2HI1A

The structure of a putative 4-hydroxythreonine-4-phosphate dehydrogenase from salmonella typhimurium.
Total Genus 90
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
326
structure length
325
Chain Sequence
ETKTVAITMGDPAGIGPEIIVKALSEDGLNGAPLVVIGCLATLKRLQAKGITPNVELRAIERVAEARFAPGIIHVIDEPLAQPEALEAGKVQAQAGDLAYRCVKRATELALRGDVQAIATAPLNKEALHLAGHNYPGHTELLATLTHSRDYAMVLYTDKLKVIHVSTHIALRKFLDTLSTARVETVIGIADTFLKRVGYVKPRIAVAGVNPHAGENGLFGDEETRILTPAITDARAKGMDVYGPCPPDTVFLQAYEGQYDMVVAMYHDQGHIPLKLLGYDGVNITAGLPFIRTSADHGTAFDIAWTGKAKSESMAVSIKLAMQLA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords 4-hydroxythreonine-4-phosphate dehydrogenase 2
publication title The structure of a putative 4-hydroxythreonine-4-phosphate dehydrogenase from Salmonella typhimurium.
rcsb
source organism Salmonella typhimurium
total genus 90
structure length 325
sequence length 326
chains with identical sequence B
ec nomenclature ec 1.1.1.408: 4-phospho-D-threonate 3-dehydrogenase.
pdb deposition date 2006-06-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04166 PdxA Pyridoxal phosphate biosynthetic protein PdxA
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate Dehydrogenase 2hi1A00
2Y41A 4XXVA 1W0DA 1DR8A 1GRPA 1BL5A 9ICDA 3R8WA 4BNPA 4L04A 4AJRA 1XACA 3LCBC 5J32A 1GC8A 4HCXA 1AI3A 5GRFB 1SJSA 3VL6A 5K10A 1CNZA 3INMA 3VMJA 3TY4A 5I95A 3BLVA 5DE1A 5HN6A 2ZTWA 3VL3A 1IKAA 4AJ3A 1PB1A 1VI1A 4L03A 3WZVA 4AJCA 1PB3A 3VL4A 4AJAA 1DPZA 3VKZA 4I3LA 5HN5A 5LGEA 3U1HA 1V5BA 2HI1A 4KZOA 3US8A 2Y3ZA 1PS6A 2D4VA 3BLXA 1IDDA 3WZXA 1IDFA 3WZWA 1YCOA 5J34A 1X0LA 1V53A 1CW7A 5GRLA 1T09A 5GRIB 2QFWA 1U7NA 3VL7A 6ICDA 3LXYA 2UXQA 1CW4A 1CW1A 4JQPA 5L57A 2E5MA 1HJ6A 1LWDA 2G4OA 1GC9A 3ASJA 1WALA 4L06A 2E0CA 1XADA 3FLKA 1IDMA 5GREA 1GROA 1OSIA 8ICDA 1XGVA 2Y42A 4AJSA 3BLVB 3MASA 2QFXA 4ICDA 1XAAA 1PS7A 1IPDA 1CM7A 5GRHA 2QFYA 3U9EA 2QFVA 2D1CA 1P8FA 4WUOA 4Y1PA 5I96A 3UDUA 3TY3A 4AOYA 3TSNA 5HN4A 4XS3A 2UXRA 3MAPA 5ICDA 3VMKA 5GRFA 1AI2A 1G2UA 5GRLB 1TYOA 3MARA 5K11A 