2HBAA

Crystal structure of n-terminal domain of ribosomal protein l9 (ntl9) k12m
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
52
structure length
52
Chain Sequence
MKVIFLKDVKGMGKKGEIKNVADGYANNFLFKQGLAIEATPANLKALEAQKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein
molecule keywords 50S ribosomal protein L9
publication title Energetically significant networks of coupled interactions within an unfolded protein.
pubmed doi rcsb
source organism Geobacillus stearothermophilus
total genus 14
structure length 52
sequence length 52
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-06-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01281 Ribosomal_L9_N Ribosomal protein L9, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.5.10 Alpha Beta 3-Layer(aba) Sandwich Ribosomal Protein L9; domain 1 Ribosomal protein L9, N-terminal domain 2hbaA00
2HBAA 2HBBA 2HVFA 4UY8H 1DIVA 3J7ZH 1CQUA
chains in the Genus database with same CATH superfamily
4FS8A 2E9XD 2E9XB 2HBBA 4UY8H 3EW0A 2X4AA 3LPQA 1DIVA 4KW7A 3ANWA 4F2CA 2EHOC 1CQUA 2R13A 2Q9QB 4FR0A 4RSRA 3TBNA 3CO4A 3FNDA 4FSDA 3J7ZH 2LSMA 2X49A 2HBAA 3TBOA 3REEA 5GHSC 4F1EA 5GHRB 4OO7A 2OUTA 5EG5A 3S2QA 4F28A 2QH7A 2HVFA 2HJQA 2QD0A 4OOAA 3S2RA 3FNVA 2Q9QA 4EZFA
chains in the Genus database with same CATH topology
2HBAA 2HBBA 2HVFA 4UY8H 1DIVA 3J7ZH 1CQUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HBA A;  2HBB A;  2HVF A;  4UY8 H;  1DIV A;  3J7Z H;  1CQU A; 
#chains in the Genus database with same CATH topology
 4FS8 A;  2E9X D;  2E9X B;  2HBB A;  4UY8 H;  3EW0 A;  2X4A A;  3LPQ A;  1DIV A;  4KW7 A;  3ANW A;  4F2C A;  2EHO C;  1CQU A;  2R13 A;  2Q9Q B;  4FR0 A;  4RSR A;  3TBN A;  3CO4 A;  3FND A;  4FSD A;  3J7Z H;  2LSM A;  2X49 A;  2HBA A;  3TBO A;  3REE A;  5GHS C;  4F1E A;  5GHR B;  4OO7 A;  2OUT A;  5EG5 A;  3S2Q A;  4F28 A;  2QH7 A;  2HVF A;  2HJQ A;  2QD0 A;  4OOA A;  3S2R A;  3FNV A;  2Q9Q A;  4EZF A; 
#chains in the Genus database with same CATH homology
 2HBA A;  2HBB A;  2HVF A;  4UY8 H;  1DIV A;  3J7Z H;  1CQU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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