2HIIA

Heterotrimeric pcna sliding clamp
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
249
structure length
249
Chain Sequence
MFKIVYPNAKDFFSFINSITNVTDSIILNFTEDGIFSRHLTEDKVLMAIMRIPKDVLSEYSIDSPTSVKLDVSSVKKILSKASSKKATIELTETDSGLKIIIRDEKSGAKSTIYIKAEKGQVEQLTEPKVNLAVNFTTDESVLNVIAADVTLVGEEMRISTEEDKIKIEAGEEGKRYVAFLMKDKPLKELSIDTSASSSYSAEMFKDAVKGLRGFSAPTMVSFGENLPMKIDVEAVSGGHMIFWIAPRL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A Flexible Interface between DNA Ligase and PCNA Supports Conformational Switching and Efficient Ligation of DNA.
pubmed doi rcsb
molecule keywords PCNA1 (SSO0397)
molecule tags Replication
source organism Sulfolobus solfataricus
total genus 57
structure length 249
sequence length 249
chains with identical sequence X
ec nomenclature
pdb deposition date 2006-06-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 2hiiA01
5AUJA 3GGRC 1SXJF 1UD9A 1GE8A 3HSLX 3GGRB 3FDSC 3GGRA 4TR6A 1W60A 1U7BA 1PLRA 5B7OA 2AVTA 3P91A 1IZ5A 3V61B 3A2FB 3HI8A 1T6LA 4ZTDA 1DMLA 2NTIC 2ZVMA 5H0TA 5CFKA 2ZVKA 5E0VA 1CZDA 2IX2B 4L60A 3TBLA 1RXMA 2ZVLA 2IX2A 3U61F 2IZOC 3AIXB 3LX1A 4YHRA 3AIXA 2AWAA 5E0UA 2Z0LA 3VKXA 3GPNA 3U5ZF 3AIZC 1RXZA 3GPMA 3K4XA 3V62B 1U76A 2OD8A 1UL1A 3WGWA 3A1JC 1ISQA 3G65C 3IFVA 2HIKC 3FDSD 2NTIB 3G65B 2NTIA 1IZ4A 1RWZA 3G65A 2ZVWA 4HK1A 2IZOB 4L6PA 5HACA 3U60F 2HIIC 5JNED 1B77A 1VYMA 4D2GA 2IJXA 2IO4B 3LX2A 2HIIB 5IXAA 5A6DA 5DA7A 2IO4A 2HIIA 3V60B 1B8HA 3AIZA 3P87A 5E0TA 1YYPA 4CS5A 1PLQA 5IY4A 3A1JB 1AXCA 3I2MX 3P83A 5DAIA 2HIKB 1VYJA 3A1JA 3F1WA 2HIKA 4RJFA 2ZVVA 2IX2C 5IWDA
chains in the Genus database with same CATH superfamily
5AUJA 3GGRC 1SXJF 1UD9A 1GE8A 3HSLX 3GGRB 3FDSC 3GGRA 4TR6A 1W60A 1U7BA 1PLRA 5B7OA 2AVTA 3P91A 1IZ5A 3V61B 3A2FB 3HI8A 1T6LA 4ZTDA 1DMLA 2NTIC 2ZVMA 5H0TA 5CFKA 2ZVKA 5E0VA 1CZDA 2IX2B 4L60A 3TBLA 1RXMA 2ZVLA 2IX2A 3U61F 2IZOC 3AIXB 3LX1A 4YHRA 3AIXA 2AWAA 5E0UA 2Z0LA 3VKXA 3GPNA 3U5ZF 3AIZC 1RXZA 3GPMA 3K4XA 3V62B 1U76A 2OD8A 1UL1A 3WGWA 3A1JC 1ISQA 3G65C 3IFVA 2HIKC 3FDSD 2NTIB 3G65B 2NTIA 1IZ4A 1RWZA 3G65A 2ZVWA 4HK1A 2IZOB 4L6PA 5HACA 3U60F 2HIIC 5JNED 1B77A 1VYMA 4D2GA 2IJXA 2IO4B 3LX2A 2HIIB 5IXAA 5A6DA 5DA7A 2IO4A 2HIIA 3V60B 1B8HA 3AIZA 3P87A 5E0TA 1YYPA 4CS5A 1PLQA 5IY4A 3A1JB 1AXCA 3I2MX 3P83A 5DAIA 2HIKB 1VYJA 3A1JA 3F1WA 2HIKA 4RJFA 2ZVVA 2IX2C 5IWDA
