A; 4F6R A; 1VQV A; 1YJW F; 1IV1 A; 1SA0 A; 5EZY B; 1FSZ A; 2CSL A; 3N2G B; 4I4T A; 3MBM A; 4B46 A; 3P0Z A; 1FFX B; 1XBI A; 2MQE A; 3VOB A; 3CPW F; 1X7P A; 3M1X A; 4YJ3 A; 3I56 F; 3OBY A; 3E22 A; 2I6R A; 5HXU A; 5EIB C; 3JCM M; 3RE3 A; 1S72 F; 1GX1 A; 4ZK7 A; 2JNB A; 3J7A R; 3RA6 A; 4PWT A; 3CYP B; 4FFB A; 3FBA A; 2V9Y A; 1YHQ F; 1U40 A; 1VQ8 F; 3IKF A; 4TV9 A; 2UYP A; 4O4I B; 5GAP K; 3P10 A; 1XRG A; 5HWE A; 4O4L B; 3GTZ A; 4DXD A; 3HKD A; 4RHA A; 3HKB B; 2N48 A; 1QVG F; 2YYE A; 3CCS F; 4O2A B; 1KNK A; 4X1K A; 3V3T A; 3WPX A; 3TD5 A; 3L7Q A; 1Q7Y H; 4I50 B; 5HP8 A; 4TV9 B; 2PHN A; 4WBN B; 1JFF B; 1JY8 A; 3D00 A; 3VYT C; 3I3F A; 2RHJ A; 5LA6 B; 3JAW A; 3LYB A; 3CC4 F; 1KNJ A; 1IV4 A; 3WGM A; 4X1I A; 3QUW A; 3E22 B; 3E1Y A; 5IT9 M; 2QEX F; 2HS0 A; 4NWO B; 2G9I A; 3FD5 A; 1JN1 A; 5EWR A; 3M84 A; 1K9M H; 3IEW A; 5EIB D; 4O4L A; 3N2G A; 1VH8 A; 3CD6 F; 3MQW A; 3WGL A; 2ZOV A; 3K12 A; 1R1M A; 3HKC B; 3HAX D; 1X25 A; 1TVK B; 4BVR A; 1U43 A; 3G4S F; 4F6R B; 3C9T A; 5EB0 A; 3VOA A; 3LWO C; 3V4D A; 4C8G A; 3TD4 A; 2Q1Y A; 3G71 F; 4B5C A; 4ZI7 B; 5G4V C; 1QD9 A; 1RLU A; 2B33 A; 3ERN A; 5KMG A; 5LA6 A; 1W59 A; 3JAM M; 5EO3 A; 5BMV A; 5HY0 A; 4G4Y A; 3J81 M; 3VMF B; 4BW0 B; 1FFX A; 1W5F A; 2CVL A; 2FC3 A; 1VQ6 F; 4I4T B; 2OZB A; 4EI8 A; 3NK6 A; 3F0G A; 5JQG A; 4O2A A; 3JAS B; 3NK7 A; 1VQ9 F; 4NUT A; 5C8Y A; 4G4X A; 2QA4 F; 1VQL F; 4EI7 A; 3QHD A; 1UFY A; 1YIJ F; 3RYF B; 3I7T A; 3LFO A; 2GZL A; 3RYC B; 1XV2 A; 1QAH A; 1IPA A; 2W8B C; 3K2X A; 3LME A; 3LWR C; 3AGK A; 5AVM A; 3N2K A; 3CCR F; 2HQS C; 1GO1 A; 5LXT B; 3CXC F; 3HKC A; 5G4U C; 1VQN F; 4BT2 A; 4G4V A; 3RYI A; 2KTU A; 3PAF A; 2QI2 A; 5MN4 A; 3NVK E; 2Q1X A; 3JVH A; 2CHT A; 1W58 1; 3OON A; 1NJI H; 5HP7 A; 3V7E A; 5FLX M; 1QVF F; 2CWJ A; 1Q82 H; 3JAL A; 2H8C A; 4O4H A; 5JCO C; 3WGJ A; 2RHO A; 3VIU A; 5B8F A; 1SA0 B; 4X20 A; 3ESJ A; 3ZO8 A; 1RQ7 A; 2UZH A; 3Q8H A; 3F0D A; 3WJR A; 1U3P A; 2ZF8 A; 2LBT A; 1Z5V A; 3N4Z A; 5MN5 A; 1VQM F; 2AIF A; 3CCL F; 4C8E A; 1YQN A; 1YJN F; 1YJ9 F; 4X1K B; 1GO0 A; 4U3J B; 5JH7 A; 4IIJ B; 1H7M A; 4TV8 A; 3VYS C; 5CB4 A; 5HY1 A; 5GON B; 1H47 A; 2IG8 A; 3VYU C; 1W55 A; 2F9Z C; 2BTU A; 5GIO C; 3CCM F; 3VO8 A; 4O4J B; 2RHH A; 5CA1 B; 4IHJ A; 4O4I A; 3WGN A; 2UYK A; 2BTO A; 2KGW A; 2Z1T A; 2HVY D; 3C9R A; 4FFB B; 2IAF A; 4O2B B; 4C81 A; 5JVD A; 1TUB B; 2WAL A; 5IJ9 A; 2ZVY A; 2I6D A; 3DDN A; 4TUY A; 5CA0 B; 3LWP C; 4LCK A; 5JVD B; 1PF5 A; 4YJ3 B; 4LNU B; 3ZOP A; 5J2U A; 1W41 A; 4ZHQ A; 3NMU C; 1QU9 A; 3C8L A; 1VQ5 F; 2H8E A; 5KX5 B; 2VGN A; 1X7O A; 3KJK A; 1X52 A; 4BT6 A; 4TZZ A; 3RA5 A; 1RQ2 A; 3JAK A; 2VAP A; 3HKB A; 1FNJ A; 3I55 F; 3HKD B; 1NQ3 A; 3GYQ A; 5KX5 A; 1K8A H; 5DCV A; 4YJ2 A; 4C4W C; 3VCZ A; 1DBF A; 2RB9 A; 1M1K H; 1W3E X; 2GLZ A; 3VI6 A; 2UYN B; 3EOR A; 4BT7 A; #chains in the Genus database with same CATH homology 2H8C A; 2H8E A; 1Q8R A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