1IDCA 4AOVA 4XRXA 4P69C 1HQSA 4I3KA 4UMXA 2Y40A 1V94A 1XABA 3FMXX 3WZYA 5HN3A 3VMLA 1OSJA 1HEXA 4ATYA 5J33A 1ZORA 3AH3A 1IDEA 3UDOA 3VL2A 4AJBA 2AYQA 5GREB 4UMYA 1R8KA 7ICDA 2IV0A 4JA8A 4IWHA 1XKDA 2DHTA 1YXOA 1A05A 3BLXB 3ICDA 3MASB 1ISOA 1DR0A 1VLCA 1PTMA 4F7IA 3DMSA 4YB4A 5GRHB 3UF6A 4AOUA 5GRIA 3TNGA 1T0LA 5L58A 1WPWA
chains in the Genus database with same CATH superfamily
2Y41A 4XXVA 1W0DA 1DR8A 1GRPA 1BL5A 9ICDA 3R8WA 4BNPA 4L04A 4AJRA 1XACA 3LCBC 5J32A 1GC8A 4HCXA 1AI3A 5GRFB 1SJSA 3VL6A 5K10A 1CNZA 3INMA 3VMJA 3TY4A 5I95A 3BLVA 5DE1A 5HN6A 2ZTWA 3VL3A 1IKAA 4AJ3A 1PB1A 1VI1A 4L03A 3WZVA 4AJCA 1PB3A 3VL4A 4AJAA 1DPZA 3VKZA 4I3LA 5HN5A 5LGEA 3U1HA 1V5BA 2HI1A 4KZOA 3US8A 2Y3ZA 1PS6A 2D4VA 3BLXA 1IDDA 3WZXA 1IDFA 3WZWA 1YCOA 5J34A 1X0LA 1V53A 1CW7A 5GRLA 1T09A 5GRIB 2QFWA 1U7NA 3VL7A 6ICDA 3LXYA 2UXQA 1CW4A 1CW1A 4JQPA 5L57A 2E5MA 1HJ6A 1LWDA 2G4OA 1GC9A 3ASJA 1WALA 4L06A 2E0CA 1XADA 3FLKA 1IDMA 5GREA 1GROA 1OSIA 8ICDA 1XGVA 2Y42A 4AJSA 3BLVB 3MASA 2QFXA 4ICDA 1XAAA 1PS7A 1IPDA 1CM7A 5GRHA 2QFYA 3U9EA 2QFVA 2D1CA 1P8FA 4WUOA 4Y1PA 5I96A 3UDUA 3TY3A 4AOYA 3TSNA 5HN4A 4XS3A 2UXRA 3MAPA 5ICDA 3VMKA 5GRFA 1AI2A 1G2UA 5GRLB 1TYOA 3MARA 5K11A 1IDCA 4AOVA 4XRXA 4P69C 1HQSA 4I3KA 4UMXA 2Y40A 1V94A 1XABA 3FMXX 3WZYA 5HN3A 3VMLA 1OSJA 1HEXA 4ATYA 5J33A 1ZORA 3AH3A 1IDEA 3UDOA 3VL2A 4AJBA 2AYQA 5GREB 4UMYA 1R8KA 7ICDA 2IV0A 4JA8A 4IWHA 1XKDA 2DHTA 1YXOA 1A05A 3BLXB 3ICDA 3MASB 1ISOA 1DR0A 1VLCA 1PTMA 4F7IA 3DMSA 4YB4A 5GRHB 3UF6A 4AOUA 5GRIA 3TNGA 1T0LA 5L58A 1WPWA
chains in the Genus database with same CATH topology
2Y41A 4XXVA 1W0DA 1DR8A 1GRPA 1BL5A 9ICDA 3R8WA 4BNPA 4L04A 4AJRA 1XACA 3LCBC 5J32A 1GC8A 4HCXA 1AI3A 5GRFB 1SJSA 3VL6A 5K10A 1CNZA 3INMA 3VMJA 3TY4A 5I95A 3BLVA 5DE1A 5HN6A 2ZTWA 3VL3A 1IKAA 4AJ3A 1PB1A 1VI1A 4L03A 3WZVA 4AJCA 1PB3A 3VL4A 4AJAA 1DPZA 3VKZA 4I3LA 5HN5A 5LGEA 3U1HA 1V5BA 2HI1A 4KZOA 3US8A 2Y3ZA 1PS6A 2D4VA 3BLXA 1IDDA 3WZXA 1IDFA 3WZWA 1YCOA 5J34A 1X0LA 1V53A 1CW7A 5GRLA 1T09A 5GRIB 2QFWA 1U7NA 3VL7A 6ICDA 3LXYA 