2HBAA

Crystal structure of n-terminal domain of ribosomal protein l9 (ntl9) k12m
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
52
structure length
52
Chain Sequence
MKVIFLKDVKGMGKKGEIKNVADGYANNFLFKQGLAIEATPANLKALEAQKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Energetically significant networks of coupled interactions within an unfolded protein.
pubmed doi rcsb
molecule tags Rna binding protein
source organism Geobacillus stearothermophilus
molecule keywords 50S ribosomal protein L9
total genus 14
structure length 52
sequence length 52
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-06-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01281 Ribosomal_L9_N Ribosomal protein L9, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.5.10 Alpha Beta 3-Layer(aba) Sandwich Ribosomal Protein L9; domain 1 Ribosomal protein L9, N-terminal domain 2hbaA00
2HVFA 2HBAA 4UY8H 2HBBA 1CQUA 1DIVA 3J7ZH
chains in the Genus database with same CATH superfamily
2LSMA 5GHRB 4OO7A 2X4AA 4RSRA 5GHSC 2HVFA 3TBNA 4F1EA 3REEA 3FNDA 3FNVA 3CO4A 4FR0A 2QH7A 4FS8A 4EZFA 3EW0A 2Q9QB 1DIVA 2OUTA 4F2CA 4KW7A 2E9XD 4FSDA 2X49A 3LPQA 2E9XB 3TBOA 2HBBA 4F28A 4UY8H 3J7ZH 2EHOC 2QD0A 2HBAA 2R13A 3ANWA 2Q9QA 4OOAA 3S2RA 5EG5A 2HJQA 3S2QA 1CQUA
chains in the Genus database with same CATH topology
2HVFA 2HBAA 4UY8H 2HBBA 1CQUA 1DIVA 3J7ZH
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HVF A;  2HBA A;  4UY8 H;  2HBB A;  1CQU A;  1DIV A;  3J7Z H; 
#chains in the Genus database with same CATH topology
 2LSM A;  5GHR B;  4OO7 A;  2X4A A;  4RSR A;  5GHS C;  2HVF A;  3TBN A;  4F1E A;  3REE A;  3FND A;  3FNV A;  3CO4 A;  4FR0 A;  2QH7 A;  4FS8 A;  4EZF A;  3EW0 A;  2Q9Q B;  1DIV A;  2OUT A;  4F2C A;  4KW7 A;  2E9X D;  4FSD A;  2X49 A;  3LPQ A;  2E9X B;  3TBO A;  2HBB A;  4F28 A;  4UY8 H;  3J7Z H;  2EHO C;  2QD0 A;  2HBA A;  2R13 A;  3ANW A;  2Q9Q A;  4OOA A;  3S2R A;  5EG5 A;  2HJQ A;  3S2Q A;  1CQU A; 
#chains in the Genus database with same CATH homology
 2HVF A;  2HBA A;  4UY8 H;  2HBB A;  1CQU A;  1DIV A;  3J7Z H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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