chains in the Genus database with same CATH topology
5AUJA 3GGRC 1SXJF 1UD9A 1GE8A 3HSLX 3GGRB 3FDSC 3GGRA 4TR6A 1W60A 1U7BA 1PLRA 5B7OA 2AVTA 3P91A 1IZ5A 3V61B 3A2FB 3HI8A 1T6LA 4ZTDA 1DMLA 2NTIC 2ZVMA 5H0TA 5CFKA 2ZVKA 5E0VA 1CZDA 2IX2B 4L60A 3TBLA 1RXMA 2ZVLA 2IX2A 3U61F 2IZOC 3AIXB 3LX1A 4YHRA 3AIXA 2AWAA 5E0UA 2Z0LA 3VKXA 3GPNA 3U5ZF 3AIZC 1RXZA 3GPMA 3K4XA 3V62B 1U76A 2OD8A 1UL1A 3WGWA 3A1JC 1ISQA 3G65C 3IFVA 2HIKC 3FDSD 2NTIB 3G65B 2NTIA 1IZ4A 1RWZA 3G65A 2ZVWA 4HK1A 2IZOB 4L6PA 5HACA 3U60F 2HIIC 5JNED 1B77A 1VYMA 4D2GA 2IJXA 2IO4B 3LX2A 2HIIB 5IXAA 5A6DA 5DA7A 2IO4A 2HIIA 3V60B 1B8HA 3AIZA 3P87A 5E0TA 1YYPA 4CS5A 1PLQA 5IY4A 3A1JB 1AXCA 3I2MX 3P83A 5DAIA 2HIKB 1VYJA 3A1JA 3F1WA 2HIKA 4RJFA 2ZVVA 2IX2C 5IWDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AUJ A;  3GGR C;  1SXJ F;  1UD9 A;  1GE8 A;  3HSL X;  3GGR B;  3FDS C;  3GGR A;  4TR6 A;  1W60 A;  1U7B A;  1PLR A;  5B7O A;  2AVT A;  3P91 A;  1IZ5 A;  3V61 B;  3A2F B;  3HI8 A;  1T6L A;  4ZTD A;  1DML A;  2NTI C;  2ZVM A;  5H0T A;  5CFK A;  2ZVK A;  5E0V A;  1CZD A;  2IX2 B;  4L60 A;  3TBL A;  1RXM A;  2ZVL A;  2IX2 A;  3U61 F;  2IZO C;  3AIX B;  3LX1 A;  4YHR A;  3AIX A;  2AWA A;  5E0U A;  2Z0L A;  3VKX A;  3GPN A;  3U5Z F;  3AIZ C;  1RXZ A;  3GPM A;  3K4X A;  3V62 B;  1U76 A;  2OD8 A;  1UL1 A;  3WGW A;  3A1J C;  1ISQ A;  3G65 C;  3IFV A;  2HIK C;  3FDS D;  2NTI B;  3G65 B;  2NTI A;  1IZ4 A;  1RWZ A;  3G65 A;  2ZVW A;  4HK1 A;  2IZO B;  4L6P A;  5HAC A;  3U60 F;  2HII C;  5JNE D;  1B77 A;  1VYM A;  4D2G A;  2IJX A;  2IO4 B;  3LX2 A;  2HII B;  5IXA A;  5A6D A;  5DA7 A;  2IO4 A;  2HII A;  3V60 B;  1B8H A;  3AIZ A;  3P87 A;  5E0T A;  1YYP A;  4CS5 A;  1PLQ A;  5IY4 A;  3A1J B;  1AXC A;  3I2M X;  3P83 A;  5DAI A;  2HIK B;  1VYJ A;  3A1J A;  3F1W A;  2HIK A;  4RJF A;  2ZVV A;  2IX2 C;  5IWD A; 
#chains in the Genus database with same CATH topology
