2H8CA

Structure of rusa d70n in complex with dna
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
117
structure length
117
Chain Sequence
NTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRNLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
source organism Escherichia coli
publication title RusA Holliday junction resolvase: DNA complex structure--insights into selectivity and specificity.
pubmed doi rcsb
molecule keywords 5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*GP*T)-3'
total genus 31
structure length 117
sequence length 117
chains with identical sequence B, C, D
ec nomenclature ec 3.1.22.4: Crossover junction endodeoxyribonuclease.
pdb deposition date 2006-06-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05866 RusA Endodeoxyribonuclease RusA
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1330.70 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; Holliday junction resolvase RusA 2h8cA00
1Q8RA 2H8CA 2H8EA
chains in the Genus database with same CATH superfamily
4EI7A 3JATA 3S03A 2W8BC 1UFYA 1X25A 3JALB 2PMPA 4IIJB 5FJ4C 1Z5VA 1N8RH 4B45A 3JVHA 2BTUA 3N2GB 3IEQA 2LBTA 2PHNA 3TD4A 3OONA 3F0EA 5A2QM 3CYPB 2RB9A 2QA4F 4FFBB 5HY0A 3P0ZA 1JFFA 3S0WA 3RYFB 3E1YA 5GONA 4LNUB 3LWRC 3WJRA 5KX5B 4BVRA 5MN4A 4HNAB 3RE3A 1Q82H 5LXTB 2CWJA 3KJKA 1YI2F 1W5BA 3ZP7A 4WBNB 1JN1A 2DT4A 2KTUA 3HKBA 5BMVB 4I4TA 4TV9B 2Z1FA 2BTQB 4DXDA 3OBYA 3WGKA 3ZO8A 4BT2A 3QUWA 1XV2A 4F6RB 2RHOA 3ON1A 3HKEA 3JAKB 3RYIA 1VQ5F 3HTNA 1W42A 3V4DA 3CCVF 3ERNA 2OTJF 4TV8A 1K73H 1Q7YH 5DCVA 3N4YA 1PF5A 4X20A 5EYPA 3CCSF 4BVSA 1YQNA 3CB2A 2F9ZC 2MQEA 2V9YA 5HY2A 1H48A 1VQ7F 3C9RA 2RHHA 4U3JA 2UYPA 2HS4A 1YJ9F 4ZHQA 4X1YA 2HS3A 2R751 3P10A 3JCMM 3GHZA 5CA0A 1H7MA 1M90H 5LA6A 4G88A 1IV4A 4I50A 4O4LA 1KD1H 2I6RA 3E22A 2KTVA 3IR9A 1W55A 1X52A 1JD1A 4O4JB 5FNVB 3M4SA 5LP6C 5EO3A 1RQ2A 2ALEA 3VOAA 3PAFA 4BVTA 5IT9M 2H6LA 5EZYB 3CCUF 1VQ4F 4ZOLA 1SZQA 2CW4A 2HVYD 1VK3A 5JVDB 1RLGA 1XRGA 4C4WC 5MN5A 3TD3A 5IYZB 3VO8A 5EIBD 3I55F 3AGKA 2I6DA 3P4EA 2LBWA 2OHWA 2HP3A 2L26A 4G4XA 3NMUC 3JARB 4TZZA 5JH7A 1X7PA 2VGMA 3C9SA 3PLAC 3MQWA 1QAHA 3S0YA 3KJJA 2ZVZA 3CMAF 2UYJA 4I55A 2LCAA 4ZK7A 2N48A 4NUTA 3RA5A 4O2BB 3QTYA 2CHTA 3F0DA 1U43A 2RHJA 1KC8H 3VCZA 4ZHYB 3N2GA 3VYUC 2CSLA 4BT4A 4DRXB 3WJPA 1KNKA 4ZHWA 