2HJ0A

Crystal structure of the putative alfa subunit of citrate lyase in complex with citrate from streptococcus mutans, northeast structural genomics target smr12 .
Total Genus 156
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
sequence length
511
structure length
510
Chain Sequence
ENKLGRDIPRKYANQYGVFEELAHIKSYKESSRQVKPVKPSDDKLLSSIHEAIEKTRLKDGMTISFHHHFREGDYVMNMVLDEIAKMGIKDISIAPSSIANVHEPLIDHIKNGVVTNITSSGLRDKVGAAISEGIMENPVIIRSHGGRARAIATDDIHIDVAFLGAPSSDAYGNANGTRGKTTCGSLGYAMIDAKYADQVVIVTDTLVPYPNTPISIPQTDVDYIVVVDAIGDPEGIAKGATRYTKNPKELLIAEYAAKVITSSPYYKEGFSFQTGTGGASLAVTRFMREQMIKDDIKANFALGGITNAMVELLEEGLVDKILDVQDFDHPSAVSLDRNAEKHYEIDANMYASPLSKGSVINQLDICVLSALEVDTNFNVNVMTGSDGVIRGASGGHCDTAFAAKMSLVISPLVRGRIPTFVDKVNTVITPGTSVDVVVTEVGIAINPNRPDLIEYFKDLKVPQLTIEELKEKAYAIVGNPQPIQYGDKIVALIEYRDGSLIDVVRNVLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Putative citrate lyase, alfa subunit
publication title Crystal Structure of the Putative Alfa Subunit of Citrate Lyase in Complex with Citrate from Streptococcus mutans, Northeast Structural Genomics Target SmR12 (CASP Target).
rcsb
source organism Streptococcus mutans
molecule tags Lyase
total genus 156
structure length 510
sequence length 511
chains with identical sequence B
ec nomenclature ec 4.1.3.6: Citrate (pro-3S)-lyase.
pdb deposition date 2006-06-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04223 CitF Citrate lyase, alpha subunit (CitF)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 2hj0A01
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 2hj0A02
3RRLB 2NRBA 4KGBA 3D3UA 3RRLA 1M3EA 3DLXA 2AHVA 2OASA 3OXOA 2AHUA 3K6MA 1POIB 3EH7A 1POIA 2HJ0A 2AHWA 2NRCA 1OPEA 1K6DA 1O9LA 3CDKB 3CDKA 1XR4A 5DBNB 1OOYA 3QDQA 1OOZA 5DBNA 3GK7A
chains in the Genus database with same CATH superfamily
3RRLB 2NRBA 4KGBA 3D3UA 3RRLA 1M3EA 3DLXA 2AHVA 2OASA 3OXOA 2AHUA 3K6MA 1POIB 3EH7A 1POIA 2HJ0A 2AHWA 2NRCA 1OPEA 1K6DA 1O9LA 3CDKB 3CDKA 1XR4A 5DBNB 1OOYA 3QDQA 1OOZA 5DBNA 3GK7A
chains in the Genus database with same CATH topology
3RRLB 2NRBA 4KGBA 3D3UA 3RRLA 1M3EA 3DLXA 2AHVA 2OASA 3OXOA 2AHUA 3K6MA 1POIB 3EH7A 1POIA 2HJ0A 2AHWA 2NRCA 1OPEA 1K6DA 1O9LA 3CDKB 3CDKA 1XR4A 5DBNB 1OOYA 3QDQA 1OOZA 5DBNA 3GK7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RRL B;  2NRB A;  4KGB A;  3D3U A;  3RRL A;  1M3E A;  3DLX A;  2AHV A;  2OAS A;  3OXO A;  2AHU A;  3K6M A;  1POI B;  3EH7 A;  1POI A;  2HJ0 A;  2AHW A;  2NRC A;  1OPE A;  1K6D A;  1O9L A;  3CDK B;  3CDK A;  1XR4 A;  5DBN B;  1OOY A;  3QDQ A;  1OOZ A;  5DBN A;  3GK7 A; 
#chains in the Genus database with same CATH topology
 3RRL B;  2NRB A;  4KGB A;  3D3U A;  3RRL A;  1M3E A;  3DLX A;  2AHV A;  2OAS A;  3OXO A;  2AHU A;  3K6M A;  1POI B;  3EH7 A;  1POI A;  2HJ0 A;  2AHW A;  2NRC A;  1OPE A;  1K6D A;  1O9L A;  3CDK B;  3CDK A;  1XR4 A;  5DBN B;  1OOY A;  3QDQ A;  1OOZ A;  5DBN A;  3GK7 A; 
#chains in the Genus database with same CATH homology
 3RRL B;  2NRB A;  4KGB A;  3D3U A;  3RRL A;  1M3E A;  3DLX A;  2AHV A;  2OAS A;  3OXO A;  2AHU A;  3K6M A;  1POI B;  3EH7 A;  1POI A;  2HJ0 A;  2AHW A;  2NRC A;  1OPE A;  1K6D A;  1O9L A;  3CDK B;  3CDK A;  1XR4 A;  5DBN B;  1OOY A;  3QDQ A;  1OOZ A;  5DBN A;  3GK7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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