2UXQA 1CW4A 1CW1A 4JQPA 5L57A 2E5MA 1HJ6A 1LWDA 2G4OA 1GC9A 3ASJA 1WALA 4L06A 2E0CA 1XADA 3FLKA 1IDMA 5GREA 1GROA 1OSIA 8ICDA 1XGVA 2Y42A 4AJSA 3BLVB 3MASA 2QFXA 4ICDA 1XAAA 1PS7A 1IPDA 1CM7A 5GRHA 2QFYA 3U9EA 2QFVA 2D1CA 1P8FA 4WUOA 4Y1PA 5I96A 3UDUA 3TY3A 4AOYA 3TSNA 5HN4A 4XS3A 2UXRA 3MAPA 5ICDA 3VMKA 5GRFA 1AI2A 1G2UA 5GRLB 1TYOA 3MARA 5K11A 1IDCA 4AOVA 4XRXA 4P69C 1HQSA 4I3KA 4UMXA 2Y40A 1V94A 1XABA 3FMXX 3WZYA 5HN3A 3VMLA 1OSJA 1HEXA 4ATYA 5J33A 1ZORA 3AH3A 1IDEA 3UDOA 3VL2A 4AJBA 2AYQA 5GREB 4UMYA 1R8KA 7ICDA 2IV0A 4JA8A 4IWHA 1XKDA 2DHTA 1YXOA 1A05A 3BLXB 3ICDA 3MASB 1ISOA 1DR0A 1VLCA 1PTMA 4F7IA 3DMSA 4YB4A 5GRHB 3UF6A 4AOUA 5GRIA 3TNGA 1T0LA 5L58A 1WPWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Y41 A;  4XXV A;  1W0D A;  1DR8 A;  1GRP A;  1BL5 A;  9ICD A;  3R8W A;  4BNP A;  4L04 A;  4AJR A;  1XAC A;  3LCB C;  5J32 A;  1GC8 A;  4HCX A;  1AI3 A;  5GRF B;  1SJS A;  3VL6 A;  5K10 A;  1CNZ A;  3INM A;  3VMJ A;  3TY4 A;  5I95 A;  3BLV A;  5DE1 A;  5HN6 A;  2ZTW A;  3VL3 A;  1IKA A;  4AJ3 A;  1PB1 A;  1VI1 A;  4L03 A;  3WZV A;  4AJC A;  1PB3 A;  3VL4 A;  4AJA A;  1DPZ A;  3VKZ A;  4I3L A;  5HN5 A;  5LGE A;  3U1H A;  1V5B A;  2HI1 A;  4KZO A;  3US8 A;  2Y3Z A;  1PS6 A;  2D4V A;  3BLX A;  1IDD A;  3WZX A;  1IDF A;  3WZW A;  1YCO A;  5J34 A;  1X0L A;  1V53 A;  1CW7 A;  5GRL A;  1T09 A;  5GRI B;  2QFW A;  1U7N A;  3VL7 A;  6ICD A;  3LXY A;  2UXQ A;  1CW4 A;  1CW1 A;  4JQP A;  5L57 A;  2E5M A;  1HJ6 A;  1LWD A;  2G4O A;  1GC9 A;  3ASJ A;  1WAL A;  4L06 A;  2E0C A;  1XAD A;  3FLK A;  1IDM A;  5GRE A;  1GRO A;  1OSI A;  8ICD A;  1XGV A;  2Y42 A;  4AJS A;  3BLV B;  3MAS A;  2QFX A;  4ICD A;  1XAA A;  1PS7 A;  1IPD A;  1CM7 A;  5GRH A;  2QFY A;  3U9E A;  2QFV A;  2D1C A;  1P8F A;  4WUO A;  4Y1P A;  5I96 A;  3UDU A;  3TY3 A;  4AOY A;  3TSN A;  5HN4 A;  4XS3 A;  2UXR A;  3MAP A;  5ICD A;  3VMK A;  5GRF A;  1AI2 A;  1G2U A;  5GRL B;  1TYO A;  3MAR A;  5K11 A;  1IDC A;  4AOV A;  4XRX A;  4P69 C;  1HQS A;  4I3K A;  4UMX A;  2Y40 A;  