2RHLA 1XHOA 3IMPA 3LYBA 5JQGB 5LOVB 3KIZA 4FFBA 3D01A 1E7KA 2R6R1 2G9IA 3RYCB 1VQ6F 3JASB 1W57A 3HKDB 3S06A 4EI9A 1VHAA 2H8EA 3JAWB 1YHQF 1VQLF 5HY4A 1ODEA 4C8EA 5KMGA 3F6MA 4G4WA 3J7AR 3MCAB 4PWTA 3NK6A 1VH8A 4RHAA 4WBNA 1M1KH 3ELCA 2HX0A 3LWQC 5LP6A 1TUBA 2GVIA 2ZVYA 3WGNA 5J2UA 3HKCA 5IJ9A 1XBIA 2H8CA 4YJ3B 1RA4A 1NQ3A 3WPXA 1RLUA 3JATB 3CYQA 3F0GA 2HP0A 1YJWF 3IKEA 3WPWA 3IEWA 1VQVA 2FC3A 3MCQA 2CZWA 3C8LA 3VYSC 5GIPC 4LCKA 3VYTC 2CHSA 1W2BF 2P6YA 3TD5A 1KQSF 3CPWF 2HQSC 3RYHA 1R1MA 5HP7A 2BTOA 1GZ0A 2Z1EA 2Z1UA 3K14A 3KHNA 3WJQA 4B5CA 5MN6A 3VIUA 2UYKA 1JFFB 2AIFA 1KNJA 3CG6A 5GONB 1ZWZA 5HXZA 4C81A 1DBFA 2ZF8A 4R40B 3G4SF 3T80A 1VQMF 1SA0A 3N2KA 4ZI7A 3NVKE 1FFXA 3J81M 5J2TA 4ZHVA 3C9UA 2OTMA 4B62A 4EI8A 2ZODA 4IHJA 3HKBB 3SIUA 3FPIA 1Q8RA 4I4TB 5C8YA 4O4JA 1GO1A 2WALA 4M8IA 5CA1A 5IJ0B 5GANK 3WGJA 1NJIH 2Q1YA 4BT5A 3CC2F 2OZBA 4XCQA 1U40A 1CLIA 5JCOC 4TUYA 2UYNA 4O2AA 1S72F 4X1IB 3CC7F 3EORA 4YJ2A 1VQKF 2QI2A 3UT5A 3HKEB 3RYIB 3G6EF 2OTLF 5FLXM 3CMEF 4G4YA 4NQ3A 1W5AA 1K9MH 1COMA 3JARA 5EIBC 4X20B 5EYPB 4C82A 3CPQA 2KG4A 1TVKB 2AMTA 2GZLA 3VMFB 1IV2A 3L7QA 4X1KA 3DC2A 5CB4B 3I56F 4X1YB 2GLZA 3M84A 5LYJB 1JJ2F 3KE1A 4EB6A 2YYEA 4O4HA 1GO0A 2DYYA 1VQPF 3DDNA 1ONIA 4I50B 4C8GA 2ZOVA 3E22B 1GX1A 2ZAUA 3HAXD 2VAPA 2Z01A 5HXUA 3WGMA 3JALA 4BVQA 4IIJA 3QHDA 1FNKA 3I3FA 3J80M 1UI9A 3LFOA 5B8FA 4G4VA 3LWPC 2B33A 3G71F 1OFUA 5HY1A 3V3TA 1W40A 1X7OA 2HS0A 1RQ7A 3O85A 4O4IB 3U0OA 5JH7B 3RYFA 2CVLA 1Z5WA 4LNUA 2HRYA 3RA6A 4B46A 5KX5A 1CK2A 4ERHA 3S02A 4HNAA 5JCOA 4I55B 3MDOA 5LXTA 2VAMA 5BMVA 4TV9A 2QEXF 3D54A 3B6NA 1YITF 3IKFA 3CXCF 1SDSA 5G4UC 2JNBA 4G4ZA 2NMUA 1Q81H 5ITZB 4F6RA 3M1XA 1YIJF 3K0TA 1U3PA 4BT7A 1VQ9F 3VI6A 3JAKA 4KWEA 5GIOC 2UZHA 4X3LA 3CD6F 2VAWA 3Q8HA 3WGLA 3N4ZA 2IAFA 3FFMA 1J7HA 1T0AA 2Z1TA 4U39A 1H47A 2Q1XA 1W59A 1VQ8F 3GTZA 3GYQA 3HWUA 5KMGB 1FSZA 1JY8A 5AVMA 3CCJF 3CCRF 3OBWA 3CCEF 3NK7A 3F0FA 1VQOF 1W3EX 3NVIB 5LP6B 1OAPA 5HWEA 1TUBB 5J2UB 2HRUA 3D00A 5IJ0A 1T0KB 3HKCB 5IJ9B 1IV1A 3HJWC 3SIVA 4X1IA 3S0HA 4BT3A 2KGWA 3CCMF 2HP0B 3K2XA 2VXYA 5FNVA 1QU9A 3I7TA 5EZYA 1CN7A 2IG8A 5EAZA 3V7QA 5JVDA 5EB0A 3VTIC 3BYQA 1YJNF 3OW2F 1NMUB 3RYHB 4NWOB 3CCQF 5IYZA 1TVKA 1K8AH 3MBMA 3ZP4A 4TV8B 3R0PA 5CB4A 5LYJA 4C8IA 2LBXA 1SA0B 3N2KB 4ZI7B 4X3MA 1FFXB 5J2TB 4RQOA 2BO1A 3CC4F 1W5FA 4U3JB 4ZHQB 