2HGKA

Solution nmr structure of protein yqcc from e. coli: northeast structural genomics consortium target er225
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
117
structure length
117
Chain Sequence
MTTHDRVRLQLQALEALLREHQHWRNDEPQPHQFNSTQPFFMDTMEPLEWLQWVLIPRMHDLLDNKQPLPGAFAVAPYYEMALATDHPQRALILAELEKLDALFADDASLEHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Hypothetical protein yqcC
publication title NMR structure of protein YqcC from E.coli
rcsb
source organism Escherichia coli
total genus 31
structure length 117
sequence length 117
ec nomenclature
pdb deposition date 2006-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04287 DUF446 tRNA pseudouridine synthase C
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1440.40 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) YqcC-like 2hgkA01
2HGKA
chains in the Genus database with same CATH superfamily
1YO7A 2RIOA 4GXTA 3VA9A 3KP9A 2IP6A 4NV2A 4U6RA 2ZRRA 4OAVB 3LJ0A 2A2CA 3JSBA 3DO9A 2V1CC 2F66B 2XMXA 2GSCA 2P22B 4PL4A 3DA4A 4Q9VA 5LNK1 1W3SA 2YFAA 4O1PA 2V6EA 2CAZB 3Q8DA 3LJ1A 4YZDA 4AS2A 3FNBA 4YZ9A 2FU2A 2QSBA 3B55A 4JCVE 2XTQA 2MJFB 2ZW3A 4Z7GA 4OAUC 3FVVA 3AJFA 4DWLA 2JB3A 2L1LB 3SDJA 1TDPA 2JBWA 2JB2A 4G76A 5HGIA 4HEA1 4G75A 4O1OA 2QZGA 4PL3A 2RADA 2XTRA 3DA3A 3LJ2A 3UITA 2QGMA 2HGKA 3L0IA 4I1TA 1JQOA 2E8GA 3FBVA 3I9V1 3IAS1 2A2DA 4NV5A 2FEFA 2KKMA 2RLDA 4HFVA 2BL8A 2F6MB 3F4MA 2K19A 1SJ8A 4AS3A 1U5KA 2YFBA 2ETDA 2JAEA 2FUG1 3P23A 4YZCA 3IAM1 2BL7A 2JB1A 4PL5A 4Z7HA
chains in the Genus database with same CATH topology
2HGKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HGK A; 
#chains in the Genus database with same CATH topology
 1YO7 A;  2RIO A;  4GXT A;  3VA9 A;  3KP9 A;  2IP6 A;  4NV2 A;  4U6R A;  2ZRR A;  4OAV B;  3LJ0 A;  2A2C A;  3JSB A;  3DO9 A;  2V1C C;  2F66 B;  2XMX A;  2GSC A;  2P22 B;  4PL4 A;  3DA4 A;  4Q9V A;  5LNK 1;  1W3S A;  2YFA A;  4O1P A;  2V6E A;  2CAZ B;  3Q8D A;  3LJ1 A;  4YZD A;  4AS2 A;  3FNB A;  4YZ9 A;  2FU2 A;  2QSB A;  3B55 A;  4JCV E;  2XTQ A;  2MJF B;  2ZW3 A;  4Z7G A;  4OAU C;  3FVV A;  3AJF A;  4DWL A;  2JB3 A;  2L1L B;  3SDJ A;  1TDP A;  2JBW A;  2JB2 A;  4G76 A;  5HGI A;  4HEA 1;  4G75 A;  4O1O A;  2QZG A;  4PL3 A;  2RAD A;  2XTR A;  3DA3 A;  3LJ2 A;  3UIT A;  2QGM A;  2HGK A;  3L0I A;  4I1T A;  1JQO A;  2E8G A;  3FBV A;  3I9V 1;  3IAS 1;  2A2D A;  4NV5 A;  2FEF A;  2KKM A;  2RLD A;  4HFV A;  2BL8 A;  2F6M B;  3F4M A;  2K19 A;  1SJ8 A;  4AS3 A;  1U5K A;  2YFB A;  2ETD A;  2JAE A;  2FUG 1;  3P23 A;  4YZC A;  3IAM 1;  2BL7 A;  2JB1 A;  4PL5 A;  4Z7H A; 
#chains in the Genus database with same CATH homology
 2HGK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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