1V94 A;  1XAB A;  3FMX X;  3WZY A;  5HN3 A;  3VML A;  1OSJ A;  1HEX A;  4ATY A;  5J33 A;  1ZOR A;  3AH3 A;  1IDE A;  3UDO A;  3VL2 A;  4AJB A;  2AYQ A;  5GRE B;  4UMY A;  1R8K A;  7ICD A;  2IV0 A;  4JA8 A;  4IWH A;  1XKD A;  2DHT A;  1YXO A;  1A05 A;  3BLX B;  3ICD A;  3MAS B;  1ISO A;  1DR0 A;  1VLC A;  1PTM A;  4F7I A;  3DMS A;  4YB4 A;  5GRH B;  3UF6 A;  4AOU A;  5GRI A;  3TNG A;  1T0L A;  5L58 A;  1WPW A; 
#chains in the Genus database with same CATH topology
 2Y41 A;  4XXV A;  1W0D A;  1DR8 A;  1GRP A;  1BL5 A;  9ICD A;  3R8W A;  4BNP A;  4L04 A;  4AJR A;  1XAC A;  3LCB C;  5J32 A;  1GC8 A;  4HCX A;  1AI3 A;  5GRF B;  1SJS A;  3VL6 A;  5K10 A;  1CNZ A;  3INM A;  3VMJ A;  3TY4 A;  5I95 A;  3BLV A;  5DE1 A;  5HN6 A;  2ZTW A;  3VL3 A;  1IKA A;  4AJ3 A;  1PB1 A;  1VI1 A;  4L03 A;  3WZV A;  4AJC A;  1PB3 A;  3VL4 A;  4AJA A;  1DPZ A;  3VKZ A;  4I3L A;  5HN5 A;  5LGE A;  3U1H A;  1V5B A;  2HI1 A;  4KZO A;  3US8 A;  2Y3Z A;  1PS6 A;  2D4V A;  3BLX A;  1IDD A;  3WZX A;  1IDF A;  3WZW A;  1YCO A;  5J34 A;  1X0L A;  1V53 A;  1CW7 A;  5GRL A;  1T09 A;  5GRI B;  2QFW A;  1U7N A;  3VL7 A;  6ICD A;  3LXY A;  2UXQ A;  1CW4 A;  1CW1 A;  4JQP A;  5L57 A;  2E5M A;  1HJ6 A;  1LWD A;  2G4O A;  1GC9 A;  3ASJ A;  1WAL A;  4L06 A;  2E0C A;  1XAD A;  3FLK A;  1IDM A;  5GRE A;  1GRO A;  1OSI A;  8ICD A;  1XGV A;  2Y42 A;  4AJS A;  3BLV B;  3MAS A;  2QFX A;  4ICD A;  1XAA A;  1PS7 A;  1IPD A;  1CM7 A;  5GRH A;  2QFY A;  3U9E A;  2QFV A;  2D1C A;  1P8F A;  4WUO A;  4Y1P A;  5I96 A;  3UDU A;  3TY3 A;  4AOY A;  3TSN A;  5HN4 A;  4XS3 A;  2UXR A;  3MAP A;  5ICD A;  3VMK A;  5GRF A;  1AI2 A;  1G2U A;  5GRL B;  1TYO A;  3MAR A;  5K11 A;  1IDC A;  4AOV A;  4XRX A;  4P69 C;  1HQS A;  4I3K A;  4UMX A;  2Y40 A;  1V94 A;  1XAB A;  3FMX X;  3WZY A;  5HN3 A;  3VML A;  1OSJ A;  1HEX A;  4ATY A;  5J33 A;  1ZOR A;  3AH3 A;  1IDE A;  3UDO A;  3VL2 A;  4AJB A;  2AYQ A;  5GRE B;  4UMY A;  1R8K A;  7ICD A;  2IV0 A;  4JA8 A;  4IWH A;  1XKD A;  2DHT A;  1YXO A;  1A05 A;  3BLX B;  3ICD A;  3MAS B;  1ISO A;  1DR0 A;  1VLC A;  1PTM A;  4F7I A;  3DMS A;  4YB4 A;  5GRH B;  3UF6 A;  4AOU A;  5GRI A;  3TNG A;  1T0L A;  5L58 A;  1WPW A; 