1DT9A 4IHJB 4BT6A 5C8YB 4E6EA 3LMEA 4O2BA 3ZOPA 3K12A 5CA1B 5CA0B 3CCLF 3V7EA 5EB1B 5EWRA 2YXZA 1QVGF 5LA6B 4BW0B 1IV3A 4O4LB 4TUYB 2UYNB 4O2AB 4DRXA 2VGNA 2K1SA 4YJ2B 1PXWA 2IQQA 3E20B 3UT5B 5JQGA 5LOVA 2AIZP 5GAPK 4BY9D 3FBAA 1VQNF 4O4IA 3RYCA 4ZOLB 1FNJA 3JASA 1W41A 3HKDA 3WXMB 3JAMM 3JAWA 3C9TA 1U3LA 2EWCA 3FD5A 3LWOC 4X1KB 1IPAA 1YGYA 5G4VC 1W581 2FGYA 3ESJA 1QD9A 5GINC 5HP8A 4EB6B 1QVFF 4O4HB 1Q86H 3FD6A 2QTPA 1W5EA 4YJ3A 3VOBA 3LWVC 3LDTA 5ITZA
chains in the Genus database with same CATH topology
1Q8RA 2H8CA 2H8EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Q8R A;  2H8C A;  2H8E A; 
#chains in the Genus database with same CATH topology
 4EI7 A;  3JAT A;  3S03 A;  2W8B C;  1UFY A;  1X25 A;  3JAL B;  2PMP A;  4IIJ B;  5FJ4 C;  1Z5V A;  1N8R H;  4B45 A;  3JVH A;  2BTU A;  3N2G B;  3IEQ A;  2LBT A;  2PHN A;  3TD4 A;  3OON A;  3F0E A;  5A2Q M;  3CYP B;  2RB9 A;  2QA4 F;  4FFB B;  5HY0 A;  3P0Z A;  1JFF A;  3S0W A;  3RYF B;  3E1Y A;  5GON A;  4LNU B;  3LWR C;  3WJR A;  5KX5 B;  4BVR A;  5MN4 A;  4HNA B;  3RE3 A;  1Q82 H;  5LXT B;  2CWJ A;  3KJK A;  1YI2 F;  1W5B A;  3ZP7 A;  4WBN B;  1JN1 A;  2DT4 A;  2KTU A;  3HKB A;  5BMV B;  4I4T A;  4TV9 B;  2Z1F A;  2BTQ B;  4DXD A;  3OBY A;  3WGK A;  3ZO8 A;  4BT2 A;  3QUW A;  1XV2 A;  4F6R B;  2RHO A;  3ON1 A;  3HKE A;  3JAK B;  3RYI A;  1VQ5 F;  3HTN A;  1W42 A;  3V4D A;  3CCV F;  3ERN A;  2OTJ F;  4TV8 A;  1K73 H;  1Q7Y H;  5DCV A;  3N4Y A;  1PF5 A;  4X20 A;  5EYP A;  3CCS F;  4BVS A;  1YQN A;  3CB2 A;  2F9Z C;  2MQE A;  2V9Y A;  5HY2 A;  1H48 A;  1VQ7 F;  3C9R A;  2RHH A;  4U3J A;  2UYP A;  2HS4 A;  1YJ9 F;  4ZHQ A;  4X1Y A;  2HS3 A;  2R75 1;  3P10 A;  3JCM M;  3GHZ A;  5CA0 A;  1H7M A;  1M90 H;  5LA6 A;  4G88 A;  1IV4 A;  4I50 A;  4O4L A;  1KD1 H;  2I6R A;  3E22 A;  2KTV A;  3IR9 A;  1W55 A;  1X52 A;  1JD1 A;  4O4J B;  5FNV B;  3M4S A;  5LP6 C;  5EO3 A;  1RQ2 A;  2ALE A;  3VOA A;  3PAF A;  4BVT A;  5IT9 M;  2H6L A;  5EZY B;  3CCU F;  1VQ4 F;  4ZOL A;  1SZQ A;  2CW4 A;  2HVY D;  1VK3 A;  5JVD B;  1RLG A;  1XRG A;  4C4W C;  5MN5 A;  3TD3 A;  5IYZ B;  3VO8 A;  5EIB D;  3I55 F;  3AGK A;  2I6D A;  3P4E A;  2LBW A;  2OHW A;  2HP3 A;  2L26 A;  4G4X A;  3NMU C;  3JAR B;  4TZZ A;  5JH7 A;  1X7P A;  2VGM A;  3C9S A;  3PLA C;  3MQW A;  1QAH A;  3S0Y A;  