 5AUJ A;  3GGR C;  1SXJ F;  1UD9 A;  1GE8 A;  3HSL X;  3GGR B;  3FDS C;  3GGR A;  4TR6 A;  1W60 A;  1U7B A;  1PLR A;  5B7O A;  2AVT A;  3P91 A;  1IZ5 A;  3V61 B;  3A2F B;  3HI8 A;  1T6L A;  4ZTD A;  1DML A;  2NTI C;  2ZVM A;  5H0T A;  5CFK A;  2ZVK A;  5E0V A;  1CZD A;  2IX2 B;  4L60 A;  3TBL A;  1RXM A;  2ZVL A;  2IX2 A;  3U61 F;  2IZO C;  3AIX B;  3LX1 A;  4YHR A;  3AIX A;  2AWA A;  5E0U A;  2Z0L A;  3VKX A;  3GPN A;  3U5Z F;  3AIZ C;  1RXZ A;  3GPM A;  3K4X A;  3V62 B;  1U76 A;  2OD8 A;  1UL1 A;  3WGW A;  3A1J C;  1ISQ A;  3G65 C;  3IFV A;  2HIK C;  3FDS D;  2NTI B;  3G65 B;  2NTI A;  1IZ4 A;  1RWZ A;  3G65 A;  2ZVW A;  4HK1 A;  2IZO B;  4L6P A;  5HAC A;  3U60 F;  2HII C;  5JNE D;  1B77 A;  1VYM A;  4D2G A;  2IJX A;  2IO4 B;  3LX2 A;  2HII B;  5IXA A;  5A6D A;  5DA7 A;  2IO4 A;  2HII A;  3V60 B;  1B8H A;  3AIZ A;  3P87 A;  5E0T A;  1YYP A;  4CS5 A;  1PLQ A;  5IY4 A;  3A1J B;  1AXC A;  3I2M X;  3P83 A;  5DAI A;  2HIK B;  1VYJ A;  3A1J A;  3F1W A;  2HIK A;  4RJF A;  2ZVV A;  2IX2 C;  5IWD A; 
#chains in the Genus database with same CATH homology
 5AUJ A;  3GGR C;  1SXJ F;  1UD9 A;  1GE8 A;  3HSL X;  3GGR B;  3FDS C;  3GGR A;  4TR6 A;  1W60 A;  1U7B A;  1PLR A;  5B7O A;  2AVT A;  3P91 A;  1IZ5 A;  3V61 B;  3A2F B;  3HI8 A;  1T6L A;  4ZTD A;  1DML A;  2NTI C;  2ZVM A;  5H0T A;  5CFK A;  2ZVK A;  5E0V A;  1CZD A;  2IX2 B;  4L60 A;  3TBL A;  1RXM A;  2ZVL A;  2IX2 A;  3U61 F;  2IZO C;  3AIX B;  3LX1 A;  4YHR A;  3AIX A;  2AWA A;  5E0U A;  2Z0L A;  3VKX A;  3GPN A;  3U5Z F;  3AIZ C;  1RXZ A;  3GPM A;  3K4X A;  3V62 B;  1U76 A;  2OD8 A;  1UL1 A;  3WGW A;  3A1J C;  1ISQ A;  3G65 C;  3IFV A;  2HIK C;  3FDS D;  2NTI B;  3G65 B;  2NTI A;  1IZ4 A;  1RWZ A;  3G65 A;  2ZVW A;  4HK1 A;  2IZO B;  4L6P A;  5HAC A;  3U60 F;  2HII C;  5JNE D;  1B77 A;  1VYM A;  4D2G A;  2IJX A;  2IO4 B;  3LX2 A;  2HII B;  5IXA A;  5A6D A;  5DA7 A;  2IO4 A;  2HII A;  3V60 B;  1B8H A;  3AIZ A;  3P87 A;  5E0T A;  1YYP A;  4CS5 A;  1PLQ A;  5IY4 A;  3A1J B;  1AXC A;  3I2M X;  3P83 A;  5DAI A;  2HIK B;  1VYJ A;  3A1J A;  3F1W A;  2HIK A;  4RJF A;  2ZVV A;  2IX2 C;  5IWD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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