#chains in the Genus database with same CATH homology
 2Y41 A;  4XXV A;  1W0D A;  1DR8 A;  1GRP A;  1BL5 A;  9ICD A;  3R8W A;  4BNP A;  4L04 A;  4AJR A;  1XAC A;  3LCB C;  5J32 A;  1GC8 A;  4HCX A;  1AI3 A;  5GRF B;  1SJS A;  3VL6 A;  5K10 A;  1CNZ A;  3INM A;  3VMJ A;  3TY4 A;  5I95 A;  3BLV A;  5DE1 A;  5HN6 A;  2ZTW A;  3VL3 A;  1IKA A;  4AJ3 A;  1PB1 A;  1VI1 A;  4L03 A;  3WZV A;  4AJC A;  1PB3 A;  3VL4 A;  4AJA A;  1DPZ A;  3VKZ A;  4I3L A;  5HN5 A;  5LGE A;  3U1H A;  1V5B A;  2HI1 A;  4KZO A;  3US8 A;  2Y3Z A;  1PS6 A;  2D4V A;  3BLX A;  1IDD A;  3WZX A;  1IDF A;  3WZW A;  1YCO A;  5J34 A;  1X0L A;  1V53 A;  1CW7 A;  5GRL A;  1T09 A;  5GRI B;  2QFW A;  1U7N A;  3VL7 A;  6ICD A;  3LXY A;  2UXQ A;  1CW4 A;  1CW1 A;  4JQP A;  5L57 A;  2E5M A;  1HJ6 A;  1LWD A;  2G4O A;  1GC9 A;  3ASJ A;  1WAL A;  4L06 A;  2E0C A;  1XAD A;  3FLK A;  1IDM A;  5GRE A;  1GRO A;  1OSI A;  8ICD A;  1XGV A;  2Y42 A;  4AJS A;  3BLV B;  3MAS A;  2QFX A;  4ICD A;  1XAA A;  1PS7 A;  1IPD A;  1CM7 A;  5GRH A;  2QFY A;  3U9E A;  2QFV A;  2D1C A;  1P8F A;  4WUO A;  4Y1P A;  5I96 A;  3UDU A;  3TY3 A;  4AOY A;  3TSN A;  5HN4 A;  4XS3 A;  2UXR A;  3MAP A;  5ICD A;  3VMK A;  5GRF A;  1AI2 A;  1G2U A;  5GRL B;  1TYO A;  3MAR A;  5K11 A;  1IDC A;  4AOV A;  4XRX A;  4P69 C;  1HQS A;  4I3K A;  4UMX A;  2Y40 A;  1V94 A;  1XAB A;  3FMX X;  3WZY A;  5HN3 A;  3VML A;  1OSJ A;  1HEX A;  4ATY A;  5J33 A;  1ZOR A;  3AH3 A;  1IDE A;  3UDO A;  3VL2 A;  4AJB A;  2AYQ A;  5GRE B;  4UMY A;  1R8K A;  7ICD A;  2IV0 A;  4JA8 A;  4IWH A;  1XKD A;  2DHT A;  1YXO A;  1A05 A;  3BLX B;  3ICD A;  3MAS B;  1ISO A;  1DR0 A;  1VLC A;  1PTM A;  4F7I A;  3DMS A;  4YB4 A;  5GRH B;  3UF6 A;  4AOU A;  5GRI A;  3TNG A;  1T0L A;  5L58 A;  1WPW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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