3KJJ A;  2ZVZ A;  3CMA F;  2UYJ A;  4I55 A;  2LCA A;  4ZK7 A;  2N48 A;  4NUT A;  3RA5 A;  4O2B B;  3QTY A;  2CHT A;  3F0D A;  1U43 A;  2RHJ A;  1KC8 H;  3VCZ A;  4ZHY B;  3N2G A;  3VYU C;  2CSL A;  4BT4 A;  4DRX B;  3WJP A;  1KNK A;  4ZHW A;  2RHL A;  1XHO A;  3IMP A;  3LYB A;  5JQG B;  5LOV B;  3KIZ A;  4FFB A;  3D01 A;  1E7K A;  2R6R 1;  2G9I A;  3RYC B;  1VQ6 F;  3JAS B;  1W57 A;  3HKD B;  3S06 A;  4EI9 A;  1VHA A;  2H8E A;  3JAW B;  1YHQ F;  1VQL F;  5HY4 A;  1ODE A;  4C8E A;  5KMG A;  3F6M A;  4G4W A;  3J7A R;  3MCA B;  4PWT A;  3NK6 A;  1VH8 A;  4RHA A;  4WBN A;  1M1K H;  3ELC A;  2HX0 A;  3LWQ C;  5LP6 A;  1TUB A;  2GVI A;  2ZVY A;  3WGN A;  5J2U A;  3HKC A;  5IJ9 A;  1XBI A;  2H8C A;  4YJ3 B;  1RA4 A;  1NQ3 A;  3WPX A;  1RLU A;  3JAT B;  3CYQ A;  3F0G A;  2HP0 A;  1YJW F;  3IKE A;  3WPW A;  3IEW A;  1VQV A;  2FC3 A;  3MCQ A;  2CZW A;  3C8L A;  3VYS C;  5GIP C;  4LCK A;  3VYT C;  2CHS A;  1W2B F;  2P6Y A;  3TD5 A;  1KQS F;  3CPW F;  2HQS C;  3RYH A;  1R1M A;  5HP7 A;  2BTO A;  1GZ0 A;  2Z1E A;  2Z1U A;  3K14 A;  3KHN A;  3WJQ A;  4B5C A;  5MN6 A;  3VIU A;  2UYK A;  1JFF B;  2AIF A;  1KNJ A;  3CG6 A;  5GON B;  1ZWZ A;  5HXZ A;  4C81 A;  1DBF A;  2ZF8 A;  4R40 B;  3G4S F;  3T80 A;  1VQM F;  1SA0 A;  3N2K A;  4ZI7 A;  3NVK E;  1FFX A;  3J81 M;  5J2T A;  4ZHV A;  3C9U A;  2OTM A;  4B62 A;  4EI8 A;  2ZOD A;  4IHJ A;  3HKB B;  3SIU A;  3FPI A;  1Q8R A;  4I4T B;  5C8Y A;  4O4J A;  1GO1 A;  2WAL A;  4M8I A;  5CA1 A;  5IJ0 B;  5GAN K;  3WGJ A;  1NJI H;  2Q1Y A;  4BT5 A;  3CC2 F;  2OZB A;  4XCQ A;  1U40 A;  1CLI A;  5JCO C;  4TUY A;  2UYN A;  4O2A A;  1S72 F;  4X1I B;  3CC7 F;  3EOR A;  4YJ2 A;  1VQK F;  2QI2 A;  3UT5 A;  3HKE B;  3RYI B;  3G6E F;  2OTL F;  5FLX M;  3CME F;  4G4Y A;  4NQ3 A;  1W5A A;  1K9M H;  1COM A;  3JAR A;  5EIB C;  4X20 B;  5EYP B;  4C82 A;  3CPQ A;  2KG4 A;  1TVK B;  2AMT A;  2GZL A;  3VMF B;  1IV2 A;  3L7Q A;  4X1K A;  3DC2 A;  5CB4 B;  3I56 F;  4X1Y B;  2GLZ A;  3M84 A;  5LYJ B;  1JJ2 F;  3KE1 A;  4EB6 A;  2YYE A;  4O4H A;  1GO0 A;  2DYY A;  1VQP F;  3DDN A;  1ONI A;  4I50 B;  4C8G A;  2ZOV A;  3E22 B;  1GX1 A;  2ZAU A;  3HAX D;  2VAP A;  2Z01 A;  5HXU A;  3WGM A;  3JAL A;  4BVQ A;  4IIJ A;  3QHD A;  1FNK A;  3I3F A;  3J80 M;  1UI9 A;  3LFO A;  5B8F A;  4G4V A;  3LWP C;  2B33 A;  3G71 F;  1OFU A;  5HY1 A;  3V3T A;  1W40 A;  1X7O A;  2HS0 A;  1RQ7 A;  3O85 A;  4O4I B;  3U0O A;  5JH7 B;  3RYF A;  2CVL A;  1Z5W A;  4LNU A;  2HRY A;  3RA6 A;  4B46 A;  5KX5 A;  1CK2 A;  4ERH A;  3S02 A;  4HNA A;  5JCO A;  4I55 B;  3MDO A;  5LXT A;  2VAM A;  5BMV A;  4TV9 A;  2QEX F;  3D54 A;  3B6N A;  1YIT F;  3IKF A;  3CXC F;  1SDS A;  5G4U C;  2JNB A;  4G4Z A;  2NMU A;  1Q81 H;  5ITZ B;  4F6R A;  3M1X A;  1YIJ F;  3K0T A;  1U3P A;  4BT7 A;  1VQ9 F;  3VI6 A;  3JAK A;  4KWE A;  5GIO C;  2UZH A;  4X3L A;  3CD6 F;  2VAW A;  3Q8H A;  3WGL A;  3N4Z A;  2IAF A;  3FFM A;  1J7H A;  1T0A A;  2Z1T A;  4U39 A;  1H47 A;  2Q1X A;  1W59 A;  1VQ8 F;  3GTZ A;  3GYQ A;  3HWU A;  5KMG B;  1FSZ A;  1JY8 A;  5AVM A;  3CCJ F;  3CCR F;  3OBW A;  3CCE F;  3NK7 A;  3F0F A;  1VQO F;  1W3E X;  3NVI B;  5LP6 B;  1OAP A;  5HWE A;  1TUB B;  5J2U B;  2HRU A;  3D00 A;  5IJ0 A;  1T0K B;  3HKC B;  5IJ9 B;  1IV1 A;  3HJW C;  3SIV A;  4X1I A;  3S0H A;  4BT3 A;  2KGW A;  3CCM F;  2HP0 B;  3K2X A;  2VXY A;  5FNV A;  1QU9 A;  3I7T A;  5EZY A;  1CN7 A;  2IG8 A;  5EAZ A;  3V7Q A;  5JVD A;  5EB0 A;  3VTI C;  3BYQ A;  1YJN F;  3OW2 F;  1NMU B;  3RYH B;  4NWO B;  3CCQ F;  5IYZ A;  1TVK A;  1K8A H;  3MBM A;  3ZP4 A;  4TV8 B;  3R0P A;  5CB4 A;  5LYJ A;  4C8I A;  2LBX A;  1SA0 B;  3N2K B;  4ZI7 B;  4X3M A;  1FFX B;  5J2T B;  4RQO A;  2BO1 A;  3CC4 F;  1W5F A;  4U3J B;  4ZHQ B;  1DT9 A;  4IHJ B;  4BT6 A;  5C8Y B;  4E6E A;  3LME A;  4O2B A;  3ZOP A;  3K12 A;  5CA1 B;  5CA0 B;  3CCL F;  3V7E A;  5EB1 B;  5EWR A;  2YXZ A;  1QVG F;  5LA6 B;  4BW0 B;  1IV3 A;  4O4L B;  4TUY B;  2UYN B;  4O2A B;  4DRX A;  2VGN A;  2K1S A;  4YJ2 B;  1PXW A;  2IQQ A;  3E20 B;  3UT5 B;  5JQG A;  5LOV A;  2AIZ P;  5GAP K;  4BY9 D;  3FBA A;  1VQN F;  4O4I A;  3RYC A;  4ZOL B;  1FNJ A;  3JAS A;  1W41 A;  3HKD A;  3WXM B;  3JAM M;  3JAW A;  3C9T A;  1U3L A;  2EWC A;  3FD5 A;  3LWO C;  4X1K B;  1IPA A;  1YGY A;  5G4V C;  1W58 1;  2FGY A;  3ESJ A;  1QD9 A;  5GIN C;  5HP8 A;  4EB6 B;  1QVF F;  4O4H B;  1Q86 H;  3FD6 A;  2QTP A;  1W5E A;  4YJ3 A;  3VOB A;  3LWV C;  3LDT A;  5ITZ A; 
#chains in the Genus database with same CATH homology
 1Q8R A;  2H8C A;  2H8E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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